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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_593#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1047 fasta sequence
[CTGGGCGGGCCGAGCAGCACCGCCGGCTTCTCCACGACGCCGCTGCTGACGGCGTCGAACGACCCGACATACTACATCGTGATGCTCGCCGGCATCAGCGTCGGCGGGCAGCCGCTGAGCATCGACGCGTCCGTGTTCGCGTCGGGCGCGGTGGTCGACACGGGCACGGTGGTCACGCGGCTGCCGCCCACGGCGTACTCGGCGCTGCGGTCCGCGTTCCGCGCCGCCATGGCCCCCTACGGCTACCCGTCGGCGCCGGCGACGGGGATCCTGGACACCTGCTACGACTTCACCCGGTACGGCACCGTGACGCTGCCGACGATCTCGATCGCGTTCGGCGGCGGCGCGGCCATGGACCTCGGCACGTCGGGGATCCTCACCAGCGGGTGCCTGGCGTTCGCGCCCACCGGCGGCGACAGCCAGGCGTCCATCCTCGGGAACGTGCAGCAGCGCTCGTTCGAGGTGCGCTTCGACGGCAGCACCGTCGGCTTCATGCCCGCCTCCTGCTGATCGATCCATCCTAACAACTCACCCACGACAGTATTCTTCTTTAGTACGTACATGGCGTATAGGTGTATAGATATACGCGTACAATGTACGTACGTACACGAGGATGATAGGCGCATATACATAACATAACACTAGTAGTAGGAGAGTACATAGTACACAAATACACAAAGGTTGTAAGGCATAGTACTTTCGTTAGTGGATATACGATTTTTGAGAGTAATAATAATAAATTAGTTAAACGGGCTAACCATGTGCACGTGTTAGGCGCTTGACACGCTTGGTTTGATTTGGTGCGTCGTGGTCAGTGGCACGGTGCTCAACTGATGTGCTACGACTAAAAGTCTAAAACTAGTGGACAGTTAGGGGGACGTGTGGGACTGTGGGGCCACCTCGTTCTGTTGTGCATTGTGGCTGCTGTGGCCCAAGGCCCAGAGAGAAAACGTTATCTTTTTTTTTAATCTCGTAGATAATGCTGGATCTGTATTGTTGATGGTTGTTAGCCGAACATTCACCTGATATTTGTGTGAAAGTCAAGGG]
[+] EMBL AK108932 [CTGGGCGGGCCGAGCAGCACCGCCGGCTTCTCCACGACGCCGCTGCTGACGGCGTCGAACGACCCGACATACTACATCGTGATGCTCGCCGGCATCAGCGTCGGCGGGCAGCCGCTGAGCATCGACGCGTCCGTGTTCGCGTCGGGCGCGGTGGTCGACACGGGCACGGTGGTCACGCGGCTGCCGCCCACGGCGTACTCGGCGCTGCGGTCCGCGTTCCGCGCCGCCATGGCCCCCTACGGCTACCCGTCGGCGCCGGCGACGGGGATCCTGGACACCTGCTACGACTTCACCCGGTACGGCACCGTGACGCTGCCGACGATCTCGATCGCGTTCGGCGGCGGCGCGGCCATGGACCTCGGCACGTCGGGGATCCTCACCAGCGGGTGCCTGGCGTTCGCGCCCACCGGCGGCGACAGCCAGGCGTCCATCCTCGGGAACGTGCAGCAGCGCTCGTTCGAGGTGCGCTTCGACGGCAGCACCGTCGGCTTCATGCCCGCCTCCTGCTGATCGATCCATCCTAACAACTCACCCACGACAGTATTCTTCTTTAGTACGTACATGGCGTATAGGTGTATAGATATACGCGTACAATGTACGTACGTACACGAGGATGATAGGCGCATATACATAACATAACACTAGTAGTAGGAGAGTACATAGTACACAAATACACAAAGGTTGTAAGGCATAGTACTTTCGTTAGTGGATATACGATTTTTGAGAGTAATAATAATAAATTAGTTAAACGGGCTAACCATGTGCACGTGTTAGGCGCTTGACACGCTTGGTTTGATTTGGTGCGTCGTGGTCAGTGGCACGGTGCTCAACTGATGTGCTACGACTAAAAGTCTAAAACTAGTGGACAGTTAGGGGGACGTGTGGGACTGTGGGGCCACCTCGTTCTGTTGTGCATTGTGGCTGCTGTGGCCCAAGGCCCAGAGAGAAAACGTTATCTTTTTTTTTAATCTCGTAGATAATGCTGGATCTGTATTGTTGATGGTTGTTAGCCGAACATTCACCTGATATTTGTGTGAAAGTCAAGGG]
consensusID : consensus_593#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence
[AANGGNNTATTNTNNNTNAAANNATTNNNCCNNCNNACGNGNTANTCNGGNGNTNTNTATTTACNTTNNNTGNACNNNATATNCCCCCNNANGGNTNNCCCTTTNGGNCTCANGNNTACNGGGNNNCNCTTNAAANCTTTGATAACNACTTTTCACCNGNTAACGNTAACCNTAANCGCTTGNCCNANGATTNTTCNAATCGCCNTTACGGNCNGGCGACTCCGACCNATGGAACCCTTCGGNCACTNCGGGGGATCCTTTACCCAGCGGTTGCCTGGCGTTTCGCGCCCACCGGCGGCGACAGCCAGGCGTCCATACCTCGGGAACGTGCAGCAGCGCTCGTTCGAGGTGCGCTTCGACGGCAGTCACCGTACGGCTTCATGCCCGCCTCCTGCTGATCGATCCATCCTAACAACTAACCCACGACAGTATTCTTCTTTAGTACGTACATGGCGTATAGGTGTATAGATATACGCGTACAATGTACGTACGTACACGAGGATGATAGGCGCATATACATAACATAACACTAGTAGTAGGAGAGTACATAGTACACAAATACACAAAGGTTGTAAGGCATAGTACTTTCGTTAGTGGATATACGATT]
[-] EMBL BE229027 [AANGGNNTATTNTNNNTNAAANNATTNNNCCNNCNNACGNGNTANTCNGGNGNTNTNTATTTACNTTNNNTGNACNNNATATNCCCCCNNANGGNTNNCCCTTTNGGNCTCANGNNTACNGGGNNNCNCTTNAAANCTTTGATAACNACTTTTCACCNGNTAACGNTAACCNTAANCGCTTGNCCNANGATTNTTCNAATCGCCNTTACGGNCNGGCGACTCCGACCNATGGAACCCTTCGGNCACTNCGGGGGATCCTTTACCCAGCGGTTGCCTGGCGTTTCGCGCCCACCGGCGGCGACAGCCAGGCGTCCATACCTCGGGAACGTGCAGCAGCGCTCGTTCGAGGTGCGCTTCGACGGCAGTCACCGTACGGCTTCATGCCCGCCTCCTGCTGATCGATCCATCCTAACAACTAACCCACGACAGTATTCTTCTTTAGTACGTACATGGCGTATAGGTGTATAGATATACGCGTACAATGTACGTACGTACACGAGGATGATAGGCGCATATACATAACATAACACTAGTAGTAGGAGAGTACATAGTACACAAATACACAAAGGTTGTAAGGCATAGTACTTTCGTTAGTGGATATACGATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_593#0 CTGGGCGGGCCGAGCAGCACCGCCGGCTTCTCCACGACGCCGCTGCTGACGGCGTCGAAC 60
consensus_593#1 ------------------------------------------------------------
consensus_593#0 GACCCGACATACTACATCGTGATGCTCGCCGGCATCAGCGTCGGCGGGCAGCCGCTGAGC 120
consensus_593#1 -------------------------------------------------AANGGNNTATT 11
* * *
consensus_593#0 ATCGACGCGTCCGTGTTCGCGTCGGGCGCGGTGGTCGACACGGGCACGGTGGTCACGCGG 180
consensus_593#1 NTNNNTNAAANNATTNNNCCNNCNNACGNGNTANTCNG-------GNGNTNTNTATTTAC 64
* * * * ** * * ** * * *
consensus_593#0 CTGCCGCCCACGGCGTACTCGGCGCTGCGGTCCGCGTTCCGCGCCGCCATGGCCCCCTAC 240
consensus_593#1 NTTNNNTGNACNNNATATNCCCCCNNANGGNTNNCCCTTTNGGNC-TCANGNNTACNGGG 123
* ** ** * * ** * * * * ** * *
consensus_593#0 GGCTACCCGTCGGCGCCGGCGACGGGGATCCTGGACACCTGCTACGACTTCACCCGGTAC 300
consensus_593#1 NNNCNCTTNAAANCTTTGATAACNA-----CTTTTCACCNGNTA-ACGNTAACCNTAANC 177
* * * ** ** **** * ** * *** *
consensus_593#0 GGCACCGTGACGCTGCCGACGATCTCGATCGCG-TTCGGCGGCGGCGCGGCCATGGACCT 359
consensus_593#1 GCTTGNCCNANGATTNTTCNAATCGCCNTTACGGNCNGGCGACTCCG-ACCNATGGAACC 236
* * * * *** * * ** **** * ** * ***** *
consensus_593#0 C----GGCACGTCGGGG-ATCCTCA--CCAGCGGGTGCCTGGCGTT-CGCGCCCACCGGC 411
consensus_593#1 CTTCGGNCACTNCGGGGGATCCTTTACCCAGCGGTTGCCTGGCGTTTCGCGCCCACCGGC 296
* * *** ***** ***** ******* *********** *************
consensus_593#0 GGCGACAGCCAGGCGTCCAT-CCTCGGGAACGTGCAGCAGCGCTCGTTCGAGGTGCGCTT 470
consensus_593#1 GGCGACAGCCAGGCGTCCATACCTCGGGAACGTGCAGCAGCGCTCGTTCGAGGTGCGCTT 356
******************** ***************************************
consensus_593#0 CGACGGCAG-CACCGT-CGGCTTCATGCCCGCCTCCTGCTGATCGATCCATCCTAACAAC 528
consensus_593#1 CGACGGCAGTCACCGTACGGCTTCATGCCCGCCTCCTGCTGATCGATCCATCCTAACAAC 416
********* ****** *******************************************
consensus_593#0 TCACCCACGACAGTATTCTTCTTTAGTACGTACATGGCGTATAGGTGTATAGATATACGC 588
consensus_593#1 TAACCCACGACAGTATTCTTCTTTAGTACGTACATGGCGTATAGGTGTATAGATATACGC 476
* **********************************************************
consensus_593#0 GTACAATGTACGTACGTACACGAGGATGATAGGCGCATATACATAACATAACACTAGTAG 648
consensus_593#1 GTACAATGTACGTACGTACACGAGGATGATAGGCGCATATACATAACATAACACTAGTAG 536
************************************************************
consensus_593#0 TAGGAGAGTACATAGTACACAAATACACAAAGGTTGTAAGGCATAGTACTTTCGTTAGTG 708
consensus_593#1 TAGGAGAGTACATAGTACACAAATACACAAAGGTTGTAAGGCATAGTACTTTCGTTAGTG 596
************************************************************
consensus_593#0 GATATACGATTTTTGAGAGTAATAATAATAAATTAGTTAAACGGGCTAACCATGTGCACG 768
consensus_593#1 GATATACGATT------------------------------------------------- 607
***********
consensus_593#0 TGTTAGGCGCTTGACACGCTTGGTTTGATTTGGTGCGTCGTGGTCAGTGGCACGGTGCTC 828
consensus_593#1 ------------------------------------------------------------
consensus_593#0 AACTGATGTGCTACGACTAAAAGTCTAAAACTAGTGGACAGTTAGGGGGACGTGTGGGAC 888
consensus_593#1 ------------------------------------------------------------
consensus_593#0 TGTGGGGCCACCTCGTTCTGTTGTGCATTGTGGCTGCTGTGGCCCAAGGCCCAGAGAGAA 948
consensus_593#1 ------------------------------------------------------------
consensus_593#0 AACGTTATCTTTTTTTTTAATCTCGTAGATAATGCTGGATCTGTATTGTTGATGGTTGTT 1008
consensus_593#1 ------------------------------------------------------------
consensus_593#0 AGCCGAACATTCACCTGATATTTGTGTGAAAGTCAAGGG 1047
consensus_593#1 ---------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||