These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5940#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1012 fasta sequence [AGGGCAAGCCACCGACAGCCACAGCCTCGCCGAGCGGGCGAGACGCGAGAAGATCAATGCGAGGATGGAGCTTCTCAAGGAGCTGGTCCCCGGATGCAGTAAGGTATCAGGAACAGCACTGGTACTGGATGAGATCATCAATCATGTCCAATCTCTTCAAAGGCAAGTTGAGTACTTGTCAATGAGGCTCGCAGCTGTAAATCCGAGGGTCGACTTTGGTGGGCTAGACAACTTCTTGACTACGGAGTGTGGAAGGATAACAGGCTTGAACTACAAGAATGGAATGGATTTGGAGCAGGTCACCTGGCCAGACATGGGCGTCCATGGAGCAAGGAATCTCATGCAACTACAACAGCAGTTCTGGCATGGTGATTTAGCACACCCGCTCCAGCCGCCTTCACAGTGGGAAAAGCGGACGGATACCAATCCCCCTGTCTTTAGCAATTCAAGTTCCTCCCTCTTCGGCTATGATCTAGCAAGCTCTGGAGCGCCGGCCCAGACAGGCAACAAGCTAAAGACGGAGCTGTGAGCCTGTGACCAACGGTGGTGGTAGTGATAGCAAGCAGGTCAGCAGAGCAAGCCAAACAAACATACGTGAGCTGTGGACAATGGCGGCTGGATGTCAGGAGAGCTAGCTAGCTAGCTAGGCGTGAGCTGTGGACTGACGGCTGCTGCTGCTGCTGCTGCTGCTGTGGATGGTTGGCAACGTCTTGTGCAGTGCAGCAGTGCGGTGCATGGGACTTTCATTGATTTTGGAGGCCGGATTCTGAGACGATGTACATATGGAATGCAAGATATAGAGAGATACTGTTGTTGCTGTTGTTGGAGACTCTTGGAGCTGGAGGTGATGGATATGGAGGTTTTACTGCTGCTATCTTTTTTTGTAGAGATGAGCGAGAGATACTGTGGATTCTTTTCTTGCTGATGTATTCTTGGTGTATGCCTGACTACGATGGTTTAATGTCAAGGTTATATGAGCAGCATTTATTTGGTGAACAAAAAAAAAAAAAAA] [+] EMBL AK070970 [AGGGCAAGCCACCGACAGCCACAGCCTCGCCGAGCGGGCGAGACGCGAGAAGATCAATGCGAGGATGGAGCTTCTCAAGGAGCTGGTCCCCGGATGCAGTAAGGTATCAGGAACAGCACTGGTACTGGATGAGATCATCAATCATGTCCAATCTCTTCAAAGGCAAGTTGAGTACTTGTCAATGAGGCTCGCAGCTGTAAATCCGAGGGTCGACTTTGGTGGGCTAGACAACTTCTTGACTACGGAGTGTGGAAGGATAACAGGCTTGAACTACAAGAATGGAATGGATTTGGAGCAGGTCACCTGGCCAGACATGGGCGTCCATGGAGCAAGGAATCTCATGCAACTACAACAGCAGTTCTGGCATGGTGATTTAGCACACCCGCTCCAGCCGCCTTCACAGTGGGAAAAGCGGACGGATACCAATCCCCCTGTCTTTAGCAATTCAAGTTCCTCCCTCTTCGGCTATGATCTAGCAAGCTCTGGAGCGCCGGCCCAGACAGGCAACAAGCTAAAGACGGAGCTGTGAGCCTGTGACCAACGGTGGTGGTAGTGATAGCAAGCAGGTCAGCAGAGCAAGCCAAACAAACATACGTGAGCTGTGGACAATGGCGGCTGGATGTCAGGAGAGCTAGCTAGCTAGCTAGGCGTGAGCTGTGGACTGACGGCTGCTGCTGCTGCTGCTGCTGCTGTGGATGGTTGGCAACGTCTTGTGCAGTGCAGCAGTGCGGTGCATGGGACTTTCATTGATTTTGGAGGCCGGATTCTGAGACGATGTACATATGGAATGCAAGATATAGAGAGATACTGTTGTTGCTGTTGTTGGAGACTCTTGGAGCTGGAGGTGATGGATATGGAGGTTTTACTGCTGCTATCTTTTTTTGTAGAGATGAGCGAGAGATACTGTGGATTCTTTTCTTGCTGATGTATTCTTGGTGTATGCCTGACTACGATGGTTTAATGTCAAGGTTATATGAGCAGCAT ] [+] EMBL AU182326 [ AGAGCAAGCCAAACAAACATACGTGAGCTGTGGACAATGGCGGCTGGATGTCAGGAGAGCTAGCTAGCTAGCTAGGCGTGAGCTGTGGACTGACGGCTGCTGCTGCTGCTGCTGCTGCTGTGGATGGTTGGCAACGTCTTGTGCAGTGCAGCAGTGCGGTGCATGGGACTTTCATTGATTTTGGAGGCCGGATTNTGAGACGATGTACATATGGAATGCAAGATATAGAGAGATACTGTTGTTGCTGTTGTTGGAGACTCTTGGAGCTGGAGGTGATGGATATGGAGGTTTTACTGCTGCTATCCTTTTTTGTAGAGATGAGCGAGAGATACTGTGGATTCTTTTCTTGCTGATGTATTCTTGGTGTATGCCTGACTACGATGGTTTAATGTCAAGGTTATATGAGCAGCATTTATTTGGTGAACAAAAAAAAAAAAAAA] consensusID : consensus_5940#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 371 fasta sequence [CACTGGTACTGGATGAGATCATCAATCATGTCCAATCTCTTCAAAGGCAAGTTGAGTACTTGTCAATGAGGCTCGCAGCTGTAAATCCGAGGGTCGACTTTGGTGGGCTAGACAACTTCTTGACTACGGAGGTACCATTATGACAAATACTGTTTCTTGAAGATTTCTGCAAGTTTAGCTTNCGTGGATTTACAACAACAATTTCCTGTGTATATGTATTGCTCCCTTCTTGCCCACATATCGACCTTTTTTTTTAATACTGGGAAAATGCTTTGATACTTCGCCAATACGCATATATCCGGTATCAGTTGCCTATTGGGATACTGAGATGGGCAGTTTAGGGGAAGTATCAGTGGATCCATAGACCATAG] [+] EMBL C72700 [CACTGGTACTGGATGAGATCATCAATCATGTCCAATCTCTTCAAAGGCAAGTTGAGTACTTGTCAATGAGGCTCGCAGCTGTAAATCCGAGGGTCGACTTTGGTGGGCTAGACAACTTCTTGACTACGGAGGTACCATTATGACAAATACTGTTTCTTGAAGATTTCTGCAAGTTTAGCTTNCGTGGATTTACAACAACAATTTCCTGTGTATATGTATTGCTCCCTTCTTGCCCACATATCGACCTTTTTTTTTAATACTGGGAAAATGCTTTGATACTTCGCCAATACGCATATATCCGGTATCAGTTGCCTATTGGGATACTGAGATGGGCAGTTTAGGGGAAGTATCAGTGGATCCATAGACCATAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5940#0 AGGGCAAGCCACCGACAGCCACAGCCTCGCCGAGCGGGCGAGACGCGAGAAGATCAATGC 60 consensus_5940#1 ------------------------------------------------------------ consensus_5940#0 GAGGATGGAGCTTCTCAAGGAGCTGGTCCCCGGATGCAGTAAGGTATCAGGAACAGCACT 120 consensus_5940#1 --------------------------------------------------------CACT 4 **** consensus_5940#0 GGTACTGGATGAGATCATCAATCATGTCCAATCTCTTCAAAGGCAAGTTGAGTACTTGTC 180 consensus_5940#1 GGTACTGGATGAGATCATCAATCATGTCCAATCTCTTCAAAGGCAAGTTGAGTACTTGTC 64 ************************************************************ consensus_5940#0 AATGAGGCTCGCAGCTGTAAATCCGAGGGTCGACTTTGGTGGGCTAGACAACTTCTTGAC 240 consensus_5940#1 AATGAGGCTCGCAGCTGTAAATCCGAGGGTCGACTTTGGTGGGCTAGACAACTTCTTGAC 124 ************************************************************ consensus_5940#0 TACGGAGTGTGGAAGGATAACAGGCTTGAACTACAAGAATGGAATGGATTTGGAGCAGGT 300 consensus_5940#1 TACGGAG-GTACCATTATGACAAAT-----------------ACTGTTTCTTGAAGATTT 166 ******* ** * ** *** * ** * * ** * * consensus_5940#0 CACCTGGCCAGACATGGGCGTCCATGGAGCAAGGAATCTCATGCAACTACAACAGCAGTT 360 consensus_5940#1 CTGCAAGTTTAGCTTNCGTGGATTTACAACAAC-AATTTCCTGTGTATATG-TATTGCTC 224 * * * * * * * * * *** *** ** ** ** * * consensus_5940#0 CTGGCATGGTGATTTAGCACACCCGCTCCAGCCGCCTTCACAGTGGGAAAAGCGGACGGA 420 consensus_5940#1 CCTTCTTGCCCACATATCG-ACCTTTTT------TTTTAATACTGGGAAAA-TGCTTTGA 276 * * ** * ** * *** * ** * * ******** * ** consensus_5940#0 TACCAATCCCCCTGTCTTTAGCAATTCAAGTTC--CTCCCTCTTCGGCTA-TGATCTAGC 477 consensus_5940#1 TAC---TTCGCCAATACGCATATATCCGGTATCAGTTGCCTATTGGGATACTGAGATGGG 333 *** * * ** * * ** * ** * *** ** ** ** *** * * consensus_5940#0 AAGCTCTGGAGCGCCGGCCCAGACAGGCAACAAGCTAAAGACGGAGCTGTGAGCCTGTGA 537 consensus_5940#1 CAGTTTAGGGGAA--GTATCAGTGGATCCATAGACCATAG-------------------- 371 ** * ** * * *** * * * * * ** consensus_5940#0 CCAACGGTGGTGGTAGTGATAGCAAGCAGGTCAGCAGAGCAAGCCAAACAAACATACGTG 597 consensus_5940#1 ------------------------------------------------------------ consensus_5940#0 AGCTGTGGACAATGGCGGCTGGATGTCAGGAGAGCTAGCTAGCTAGCTAGGCGTGAGCTG 657 consensus_5940#1 ------------------------------------------------------------ consensus_5940#0 TGGACTGACGGCTGCTGCTGCTGCTGCTGCTGCTGTGGATGGTTGGCAACGTCTTGTGCA 717 consensus_5940#1 ------------------------------------------------------------ consensus_5940#0 GTGCAGCAGTGCGGTGCATGGGACTTTCATTGATTTTGGAGGCCGGATTCTGAGACGATG 777 consensus_5940#1 ------------------------------------------------------------ consensus_5940#0 TACATATGGAATGCAAGATATAGAGAGATACTGTTGTTGCTGTTGTTGGAGACTCTTGGA 837 consensus_5940#1 ------------------------------------------------------------ consensus_5940#0 GCTGGAGGTGATGGATATGGAGGTTTTACTGCTGCTATCTTTTTTTGTAGAGATGAGCGA 897 consensus_5940#1 ------------------------------------------------------------ consensus_5940#0 GAGATACTGTGGATTCTTTTCTTGCTGATGTATTCTTGGTGTATGCCTGACTACGATGGT 957 consensus_5940#1 ------------------------------------------------------------ consensus_5940#0 TTAATGTCAAGGTTATATGAGCAGCATTTATTTGGTGAACAAAAAAAAAAAAAAA 1012 consensus_5940#1 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||