These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5948#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1272 fasta sequence [CGAGGCCCTCGCCGGCGCCGGCGCCGCCACGCCCATCTCCATCCCCGACCACCACTTCTTCTCCGGCGAGCTCGCCTCGGGAGACGAATCCGCAGCTCCAGAGGCAGAGAATCGAATGCTACTACCACCCGTGAAAGGTACGGTGTGTCGTGTACCGCCTTGAAATCTTAGCTGGTTCGCCGGTGATCATGCCGTGAAGCCGCCGCCGCAGGCATCTTCCCGGCGAGCGAGTTGGTAGGGGCGCTTCCACTCGCGTAGCTACGAATCTTGGCCTTCCCGGCGGCGATTGGATGGTGCCCCTGACCCTGAGGTGAATTCCAAGAAGATCCAAGAACCATCCCCTCCCCGGATGGATGACGCGGAGGCGAACATCCTCGCGTCCCTCGGCCGCGTGCGCCTCTGCGACCTCGCCGCCGCCGACGGCCTCCCGTCCGACGGCTACAAGATGTGCGTGTCGGCCCTGATGCAGTCGCTGGCGCAGTACTCGGCGGCCGTCGTCGAGCTGCCTCCGGCCGACGGCGCCCTGCTGAGGTCGGGGCTGGACTCCGCACGCCTCTTCTTCCACCAGCGAGGGTACGGATCCGGCGAGGCCGGCGGCGGCGGCGGTGGCGGCGGCTCGGGTGATGCCCGGGAGTGGTGCAAGACGTCTGGCTACTATGCTGATCCTCAGATGTGGCTGGAAATGTATGATTTCAGGCCCGGCATCACGCCGGTAGAGCCGAACGGTGTGGCGGAATTGCCGCCGTCCGGGTTGCCTGATATGTTTTCGGTGCTTGGGAAGGTTTCCCGGGAGGTCTTGGACGCGATTAGCTTCTCGCTGAATCTGCGTAGCTCCACATTTACGG-GTTGCTTGACAACATACCCTTGAGAAGCCAGGAGGTATCATCTTCTGTTCTTTCGGCATGTTGTCATTCGAGGCCGTCGATGGAAGGAGCACAGCAGCATAGCGTCGCTTCTCAGGATGATGAACAATTGCTCATGTTTTCGGATCAGGAGAACCAGATTGACAAGACTTTGCTTACGCTGGTTAAGTCGGATAGGTCGGGCCTGTATATCAAAGATTTGCAAGGGCGCTGGATTCTTGTCGATGGGGATCTTGGTCCGCTTGATATTGTTGTCTATCCTGGCCTTGCGCTTTATCGGGAAACAGCTGGCTATGTAAACCCAGCTGTGCACAAGACGGAGGTCGGCAACTTGCAGGAATGTATGTTTGGGCGGTGTTCGTTGGTGTTCAAGCTCATGCCTAGGTCAGTTGCAAGGCTGAGTGGTGAA] [+] EMBL AK072937 [CGAGGCCCTCGCCGGCGCCGGCGCCGCCACGCCCATCTCCATCCCCGACCACCACTTCTTCTCCGGCGAGCTCGCCTCGGGAGACGAATCCGCAGCTCCAGAGGCAGAGAATCGAATGCTACTACCACCCGTGAAAGGTACGGTGTGTCGTGTACCGCCTTGAAATCTTAGCTGGTTCGCCGGTGATCATGCCGTGAAGCCGCCGCCGCAGGCATCTTCCCGGCGAGCGAGTTGGTAGGGGCGCTTCCACTCGCGTAGCTACGAATCTTGGCCTTCCCGGCGGCGATTGGATGGTGCCCCTGACCCTGAGGTGAATTCCAAGAAGATCCAAGAACCATCCCCTCCCCGGATGGATGACGCGGAGGCGAACATCCTCGCGTCCCTCGGCCGCGTGCGCCTCTGCGACCTCGCCGCCGCCGACGGCCTCCCGTCCGACGGCTACAAGATGTGCGTGTCGGCCCTGATGCAGTCGCTGGCGCAGTACTCGGCGGCCGTCGTCGAGCTGCCTCCGGCCGACGGCGCCCTGCTGAGGTCGGGGCTGGACTCCGCACGCCTCTTCTTCCACCAGCGAGGGTACGGATCCGGCGAGGCCGGCGGCGGCGGCGGTGGCGGCGGCTCGGGTGATGCCCGGGAGTGGTGCAAGACGTCTGGCTACTATGCTGATCCTCAGATGTGGCTGGAAATGTATGATTTCAGGCCCGGCATCACGCCGGTAGAGCCGAACGGTGTGGCGGAATTGCCGCCGTCCGGGTTGCCTGATATGTTTTCGGTGCTTGGGAAGGTTTCCCGGGAGGTCTTGGACGCGATTAGCTTCTCGCTGAATCTGCGTAGCTCCACATTTACGG GTTGCTTGACAACATACCCTTGAGAAGCCAGGAGGTATCATCTTCTGTTCTTTCGGCATGTTGTCATTCGAGGCCGTCGATGGAAGGAGCACAGCAGCATAGCGTCGCTTCTCAGGATGATGAACAATTGCTCATGTTTTCGGATCAGGAGAACCAGATTGACAAGACTTTGCTTACGCTGGTTAAGTCGGATAGGTCGGGCCTGTATATCAAAGATTTGCAAGGGCGCTGGATTCTTGTCGATGGGGATCTTGGTCCGCTTGATATTGTTGTCTATCCTGGCCTTGCGCTTTATCGGGAAACAGCTGGCTATGTAAACCCAGCTGTGCACAAGACGGAGGTCGGCAACTTGCAGGAATGTATGTTTGGGCGGTGTTCGTTGGTGTTCAAGCTCATGCCTAGGTCAGTTGCAAGGCTGAGTGGTGAA] [+] EMBL AK067389 [ CCCTCGCCGGCGCCGGCGCCGCCACGCCCATCTCCATCCCCGACCACCACTTCTTCTCCGGCGAGCTCGCCTCGGGAGACGAATCCGCAGCTCCAGAGGCAGAGAATCGAATGCTACTACCACCCGTGAAAGGTACGGTGTGTCGTGTACCGCCTTGAAATCTTAGCTGGTTCGCCGGTGATCATGCCGTGAAGCCGCCGCCGCAGGCATCTTCCCGGCGAGCGAGTTGGTAGGGGCGCTTCCACTCGCGTAGCTACGAATCTTGGCCTTCCCGGCGGCGATTGGATGGTGCCCCTGACCCTGAGGTGAATTCCAAGAAGATCCAAGAACCATCCCCTCCCCGGATGGATGACGCGGAGGCGAACATCCTCGCGTCCCTCGGCCGCGTGCGCCTCTGCGACCTCGCCGCCGCCGACGGCCTCCCGTCCGACGGCTACAAGATGTGCGTGTCGGCCCTGATGCAGTCGCTGGCGCAGTACTCGGCGGCCGTCGTCGAGCTGCCTCCGGCCGACGGCGCCCTGCTGAGGTCGGGGCTGGACTCCGCACGCCTCTTCTTCCACCAGCGAGGGTACGGATCCGGCGAGGCCGGCGGCGGCGGCGGTGGCGGCGGCTCGGGTGATGCCCGGGAGTGGTGCAAGACGTCTGGCTACTATGCTGATCCTCAGATGTGGCTGGAAATGTATGATTTCAGGCCCGGCATCACGCCGGTAGAGCCGAACGGTGTGGCGGAATTGCCGCCGTCCGGGTTGCCTGATATGTTTTCGGTGCTTGGGAAGGTTTCCCGGGAGGTCTTGGACGCGATTAGCTTCTCGCTGAATCTGCGTAGCTCCACATTTACGGAGTTGCTTGACAACATACCCTTGAGAAGCCAGGAGGTATCATCTTCTGTTCTTTCGGCATGTTGTCATTCGAGGCCGTCGATGGAAGGAGCACAGCAGCATAGCGTCGCTTCTCAGGATGATGAACAATTGCTCATGTTTTCGGATCAGGAGAACCAGATTGACAAGACTTTGCTTACGCTGGTTAAGTCGGATAGGTCGGGCCTGTATATCAAAGATTTGCAAGGGCGCTGGATTCTTGTCGATGGGGATCTTGGTCCGCTTGATATTGTTGTCTATCCTGGCCTTGCGCTTTATCGGGAAACAGCTGGCTATGTAAACCCAGCTGTGCACAAGACGGAGGTCGGCAACTTGCAGGAATGTATGTTTGGGCGGTGTTCGTTGGTGTTCAAGCTCATGCCTAGGTCAGTTGCAAGGCTGAGTGGTGAA] consensusID : consensus_5948#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 206 fasta sequence [GGGTACGGTTCCGGCGAGGCCGGCGGCGGCGGCGGTGGCGGCGGCTCGGGTNATGCCCGGAAGTGGTGCAAGACGTCTGGCTACTATGCTGATCCTNANATGTGGCTGGAAATNTATGATTTCAGGCCCNGCATCACGCCGGTAGAGCCGAACGGTGTTGGCGGAATTGCCGCCTTCCGGTTTTCCTGANANNTTTTCGGTNCTTT] [+] EMBL AU068497 [GGGTACGGTTCCGGCGAGGCCGGCGGCGGCGGCGGTGGCGGCGGCTCGGGTNATGCCCGGAAGTGGTGCAAGACGTCTGGCTACTATGCTGATCCTNANATGTGGCTGGAAATNTATGATTTCAGGCCCNGCATCACGCCGGTAGAGCCGAACGGTGTTGGCGGAATTGCCGCCTTCCGGTTTTCCTGANANNTTTTCGGTNCTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5948#0 CGAGGCCCTCGCCGGCGCCGGCGCCGCCACGCCCATCTCCATCCCCGACCACCACTTCTT 60 consensus_5948#1 ------------------------------------------------------------ consensus_5948#0 CTCCGGCGAGCTCGCCTCGGGAGACGAATCCGCAGCTCCAGAGGCAGAGAATCGAATGCT 120 consensus_5948#1 ------------------------------------------------------------ consensus_5948#0 ACTACCACCCGTGAAAGGTACGGTGTGTCGTGTACCGCCTTGAAATCTTAGCTGGTTCGC 180 consensus_5948#1 ------------------------------------------------------------ consensus_5948#0 CGGTGATCATGCCGTGAAGCCGCCGCCGCAGGCATCTTCCCGGCGAGCGAGTTGGTAGGG 240 consensus_5948#1 ------------------------------------------------------------ consensus_5948#0 GCGCTTCCACTCGCGTAGCTACGAATCTTGGCCTTCCCGGCGGCGATTGGATGGTGCCCC 300 consensus_5948#1 ------------------------------------------------------------ consensus_5948#0 TGACCCTGAGGTGAATTCCAAGAAGATCCAAGAACCATCCCCTCCCCGGATGGATGACGC 360 consensus_5948#1 ------------------------------------------------------------ consensus_5948#0 GGAGGCGAACATCCTCGCGTCCCTCGGCCGCGTGCGCCTCTGCGACCTCGCCGCCGCCGA 420 consensus_5948#1 ------------------------------------------------------------ consensus_5948#0 CGGCCTCCCGTCCGACGGCTACAAGATGTGCGTGTCGGCCCTGATGCAGTCGCTGGCGCA 480 consensus_5948#1 ------------------------------------------------------------ consensus_5948#0 GTACTCGGCGGCCGTCGTCGAGCTGCCTCCGGCCGACGGCGCCCTGCTGAGGTCGGGGCT 540 consensus_5948#1 ------------------------------------------------------------ consensus_5948#0 GGACTCCGCACGCCTCTTCTTCCACCAGCGAGGGTACGGATCCGGCGAGGCCGGCGGCGG 600 consensus_5948#1 -------------------------------GGGTACGGTTCCGGCGAGGCCGGCGGCGG 29 ******** ******************** consensus_5948#0 CGGCGGTGGCGGCGGCTCGGGTGATGCCCGGGAGTGGTGCAAGACGTCTGGCTACTATGC 660 consensus_5948#1 CGGCGGTGGCGGCGGCTCGGGTNATGCCCGGAAGTGGTGCAAGACGTCTGGCTACTATGC 89 ********************** ******** **************************** consensus_5948#0 TGATCCTCAGATGTGGCTGGAAATGTATGATTTCAGGCCCGGCATCACGCCGGTAGAGCC 720 consensus_5948#1 TGATCCTNANATGTGGCTGGAAATNTATGATTTCAGGCCCNGCATCACGCCGGTAGAGCC 149 ******* * ************** *************** ******************* consensus_5948#0 GAACGGTGT-GGCGGAATTGCCGCCGTCCGGGTTGCCTGATATGTTTTCGGTGCTTGGGA 779 consensus_5948#1 GAACGGTGTTGGCGGAATTGCCGCCTTCCGGTTTTCCTGANANNTTTTCGGTNCTTT--- 206 ********* *************** ***** ** ***** * ******** *** consensus_5948#0 AGGTTTCCCGGGAGGTCTTGGACGCGATTAGCTTCTCGCTGAATCTGCGTAGCTCCACAT 839 consensus_5948#1 ------------------------------------------------------------ consensus_5948#0 TTACGGGTTGCTTGACAACATACCCTTGAGAAGCCAGGAGGTATCATCTTCTGTTCTTTC 899 consensus_5948#1 ------------------------------------------------------------ consensus_5948#0 GGCATGTTGTCATTCGAGGCCGTCGATGGAAGGAGCACAGCAGCATAGCGTCGCTTCTCA 959 consensus_5948#1 ------------------------------------------------------------ consensus_5948#0 GGATGATGAACAATTGCTCATGTTTTCGGATCAGGAGAACCAGATTGACAAGACTTTGCT 1019 consensus_5948#1 ------------------------------------------------------------ consensus_5948#0 TACGCTGGTTAAGTCGGATAGGTCGGGCCTGTATATCAAAGATTTGCAAGGGCGCTGGAT 1079 consensus_5948#1 ------------------------------------------------------------ consensus_5948#0 TCTTGTCGATGGGGATCTTGGTCCGCTTGATATTGTTGTCTATCCTGGCCTTGCGCTTTA 1139 consensus_5948#1 ------------------------------------------------------------ consensus_5948#0 TCGGGAAACAGCTGGCTATGTAAACCCAGCTGTGCACAAGACGGAGGTCGGCAACTTGCA 1199 consensus_5948#1 ------------------------------------------------------------ consensus_5948#0 GGAATGTATGTTTGGGCGGTGTTCGTTGGTGTTCAAGCTCATGCCTAGGTCAGTTGCAAG 1259 consensus_5948#1 ------------------------------------------------------------ consensus_5948#0 GCTGAGTGGTGAA 1272 consensus_5948#1 ------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||