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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5946#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1836 fasta sequence
[GGAGTATTTTTCGATCTGAACCAAACAAGCACATAACCAAAACCTCAAAACATGTGTAGCCAAGTTGGCTAGCTTTCACCGAGTACAGTATATACCCTACTACGGATATTGGCCGTCTGAATTGTTCTTCAGCTCATTCCAAGACGTCAAATGCTGGACAAATTCATCGATGCACCTCTCTTCGCGCTCCCTGTCCGCCACGATCTCCTGCAGCTTCCGGGCATTGGCGAAGAACGTCTTCCCCTCTTCCTCCACCACGACGGCGCGGACGGCTCCGGCGACGCCGCCTCGGTCGAACGACCCGTCCTCGTCGTTCCTCGGCACCGCCACTCCGAGCTTCCTCCCCTCGAGAATCCGCGCGTTCGGGCCTTGGTCGCCTAAGATCGGCAGCATGATCAGCGGGTGCCCGAACTGGAGCCCCTCGACGACGGAGCCCCACCCGCAGTGCGTCAGGAACGCGCACACGGCGGCGTGCGCCAGTATGCTCACCTGAGGAGCCCACCGCGTCGTGACCAGCCCGCGCTCGCCGGTGCGGCCCAGGAACCCCGCTGGTAGGACGCTGTCCGCGTCGACGCCGGCGGGCTTCCTCATGGCCCAGAGGAAGCGCGTCCCGGCGAGGTCCAGCCCGTGAGCCAGCTCGCGCAGCAGGTCCGCGCTCATCGGCGCCTCGCTTCCCAGCGCGACGTAGACGACCGACTTGGCCGGCTGAGCGTCGAGCCACTGCATGATTGCGTCGTGCTTGCCGTTCTTGCTGACGCCGCGGGCGCCGTCCGGCCGTGGCGGGAGCAGGCCGAACGGGACGACCGGCTTGCCGTAGAACCTCGTCAGGATCGTGAACGCGCCGGGCTCCAGCTCGGGGCAGCTCCGCATTGCGACGAGCTTGGACCTCTGCAGCGTCAGGCTGTAGCGGGTCATGATGGACACCCCCGAGGCGCCTTCCGTCGCGAACTCCTCCGTGGCGCGCTTCGCCTCGAAGCTCGGCGCCGCCGTGCCCATGGACCGGACTATCGCCTCGCGCTGGTCCGCGCTCGACTCGGTTGGCGGAGCAGACGAGGCCACGACGGCTGCGGAGCAGGGGAGGATCATGGCGCACGGCACCCCGCGCTCCTGAGATGCCAGAGCGACCCAGTGATGCATGAGATCGGCGAGAACCCAATCCGGCCTCTTGCCGCCGGCGCACGCGGTGTCGAGGAACGCGGAGAACGGCGCGGCGAGCCCGTCGAACGCCTTCCTGTGAAGCTCGAACTTGTCGAACGGGACGTCGCTGGTGGCCTCGGCGCCGTCGGGGAGCCCGTCGACGCGCGGCAGTGGGAGCGCCACGAGGTCGACGAGCTCTGCCAGCTCGGGGCGAACCGGCGGGAGGCGGGCGAGGTTGCGCGGGGTGGAGACGAAGGACACGCGGTGGCCGCGCGCGGCGAGGCGCTCGGCGAGGTCAAGGCAGGGGAGCAGGTGGCCGAAGGCGAGCCACGGGAAGATGACGACGTGCAGCGGCGACTGCGAGGAATGGGCGTCGTCCATTTTCGGCCGGCGCGCACCGGTCAGCACTCAGGCGTCAGCGTGTGTGTGAGAAGTTTGGCTCTGATGATCCAGTCATGAGTGTATAGGGAGTACTCCGTATGCAAATCGTGCTAGTTAAAGGGGAGAAAACGAGGAAAGATTCCCGAACGCGATGCGTATTGTCGAGCCCAGCCGAGTGCGAGGCAGCCGGGACTACTCATCTCCTCCCTCCATCTACTACCTCCCTCAAAAAAAAAAAAAAACTTTTATCCAGATTCATTATTTTAGGAGGAAACCCCTCCTTAGAGCAGGTATAATAGAGTATGATAAGCCAGCGAT]
[-] EMBL AK064270 [GGAGTATTTTTCGATCTGAACCAAACAAGCACATAACCAAAACCTCAAAACATGTGTAGCCAAGTTGGCTAGCTTTCACCGAGTACAGTATATACCCTACTACGGATATTGGCCGTCTGAATTGTTCTTCAGCTCATTCCAAGACGTCAAATGCTGGACAAATTCATCGATGCACCTCTCTTCGCGCTCCCTGTCCGCCACGATCTCCTGCAGCTTCCGGGCATTGGCGAAGAACGTCTTCCCCTCTTCCTCCACCACGACGGCGCGGACGGCTCCGGCGACGCCGCCTCGGTCGAACGACCCGTCCTCGTCGTTCCTCGGCACCGCCACTCCGAGCTTCCTCCCCTCGAGAATCCGCGCGTTCGGGCCTTGGTCGCCTAAGATCGGCAGCATGATCAGCGGGTGCCCGAACTGGAGCCCCTCGACGACGGAGCCCCACCCGCAGTGCGTCAGGAACGCGCACACGGCGGCGTGCGCCAGTATGCTCACCTGAGGAGCCCACCGCGTCGTGACCAGCCCGCGCTCGCCGGTGCGGCCCAGGAACCCCGCTGGTAGGACGCTGTCCGCGTCGACGCCGGCGGGCTTCCTCATGGCCCAGAGGAAGCGCGTCCCGGCGAGGTCCAGCCCGTGAGCCAGCTCGCGCAGCAGGTCCGCGCTCATCGGCGCCTCGCTTCCCAGCGCGACGTAGACGACCGACTTGGCCGGCTGAGCGTCGAGCCACTGCATGATTGCGTCGTGCTTGCCGTTCTTGCTGACGCCGCGGGCGCCGTCCGGCCGTGGCGGGAGCAGGCCGAACGGGACGACCGGCTTGCCGTAGAACCTCGTCAGGATCGTGAACGCGCCGGGCTCCAGCTCGGGGCAGCTCCGCATTGCGACGAGCTTGGACCTCTGCAGCGTCAGGCTGTAGCGGGTCATGATGGACACCCCCGAGGCGCCTTCCGTCGCGAACTCCTCCGTGGCGCGCTTCGCCTCGAAGCTCGGCGCCGCCGTGCCCATGGACCGGACTATCGCCTCGCGCTGGTCCGCGCTCGACTCGGTTGGCGGAGCAGACGAGGCCACGACGGCTGCGGAGCAGGGGAGGATCATGGCGCACGGCACCCCGCGCTCCTGAGATGCCAGAGCGACCCAGTGATGCATGAGATCGGCGAGAACCCAATCCGGCCTCTTGCCGCCGGCGCACGCGGTGTCGAGGAACGCGGAGAACGGCGCGGCGAGCCCGTCGAACGCCTTCCTGTGAAGCTCGAACTTGTCGAACGGGACGTCGCTGGTGGCCTCGGCGCCGTCGGGGAGCCCGTCGACGCGCGGCAGTGGGAGCGCCACGAGGTCGACGAGCTCTGCCAGCTCGGGGCGAACCGGCGGGAGGCGGGCGAGGTTGCGCGGGGTGGAGACGAAGGACACGCGGTGGCCGCGCGCGGCGAGGCGCTCGGCGAGGTCAAGGCAGGGGAGCAGGTGGCCGAAGGCGAGCCACGGGAAGATGACGACGTGCAGCGGCGACTGCGAGGAATGGGCGTCGTCCATTTTCGGCCGGCGCGCACCGGTCAGCACTCAGGCGTCAGCGTGTGTGTGA ]
[+] EMBL AK108055 [ AATGCTGGACAAATTCATCGATGCACCTCTCTTCGCGCTCCCTGTCCGCCACGATCTCCTGCAGCTTCCGGGCATTGGCGAAGAACGTCTTCCCCTCTTCCTCCACCACGACGGCGCGGACGGCTCCGGCGACGCCGCCTCGGTCGAACGACCCGTCCTCGTCGTTCCTCGGCACCGCCACTCCGAGCTTCCTCCCCTCGAGAATCCGCGCGTTCGGGCCTTGGTCGCCTAAGATCGGCAGCATGATCAGCGGGTGCCCGAACTGGAGCCCCTCGACGACGGAGCCCCACCCGCAGTGCGTCAGGAACGCGCACACGGCGGCGTGCGCCAGTATGCTCACCTGAGGAGCCCACCGCGTCGTGACCAGCCCGCGCTCGCCGGTGCGGCCCAGGAACCCCGCTGGTAGGACGCTGTCCGCGTCGACGCCGGCGGGCTTCCTCATGGCCCAGAGGAAGCGCGTCCCGGCGAGGTCCAGCCCGTGAGCCAGCTCGCGCAGCAGGTCCGCGCTCATCGGCGCCTCGCTTCCCAGCGCGACGTAGACGACCGACTTGGCCGGCTGAGCGTCGAGCCACTGCATGATTGCGTCGTGCTTGCCGTTCTTGCTGACGCCGCGGGCGCCGTCCGGCCGTGGCGGGAGCAGGCCGAACGGGACGACCGGCTTGCCGTAGAACCTCGTCAGGATCGTGAACGCGCCGGGCTCCAGCTCGGGGCAGCTCCGCATTGCGACGAGCTTGGACCTCTGCAGCGTCAGGCTGTAGCGGGTCATGATGGACACCCCCGAGGCGCCTTCCGTCGCGAACTCCTCCGTGGCGCGCTTCGCCTCGAAGCTCGGCGCCGCCGTGCCCATGGACCGGACTATCGCCTCGCGCTGGTCCGCGCTCGACTCGGTTGGCGGAGCAGACGAGGCCACGACGGCTGCGGAGCAGGGGAGGATCATGGCGCACGGCACCCCGCGCTCCTGAGATGCCAGAGCGACCCAGTGATGCATGAGATCGGCGAGAACCCAATCCGGCCTCTTGCCGCCGGCGCACGCGGTGTCGAGGAACGCGGAGAACGGCGCGGCGAGCCCGTCGAACGCCTTCCTGTGAAGCTCGAACTTGTCGAACGGGACGTCGCTGGTGGCCTCGGCGCCGTCGGGGAGCCCGTCGACGCGCGGCAGTGGGAGCGCCACGAGGTCGACGAGCTCTGCCAGCTCGGGGCGAACCGGCGGGAGGCGGGCGAGGTTGCGCGGGGTGGAGACGAAGGACACGCGGTGGCCGCGCGCGGCGAGGCGCTCGGCGAGGTCAAGGCAGGGGAGCAGGTGGCCGAAGGCGAGCCACGGGAAGATGACGACGTGCAGCGGCGACTGCGAGGAATGGGCGTCGTCCATTTTCGGCCGGCGCGCACCGGTCAGCACTCAGGCGTCAGCGTGTGTGTGAGAAGTTTGGCTCTGATGATCCAGTCATGAGTGTATAGGGAGTACTCCGTATGCAAATCGTGCTAGTTAAAGGGGAGAAAACGAGGAAAGATTCCCGAACGCGATGCGTATTGTCGAGCCCAGCCGAGTGCGAGGCAGCCGGGACTACTCATCTCCTCCCTCCATCTACTACCTCCCTCAAAAAAAAAAAAAAACTTTTATCCAGATTCATTATTTTAGGAGGAAACCCCTCCTTAGAGCAGGTATAATAGAGTATGATAAGCCAGCGAT]
consensusID : consensus_5946#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence
[TCCGGCACGCCGAAATGCGCGCACGCCGTCGCCGTGTACGGCATCATGAGGACGCAGGGAACCTTGCGGTCGGCGGCGGAGGCGGCGGCCCAGGAAAGCATGCCGTCGAGGATGAGCCAGTCGACCTTGTTCCCCGCGGCGGCGGCGGCGTCGAGGAAGGCGGAGAAGGGCGCGGTGAGCCCATCGGAGGCCTTCCAGAGAGCGGATGACATGTGATCGGGGACGTCGGTGGTGGCCTCGGCGCCGTCGGGGAGGCCGTCGACGCGCGGGAGCGGCAGCTCGACGAACTCGACGGACGGGCACGGGCGGCGGAGGCGAGCGATGTTGCGCGGGGTGGAGACGAAGGACACGCGGAGGCCGCGCGAGGCCAGGCGGCCGGCGAGCTCGAGGGCAGGGAGGAGGTGGCCGAACGCGAGCCACGGGAAGACG]
[-] EMBL AU182347 [TCCGGCACGCCGAAATGCGCGCACGCCGTCGCCGTGTACGGCATCATGAGGACGCAGGGAACCTTGCGGTCGGCGGCGGAGGCGGCGGCCCAGGAAAGCATGCCGTCGAGGATGAGCCAGTCGACCTTGTTCCCCGCGGCGGCGGCGGCGTCGAGGAAGGCGGAGAAGGGCGCGGTGAGCCCATCGGAGGCCTTCCAGAGAGCGGATGACATGTGATCGGGGACGTCGGTGGTGGCCTCGGCGCCGTCGGGGAGGCCGTCGACGCGCGGGAGCGGCAGCTCGACGAACTCGACGGACGGGCACGGGCGGCGGAGGCGAGCGATGTTGCGCGGGGTGGAGACGAAGGACACGCGGAGGCCGCGCGAGGCCAGGCGGCCGGCGAGCTCGAGGGCAGGGAGGAGGTGGCCGAACGCGAGCCACGGGAAGACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5946#0 GGAGTATTTTTCGATCTGAACCAAACAAGCACATAACCAAAACCTCAAAACATGTGTAGC 60
consensus_5946#1 ------------------------------------------------------------
consensus_5946#0 CAAGTTGGCTAGCTTTCACCGAGTACAGTATATACCCTACTACGGATATTGGCCGTCTGA 120
consensus_5946#1 ------------------------------------------------------------
consensus_5946#0 ATTGTTCTTCAGCTCATTCCAAGACGTCAAATGCTGGACAAATTCATCGATGCACCTCTC 180
consensus_5946#1 ------------------------------------------------------------
consensus_5946#0 TTCGCGCTCCCTGTCCGCCACGATCTCCTGCAGCTTCCGGGCATTGGCGAAGAACGTCTT 240
consensus_5946#1 ------------------------------------------------------------
consensus_5946#0 CCCCTCTTCCTCCACCACGACGGCGCGGACGGCTCCGGCGACGCCGCCTCGGTCGAACGA 300
consensus_5946#1 ------------------------------------------------------------
consensus_5946#0 CCCGTCCTCGTCGTTCCTCGGCACCGCCACTCCGAGCTTCCTCCCCTCGAGAATCCGCGC 360
consensus_5946#1 ------------------------------------------------------------
consensus_5946#0 GTTCGGGCCTTGGTCGCCTAAGATCGGCAGCATGATCAGCGGGTGCCCGAACTGGAGCCC 420
consensus_5946#1 ------------------------------------------------------------
consensus_5946#0 CTCGACGACGGAGCCCCACCCGCAGTGCGTCAGGAACGCGCACACGGCGGCGTGCGCCAG 480
consensus_5946#1 ------------------------------------------------------------
consensus_5946#0 TATGCTCACCTGAGGAGCCCACCGCGTCGTGACCAGCCCGCGCTCGCCGGTGCGGCCCAG 540
consensus_5946#1 ------------------------------------------------------------
consensus_5946#0 GAACCCCGCTGGTAGGACGCTGTCCGCGTCGACGCCGGCGGGCTTCCTCATGGCCCAGAG 600
consensus_5946#1 ------------------------------------------------------------
consensus_5946#0 GAAGCGCGTCCCGGCGAGGTCCAGCCCGTGAGCCAGCTCGCGCAGCAGGTCCGCGCTCAT 660
consensus_5946#1 ------------------------------------------------------------
consensus_5946#0 CGGCGCCTCGCTTCCCAGCGCGACGTAGACGACCGACTTGGCCGGCTGAGCGTCGAGCCA 720
consensus_5946#1 ------------------------------------------------------------
consensus_5946#0 CTGCATGATTGCGTCGTGCTTGCCGTTCTTGCTGACGCCGCGGGCGCCGTCCGGCCGTGG 780
consensus_5946#1 ------------------------------------------------------------
consensus_5946#0 CGGGAGCAGGCCGAACGGGACGACCGGCTTGCCGTAGAACCTCGTCAGGATCGTGAACGC 840
consensus_5946#1 ------------------------------------------------------------
consensus_5946#0 GCCGGGCTCCAGCTCGGGGCAGCTCCGCATTGCGACGAGCTTGGACCTCTGCAGCGTCAG 900
consensus_5946#1 ------------------------------------------------------------
consensus_5946#0 GCTGTAGCGGGTCATGATGGACACCCCCGAGGCGCCTTCCGTCGCGAACTCCTCCGTGGC 960
consensus_5946#1 ------------------------------------------------------------
consensus_5946#0 GCGCTTCGCCTCGAAGCTCGGCGCCGCCGTGCCCATGGACCGGACTATCGCCTCGCGCTG 1020
consensus_5946#1 ------------------------------------------------------------
consensus_5946#0 GTCCGCGCTCGACTCGGTTGGCGGAGCAGACGAGGCCACGACGGCTGCGGAGCAGGGGAG 1080
consensus_5946#1 ------------TCCGGCACGCCGAA---ATGCGCGCACGCCGTC-GCCGTGTACGGCAT 44
*** ** ** * * * **** ** * ** * * * ** *
consensus_5946#0 GATCATGGCGCACGGCACCCCGCGCTCCTGAGATGCCAGAGCGACCCAGTGATGCATGAG 1140
consensus_5946#1 CATGAGGACGCAGGGAACCTTGCGGTCGGCGGCGGAGGCGGCGGCCCAGGAAAGCATGCC 104
** * * **** ** *** *** ** * * *** ***** * *****
consensus_5946#0 ATCGGCGAGAACCCAATCCGGCCTCTTGCCGCCGGCGCACGCGGTGTCGAGGAACGCGGA 1200
consensus_5946#1 GTCGAGGATGAGCCAGTCGACCTTGTTCCCCGCGGCGGCGGCGGCGTCGAGGAAGGCGGA 164
*** ** * *** ** * * ** ** ***** **** ********* *****
consensus_5946#0 GAACGGCGCGGCGAGCCCGTCGAACGCCTTCCTGTGAAGCTCGAACTTGTCGAACGGGAC 1260
consensus_5946#1 GAAGGGCGCGGTGAGCCCATCGGAGGCCTTCCAGAGAGCGGATGACATGTGATCGGGGAC 224
*** ******* ****** *** * ******* * ** ** *** *****
consensus_5946#0 GTCGCTGGTGGCCTCGGCGCCGTCGGGGAGCCCGTCGACGCGCGGCAGTGGGAGCGCCAC 1320
consensus_5946#1 GTCGGTGGTGGCCTCGGCGCCGTCGGGGAGGCCGTCGACGCGCGGGAGCGGCAGCTCGAC 284
**** ************************* ************** ** ** *** * **
consensus_5946#0 GAGGTCGACGAGCTCTGCCAGCTCGGGGCGAACCGGCGGGAGGCGGGCGAGGTTGCGCGG 1380
consensus_5946#1 GAACTCGACGGACG-----GGCACGGG------CGGCGG-AGGCGAGCGATGTTGCGCGG 332
** ****** * ** **** ****** ***** **** *********
consensus_5946#0 GGTGGAGACGAAGGACACGCGGTGGCCGCGCGCGGCGAGGCGCTCGGCGAGGTCAAGGCA 1440
consensus_5946#1 GGTGGAGACGAAGGACACGCGGAGGCCGCGCGAGGCCAGGCGGCCGGCGAGCTCGAGGGC 392
********************** ********* *** ***** ******* ** ***
consensus_5946#0 GGGGAGCAGGTGGCCGAAGGCGAGCCACGGGAAGATGACGACGTGCAGCGGCGACTGCGA 1500
consensus_5946#1 AGGGAGGAGGTGGCCGAACGCGAGCCACGGGAAGACG----------------------- 429
***** *********** **************** *
consensus_5946#0 GGAATGGGCGTCGTCCATTTTCGGCCGGCGCGCACCGGTCAGCACTCAGGCGTCAGCGTG 1560
consensus_5946#1 ------------------------------------------------------------
consensus_5946#0 TGTGTGAGAAGTTTGGCTCTGATGATCCAGTCATGAGTGTATAGGGAGTACTCCGTATGC 1620
consensus_5946#1 ------------------------------------------------------------
consensus_5946#0 AAATCGTGCTAGTTAAAGGGGAGAAAACGAGGAAAGATTCCCGAACGCGATGCGTATTGT 1680
consensus_5946#1 ------------------------------------------------------------
consensus_5946#0 CGAGCCCAGCCGAGTGCGAGGCAGCCGGGACTACTCATCTCCTCCCTCCATCTACTACCT 1740
consensus_5946#1 ------------------------------------------------------------
consensus_5946#0 CCCTCAAAAAAAAAAAAAAACTTTTATCCAGATTCATTATTTTAGGAGGAAACCCCTCCT 1800
consensus_5946#1 ------------------------------------------------------------
consensus_5946#0 TAGAGCAGGTATAATAGAGTATGATAAGCCAGCGAT 1836
consensus_5946#1 ------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||