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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5945#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1550 fasta sequence
[TTGCTCCCGGAAATTCTCTCCCGAACCCGATTTTTTTATTATTCCCCCCCGATATCCTGATCCGGCCGCCACCGCCGCCTCCGCCCCCTCGCCGCCGCCGGAGCCCCGCCTTGAAGCGGAGGAGCCATCCCGCGCTCGTCGGAGGCACCGGTGTGTGTGTGTGTGACGGCGACGGCCTCCTCCCCGCACGCGCACGTCGGCGAGAAGGTCTGGTGGGGCGACGCGCGCGGCCTCCGTGTCTCTCGGCTTGGATTGGAATCGAATTGAAGATGCTGGAACTGGAGCTGTCCTATAGGCTATAGAAAGAGAAATTTATTCATGTAGTGTAATACATATGTTTGGATCCGTGTCGGCGTGATAAGGAATCGTGTCGAATTGGTACCAGAAGGTTGAAAAGATGGCTGATGAGGTGGCTTTTGAGACTGCCAGGAAGATCATCATGCACCCGCTTTATACGCCGAGGTCTTCGCCGTGGCTTGACTTGAAGGTGTTCTATGTAAGGGTGAGCAATTGCGAGGTGGATGAGTCTGCGCCGGACCGTCTCACGCTCAACCACATCCCGCTGTCTCCCGATACGGTTATCGAGGTGAATGGTCAGCGGAGTAGCATGCACACCGAGTTCATCTCTTCATCCCTCAGGAGGGACAGGGTTGACAAAATGACCGAGGAGGCTACATTCGTGAGCACAGATAGTATAAGGATGACAGGGAGTGTCAGGTTTCAGGTGTTCGATAAGAACGATCTGCTGCTCACAGGCGACCTAGAGTTGTGCAGTGCCAATGGAGTTGTCGGGGAATCGAAGAACAGCAGCAAGAGATGGAATATGAAGTGCCAACCAGCATCATCATGCAATGGTTTTCTCAAGGGGAAGCCGTCCACAGCTTCAGAGTCTGTACATCCTGTGATAGAGGTTTATCTTGCTGGCACTTTCTGTGGCACACCTATTATATTAACAAAGACTGTGCAGCATATATCACGGAGGAAATCCCAAATGAAACTAAAGCTTGATTCCATCCCTGAGAATGAGGCAACTGAACAACAAAAAGAAGAGTTAAATGAGGACTCTTTGCAGGTACCTGCTAAGCATGTTTGAAAGTTTTTATTTGTCTACAATCTCAAACTCCCCATTTAGGGTTTTAGGTAGTCTATAGTCTCATATTTGGGAGGTGATGGATAGCTTTGAATTCAAGAGACTCCTTTTCCCCCTAAAAAGCAGTGAGGCAACTGTGCATAAGAAACAGTGAAATAGTTTGAGCATTTTTTTGCAGCATGTTAGTTTAGCTAAGAGCCAACTACAGATAACATATGTTTCAATATGAGGAGTATAAACAGACCCTTTTAAATTTTCCAATGCATATACGTGTTGTTATGCAAGTTTCTGTGAAAACAACACTATATCACCATAGCCATGTCATTTCCCATGTTCTCTTTTACAAGGATAACAGAGAGACTAGAATCAGTCTAGGAACAGTTGTTAATCCTTATATAAGCTCAATTATCAGTACTTGTACCATATTCATATACAGTGCAAGTTGCAAAATACATGGAGG]
[+] EMBL AK106362 [TTGCTCCCGGAAATTCTCTCCCGAACCCGATTTTTTTATTATTCCCCCCCGATATCCTGATCCGGCCGCCACCGCCGCCTCCGCCCCCTCGCCGCCGCCGGAGCCCCGCCTTGAAGCGGAGGAGCCATCCCGCGCTCGTCGGAGGCACCGGTGTGTGTGTGTGTGACGGCGACGGCCTCCTCCCCGCACGCGCACGTCGGCGAGAAGGTCTGGTGGGGCGACGCGCGCGGCCTCCGTGTCTCTCGGCTTGGATTGGAATCGAATTGAAGATGCTGGAACTGGAGCTGTCCTATAGGCTATAGAAAGAGAAATTTATTCATGTAGTGTAATACATATGTTTGGATCCGTGTCGGCGTGATAAGGAATCGTGTCGAATTGGTACCAGAAGGTTGAAAAGATGGCTGATGAGGTGGCTTTTGAGACTGCCAGGAAGATCATCATGCACCCGCTTTATACGCCGAGGTCTTCGCCGTGGCTTGACTTGAAGGTGTTCTATGTAAGGGTGAGCAATTGCGAGGTGGATGAGTCTGCGCCGGACCGTCTCACGCTCAACCACATCCCGCTGTCTCCCGATACGGTTATCGAGGTGAATGGTCAGCGGAGTAGCATGCACACCGAGTTCATCTCTTCATCCCTCAGGAGGGACAGGGTTGACAAAATGACCGAGGAGGCTACATTCGTGAGCACAGATAGTATAAGGATGACAGGGAGTGTCAGGTTTCAGGTGTTCGATAAGAACGATCTGCTGCTCACAGGCGACCTAGAGTTGTGCAGTGCCAATGGAGTTGTCGGGGAATCGAAGAACAGCAGCAAGAGATGGAATATGAAGTGCCAACCAGCATCATCATGCAATGGTTTTCTCAAGGGGAAGCCGTCCACAGCTTCAGAGTCTGTACATCCTGTGATAGAGGTTTATCTTGCTGGCACTTTCTGTGGCACACCTATTATATTAACAAAGACTGTGCAGCATATATCACGGAGGAAATCCCAAATGAAACTAAAGCTTGATTCCATCCCTGAGAATGAGGCAACTGAACAACAAAAAGAAGAGTTAAATGAGGACTCTTTGCAGGTACCTGCTAAGCATGTTTGAAAGTTTTTATTTGTCTACAATCTCAAACTCCCCATTTAGGGTTTTAGGTAGTCTATAGTCTCATATTTGGGAGGTGATGGATAGCTTTGAATTCAAGAGACTCCTTTTCCCCCTAAAAAGCAGTGAGGCAACTGTGCATAAGAAACAGTGAAATAGTTTGAGCATTTTTTTGCAGCATGTTAGTTTAGCTAAGAGCCAACTACAGATAACATATGTTTCAATATGAGGAGTATAAACAGACCCTTTTAAATTTTCCAATGCATATACGTGTTGTTATGCAAGTTTCTGTGAAAACAACACTATATCACCATAGCCATGTCATTTCCCATGTTCTCTTTTACAAGGATAACAGAGAGACTAGAATCAGTCTAGGAACAGTTGTTAATCCTTATATAAGCTCAATTATCAGTACTTGTACCATATTCATATACAGTGCAAGTTGCAAAATACATGGAGG]
consensusID : consensus_5945#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1490 fasta sequence
[CCCCCGATATCCTGATCCGGCCGCCACCGCCGCCTCCGCCCCCTCGCCGCCGCCGGAGCCCCGCCTCGAAGCGGAGGAGCCATCCCGCGCTCGTCGGAGGCACCGGTGTGTGTGTGTGTGACGGCGACGGCCTCCTCCCCGCACGCGCACGTCGGCGAGAAGGTCTGGTGGGGCGACGCGCGCGGCCTCCGTGTCTCTCGGCTTGGATTGGAATCGAATTGAAGATGCTGGAACTGGAGCTGTCCTATAGGCTATAGAAAGAGAAATTTATTCATGTAGTGTAATACATATGTTTGGATCCGTGTCGGCGTGATAAGGAATCGTGTCGAATTGGTACCAGAAGGTTGAAAAGATGGCTGATGAGGTGGCTTTTGAGACTGCCAGGAAGATCATCATGCACCCGCTTTATACGCCGAGGTCTTCGCCGTGGCTTGACTTGAAGGTGTTCTATGTAAGGGTGAGCAATTGCGAGGTGGATGAGTCTGCGCCGGACCGTCTCACGCTCAACCACATCCCGCTGTCTCCCGATACGGTTATCGAGGTGAATGGTCAGCGGAGTAGCATGCACACCGAGTTCATCTCTTCATCCCTCAGGAGGGACAGGGTTGACAAAATGACCGAGGAGGCTACATTCGTGAGCACAGATAGTATAAGGATGACAGGGAGTGTCAGGTTTCAGGTGTTCGATAAGAACGATCTGCTGCTCACAGGCGACCTAGAGTTGTGCAGTGCCAATGGAGTTGTCGGGGAATCGAAGAACAGCAGCAAGAGATGGAATATGAAGTGCCAACCAGCATCATCATGCAATGGTTTTCTCAAGGGGAAGCCGTCCACAGCTTCAGAGTCTGTACATCCTGTGATAGAGGTTTATCTTGCTGGCACTTTCTGTGGCACACCTATTATATTAACAAAGACTGTGCAGCATATATCACGGAGGAAATCCCAAATGAAACTAAAGCTTGATTCCATCCCTGAGAATGAGGCAACTGAACAACAAAAAGAAGAGTTAAATGAGGACTCTTTGCAGGTATCAGAATCACAGAATCCCAAATCTGAGCAAGATGTGGATGTTGATTATAACAGCTTGTACTCGAGGCAGGACTTTATAGAGGGCGAGGACGGTGAGCTTTCATGGTTTAATGCTGGTGTCCGAGTTGGGGTTGGGATTGGCCTTGGTATTTGTGTGGGTGTTGGATTGGGTGTTGGCCTGCTGGTCCGGACGTACCAAAGCACCAGTAGGAACTTCAGGCGGCGATTGCCCTGATGGCCAGACCACCCCATGAATGTAGATGTGTCTTTATCTTGTTCTGTAGGGAACTAACTGTCCAACCATCTTTCCTGTTCATGC-TTGTGGTAGATAT-AAGTGAGGC-TTTTTGTTCTTCGATTCTGCAGTCACTCTGGAATCTGTTGCTCTC-TTGTCTGCAA-TGCCAATCA-TTTTTGCTCCCTTGAGA-TGTAAATATTAGTCTGTATGGCAAATAAAGAGTCGAATC]
[+] EMBL AK066707 [CCCCCGATATCCTGATCCGGCCGCCACCGCCGCCTCCGCCCCCTCGCCGCCGCCGGAGCCCCGCCTCGAAGCGGAGGAGCCATCCCGCGCTCGTCGGAGGCACCGGTGTGTGTGTGTGTGACGGCGACGGCCTCCTCCCCGCACGCGCACGTCGGCGAGAAGGTCTGGTGGGGCGACGCGCGCGGCCTCCGTGTCTCTCGGCTTGGATTGGAATCGAATTGAAGATGCTGGAACTGGAGCTGTCCTATAGGCTATAGAAAGAGAAATTTATTCATGTAGTGTAATACATATGTTTGGATCCGTGTCGGCGTGATAAGGAATCGTGTCGAATTGGTACCAGAAGGTTGAAAAGATGGCTGATGAGGTGGCTTTTGAGACTGCCAGGAAGATCATCATGCACCCGCTTTATACGCCGAGGTCTTCGCCGTGGCTTGACTTGAAGGTGTTCTATGTAAGGGTGAGCAATTGCGAGGTGGATGAGTCTGCGCCGGACCGTCTCACGCTCAACCACATCCCGCTGTCTCCCGATACGGTTATCGAGGTGAATGGTCAGCGGAGTAGCATGCACACCGAGTTCATCTCTTCATCCCTCAGGAGGGACAGGGTTGACAAAATGACCGAGGAGGCTACATTCGTGAGCACAGATAGTATAAGGATGACAGGGAGTGTCAGGTTTCAGGTGTTCGATAAGAACGATCTGCTGCTCACAGGCGACCTAGAGTTGTGCAGTGCCAATGGAGTTGTCGGGGAATCGAAGAACAGCAGCAAGAGATGGAATATGAAGTGCCAACCAGCATCATCATGCAATGGTTTTCTCAAGGGGAAGCCGTCCACAGCTTCAGAGTCTGTACATCCTGTGATAGAGGTTTATCTTGCTGGCACTTTCTGTGGCACACCTATTATATTAACAAAGACTGTGCAGCATATATCACGGAGGAAATCCCAAATGAAACTAAAGCTTGATTCCATCCCTGAGAATGAGGCAACTGAACAACAAAAAGAAGAGTTAAATGAGGACTCTTTGCAGGTATCAGAATCACAGAATCCCAAATCTGAGCAAGATGTGGATGTTGATTATAACAGCTTGTACTCGAGGCAGGACTTTATAGAGGGCGAGGACGGTGAGCTTTCATGGTTTAATGCTGGTGTCCGAGTTGGGGTTGGGATTGGCCTTGGTATTTGTGTGGGTGTTGGATTGGGTGTTGGCCTGCTGGTCCGGACGTACCAAAGCACCAGTAGGAACTTCAGGCGGCGATTGCCCTGATGGCCAGACCACCCCATGAATGTAGATGTGTCTTTATCTTGTTCTGTAGGGAACTAACTGTCCAACCATCTTTCCTGTTCATGC TTGTGGTAGATAT AAGTGAGGC TTTTTGTTCTTCGATTCTGCAGTCACTCTGGAATCTGTTGCTCTC TTGTCTGCAA TGCCAATCA TTTTTGCTCCCTTGAGA TGTAAATATTAGTCTGTATGGCAAATAAAGAGTCGAATC]
[+] EMBL OSC29161 [ AGAGTTAAATGAGGACTCTTTGCAGGTATCAGAATCACAGAATCCCAAATCTGAGCAAGATGTGGATGTTGATTATAACAGCTTGTACTCGAGGCAGGACTTTATAGAGGGCGAGGACGGTGAGCTTTCATGGTTTAATGCTGGTGTCCGAGTTGGGGTTGGGATTGGCCTTGGTATTTGTGTNGGTGTTGGATTGGGTGTTGGCCTACTGGTCCGGACGTACCAAAGCACCAGTAGGAACTTCAGGCGGCGATTGCCCTNATGGCCAGACCACCCCATGAATGTAGATGTGTCTTTATCTTGTTCTGTAGGGAACTAACTGTCCAACCATCTTTCCTGTTCATGCTTTTTNGTAGATATAAAGTNAGGCTTTTTTGTTCTTCGTTTCTGCAGTCACTCTGGAATCTGTTGCTCTCTTTGTCTGCAANTGCCAATCANTTTTTGCTCCCTTGAGATTGTAAAaa ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5945#0 TTGCTCCCGGAAATTCTCTCCCGAACCCGATTTTTTTATTATTCCCCCCCGATATCCTGA 60
consensus_5945#1 ---------------------------------------------CCCCCGATATCCTGA 15
***************
consensus_5945#0 TCCGGCCGCCACCGCCGCCTCCGCCCCCTCGCCGCCGCCGGAGCCCCGCCTTGAAGCGGA 120
consensus_5945#1 TCCGGCCGCCACCGCCGCCTCCGCCCCCTCGCCGCCGCCGGAGCCCCGCCTCGAAGCGGA 75
*************************************************** ********
consensus_5945#0 GGAGCCATCCCGCGCTCGTCGGAGGCACCGGTGTGTGTGTGTGTGACGGCGACGGCCTCC 180
consensus_5945#1 GGAGCCATCCCGCGCTCGTCGGAGGCACCGGTGTGTGTGTGTGTGACGGCGACGGCCTCC 135
************************************************************
consensus_5945#0 TCCCCGCACGCGCACGTCGGCGAGAAGGTCTGGTGGGGCGACGCGCGCGGCCTCCGTGTC 240
consensus_5945#1 TCCCCGCACGCGCACGTCGGCGAGAAGGTCTGGTGGGGCGACGCGCGCGGCCTCCGTGTC 195
************************************************************
consensus_5945#0 TCTCGGCTTGGATTGGAATCGAATTGAAGATGCTGGAACTGGAGCTGTCCTATAGGCTAT 300
consensus_5945#1 TCTCGGCTTGGATTGGAATCGAATTGAAGATGCTGGAACTGGAGCTGTCCTATAGGCTAT 255
************************************************************
consensus_5945#0 AGAAAGAGAAATTTATTCATGTAGTGTAATACATATGTTTGGATCCGTGTCGGCGTGATA 360
consensus_5945#1 AGAAAGAGAAATTTATTCATGTAGTGTAATACATATGTTTGGATCCGTGTCGGCGTGATA 315
************************************************************
consensus_5945#0 AGGAATCGTGTCGAATTGGTACCAGAAGGTTGAAAAGATGGCTGATGAGGTGGCTTTTGA 420
consensus_5945#1 AGGAATCGTGTCGAATTGGTACCAGAAGGTTGAAAAGATGGCTGATGAGGTGGCTTTTGA 375
************************************************************
consensus_5945#0 GACTGCCAGGAAGATCATCATGCACCCGCTTTATACGCCGAGGTCTTCGCCGTGGCTTGA 480
consensus_5945#1 GACTGCCAGGAAGATCATCATGCACCCGCTTTATACGCCGAGGTCTTCGCCGTGGCTTGA 435
************************************************************
consensus_5945#0 CTTGAAGGTGTTCTATGTAAGGGTGAGCAATTGCGAGGTGGATGAGTCTGCGCCGGACCG 540
consensus_5945#1 CTTGAAGGTGTTCTATGTAAGGGTGAGCAATTGCGAGGTGGATGAGTCTGCGCCGGACCG 495
************************************************************
consensus_5945#0 TCTCACGCTCAACCACATCCCGCTGTCTCCCGATACGGTTATCGAGGTGAATGGTCAGCG 600
consensus_5945#1 TCTCACGCTCAACCACATCCCGCTGTCTCCCGATACGGTTATCGAGGTGAATGGTCAGCG 555
************************************************************
consensus_5945#0 GAGTAGCATGCACACCGAGTTCATCTCTTCATCCCTCAGGAGGGACAGGGTTGACAAAAT 660
consensus_5945#1 GAGTAGCATGCACACCGAGTTCATCTCTTCATCCCTCAGGAGGGACAGGGTTGACAAAAT 615
************************************************************
consensus_5945#0 GACCGAGGAGGCTACATTCGTGAGCACAGATAGTATAAGGATGACAGGGAGTGTCAGGTT 720
consensus_5945#1 GACCGAGGAGGCTACATTCGTGAGCACAGATAGTATAAGGATGACAGGGAGTGTCAGGTT 675
************************************************************
consensus_5945#0 TCAGGTGTTCGATAAGAACGATCTGCTGCTCACAGGCGACCTAGAGTTGTGCAGTGCCAA 780
consensus_5945#1 TCAGGTGTTCGATAAGAACGATCTGCTGCTCACAGGCGACCTAGAGTTGTGCAGTGCCAA 735
************************************************************
consensus_5945#0 TGGAGTTGTCGGGGAATCGAAGAACAGCAGCAAGAGATGGAATATGAAGTGCCAACCAGC 840
consensus_5945#1 TGGAGTTGTCGGGGAATCGAAGAACAGCAGCAAGAGATGGAATATGAAGTGCCAACCAGC 795
************************************************************
consensus_5945#0 ATCATCATGCAATGGTTTTCTCAAGGGGAAGCCGTCCACAGCTTCAGAGTCTGTACATCC 900
consensus_5945#1 ATCATCATGCAATGGTTTTCTCAAGGGGAAGCCGTCCACAGCTTCAGAGTCTGTACATCC 855
************************************************************
consensus_5945#0 TGTGATAGAGGTTTATCTTGCTGGCACTTTCTGTGGCACACCTATTATATTAACAAAGAC 960
consensus_5945#1 TGTGATAGAGGTTTATCTTGCTGGCACTTTCTGTGGCACACCTATTATATTAACAAAGAC 915
************************************************************
consensus_5945#0 TGTGCAGCATATATCACGGAGGAAATCCCAAATGAAACTAAAGCTTGATTCCATCCCTGA 1020
consensus_5945#1 TGTGCAGCATATATCACGGAGGAAATCCCAAATGAAACTAAAGCTTGATTCCATCCCTGA 975
************************************************************
consensus_5945#0 GAATGAGGCAACTGAACAACAAAAAGAAGAGTTAAATGAGGACTCTTTGCAGGTACCTGC 1080
consensus_5945#1 GAATGAGGCAACTGAACAACAAAAAGAAGAGTTAAATGAGGACTCTTTGCAGGTATCAGA 1035
******************************************************* * *
consensus_5945#0 TAAGCATGTTTGAAAGTTTTTATTTGTCTACAATCTCAAACTCCCCATTTAGGGTTTTAG 1140
consensus_5945#1 ATCACAGAATCCCAAATCTGAGCAAGATGTGGATGTTGATTATAACAGCTTGTACTCGAG 1095
** * ** * * * ** * * ** * * * **
consensus_5945#0 GTAGTCTATAGTCTCATATTTGGGAGGTGATGGATAGCTTTGAATTCAAGAGACTCCTTT 1200
consensus_5945#1 GCAG-----GACTTTATAGA-GGGCGAGGACGGTGAGCTTTCATGGTTTAATGCTGGTGT 1149
* ** * *** *** * ** ** ****** * * ** * *
consensus_5945#0 TCCCCCTAAAAAGCAGTGAGGCAACTGTGCATAAGAAACAGTGAAATAGTTTGAGCATTT 1260
consensus_5945#1 CCGAGTTGGGGTTGGGATTGGCCTTGGTATTTGTGTGGGTGT----TGGATTGGGTGTTG 1205
* * * *** ** * * ** * * *** * **
consensus_5945#0 TTTTGCAGCATGTTAGTTTAGCTAAGAGCCAACTACAGATAACATATGTTTCAATATGAG 1320
consensus_5945#1 GCCTGCTG-GTCCGGACGTACCAAAGCACCAG---TAGGAACTTCAGGCGGCGAT-TGCC 1260
*** * * ** * *** *** ** * * * * ** **
consensus_5945#0 GAGTATAAACAGACCCTTTTAAATTTTCCAATGCATATACGTGTTGTTATGCAAGTTTCT 1380
consensus_5945#1 CTG-ATGGCCAGACCACCCCATGAATGTAGATGTGTCTTTATCTTGTTCTGTAGGGAACT 1319
* ** ****** * * *** * * * ***** ** * * **
consensus_5945#0 GTGAAAACAACACTATATCAC---CATAGCCATGTCATTTCCCA-TGTTCTCTTTTACAA 1436
consensus_5945#1 AACTGTCCAACCATCTTTCCTGTTCATGCTTGTGGTAGATATAAGTGAGGCTTTTTGTT- 1378
**** * * ** *** ** * * * ** ****
consensus_5945#0 GGATAACAGAGAGACTAGAATCAGTCTAGGAACAGTTGTTAATCCTTATATAAGCTCAAT 1496
consensus_5945#1 ------CTTCGATTCTGCAGTCACTCTGGAATCTGTTGCTCTCTTGTCTGCAATGCCAAT 1432
* ** ** * *** *** * * * **** * * * ** ****
consensus_5945#0 TATCAGTACTTGTACCATATTCATATAC-AGTGCAAGTTGCAAAATACATGGAGG--- 1550
consensus_5945#1 CATTTTTGCTCCCTTGAGATGTAAATATTAGTCTGTATGGCAAATAAAGAGTCGAATC 1490
** * ** * ** * *** *** * ***** * * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||