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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5958#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1995 fasta sequence
[GGAGCGAGCGTGCAAGGAAGAAGAAGAAGAGGCATCGGCATCGCGTCGGGAAGGCCCCCCATGGATATGGATCCTCCCACCAATAACCCTAGCCCCCCTGGTCCCCCCGACTCCCCGCCGCCGGAGAAGGGGCTCGCCTCCCTCTCCCTCCGCACCTCTCACCTCCCTCCCGACTTCGAGATCCACGACGACTACGACGACGACGACGACGAGGGCTACCTCACTGCCGTCTCCAGGGTAGGGAGCATCAGCACCTCCGCCTCCGCCTGGAAGGACGACCTCGAAGACGCCGACGTGGCTCCACCCAGCCCCAGCAGCAGCGGCTACGCCGCCGAGAGGGGCACCAGCCTCGCCTCCAGCGCCGCCGCCAACGACGATCCCCAACCCCAACCCGACGACGACGATTGGCCCCGCGACAAGAAGCATCTCCACGAGGACGATACTTCTGCTTCATGGCGCAAACGGAAAAAGCACTTCTTCATCTTGAGCAATTCTGGCAAGCCAATTTATTCTAGGTATGGAGATGAGCATAAGCTTGCTGGGTTTTCCGCCACGTTGCAAGCAATCATTTCTTTCGTTGAGAACAGTGGTGACCATATCAAATTTGTAAGGGCTGCCAAACATCAGATAGTTTTCCTTGTCAAGGGTCCAATATACTTAGTTTGTATAAGTTGCACTGAAGAGTCATATGAAGGATTGAGGGGACAACTAGAGCTCATGTATGGTCAGATGCTGCTGATTTTGACCAAGTCTGTCAACAGATGCTTTGAGAAGAACCCTAAATTTGATATGGCACCATTGCTAGGTGGCACAGATGCAGTTTTCCTATCACTTATACATGCATTCAGCTGGAATCCTGCTACATTTCTTCATGCGTACACATGCCTTCCCCTCGCCCAATCCACAAGGCAGGCGGCTAGTGCAGTTTTACAAGACATTGCTGATTCAGGAGTTTTGTTTGCACTGTTGATGTGTGAGCACAAGGTTATTAGTCTAGTGGGAGCACAAAAGGCAACTTTGCATCCTGATGATATTTTTCTACTTTCAAATTTCATATTGTCCTCTGAATCTTTTAGGACTTCGGAGTCTTTTTCACCCATATGCCTTCCAAGATACAATTCTATGGCTTTCTTATATGCTTATGTTCATTTTTTTGATGAAAATACATACTTGACACTTCTTACTGCAAGATCAGACGCCTTTTATGATCTGAAAGATTCCAGGTCCCGCATTCAGAATGTTCTCTTGAAGGCAAATGTCCTTGTGGAAGTCCAAAGGTCTCTGCGTGAGAGCGCACTGCGCATTGAAGATCTCCCTGCTGATCCATCTTCTCAATCTGTATCACCACCTCCACAGTTCTCTCAAGATCTGCACTTTCAGTTATTATCTTCTGAAATGGCAATTGGTGGACCAGCTGGACTTTGGCATTTTATATATAAAAGCATTTACCTTGATCAATATGTATCATCTGAGTTCCCCTTAATCATAAGCAATCCAAAGCAACAGAAAAGATTGTACAAAGCTTATCAAAAATTGTATGCTTCCATGCATGATAAAGCAACTGGTCCACATAAAACCCAATTCAGAAGAGATGAAGATTATGTTCTGTTCTGCTGGATAACCCAGGATTTTGAGTTGTACGCCGCTTTTAATCCACTGGCTGACAAGAGTCAAGCAATCAAGGTATGCAATAGAGTATGCCAATGGATCAGGGACCTGGAAAACGAAATTTTCGTATACGGAGAAAGCACCCTTTCCTGGTGATATATTGTCTTGCAGTACCATCACTGTTGGGGAGATATGAGGGATTAGGTTTGTATAACATTTTCACTAAAGTCA-TGATTTTATTTGCTACCCAGGGTATTTCATGTCAATTTTAATTGGTTCCTGTTTGTTGTCAATGCCATTTCGTTTCTTTCACTCTATGTATGTTCTTCGTGTAATCTAATCCGTTAGTACCTTTTAGAGTTAGTAATTTCCATCGGGATCCATACT]
[+] EMBL AK067175 [GGAGCGAGCGTGCAAGGAAGAAGAAGAAGAGGCATCGGCATCGCGTCGGGAAGGCCCCCCATGGATATGGATCCTCCCACCAATAACCCTAGCCCCCCTGGTCCCCCCGACTCCCCGCCGCCGGAGAAGGGGCTCGCCTCCCTCTCCCTCCGCACCTCTCACCTCCCTCCCGACTTCGAGATCCACGACGACTACGACGACGACGACGACGAGGGCTACCTCACTGCCGTCTCCAGGGTAGGGAGCATCAGCACCTCCGCCTCCGCCTGGAAGGACGACCTCGAAGACGCCGACGTGGCTCCACCCAGCCCCAGCAGCAGCGGCTACGCCGCCGAGAGGGGCACCAGCCTCGCCTCCAGCGCCGCCGCCAACGACGATCCCCAACCCCAACCCGACGACGACGATTGGCCCCGCGACAAGAAGCATCTCCACGAGGACGATACTTCTGCTTCATGGCGCAAACGGAAAAAGCACTTCTTCATCTTGAGCAATTCTGGCAAGCCAATTTATTCTAGGTATGGAGATGAGCATAAGCTTGCTGGGTTTTCCGCCACGTTGCAAGCAATCATTTCTTTCGTTGAGAACAGTGGTGACCATATCAAATTTGTAAGGGCTGCCAAACATCAGATAGTTTTCCTTGTCAAGGGTCCAATATACTTAGTTTGTATAAGTTGCACTGAAGAGTCATATGAAGGATTGAGGGGACAACTAGAGCTCATGTATGGTCAGATGCTGCTGATTTTGACCAAGTCTGTCAACAGATGCTTTGAGAAGAACCCTAAATTTGATATGGCACCATTGCTAGGTGGCACAGATGCAGTTTTCCTATCACTTATACATGCATTCAGCTGGAATCCTGCTACATTTCTTCATGCGTACACATGCCTTCCCCTCGCCCAATCCACAAGGCAGGCGGCTAGTGCAGTTTTACAAGACATTGCTGATTCAGGAGTTTTGTTTGCACTGTTGATGTGTGAGCACAAGGTTATTAGTCTAGTGGGAGCACAAAAGGCAACTTTGCATCCTGATGATATTTTTCTACTTTCAAATTTCATATTGTCCTCTGAATCTTTTAGGACTTCGGAGTCTTTTTCACCCATATGCCTTCCAAGATACAATTCTATGGCTTTCTTATATGCTTATGTTCATTTTTTTGATGAAAATACATACTTGACACTTCTTACTGCAAGATCAGACGCCTTTTATGATCTGAAAGATTCCAGGTCCCGCATTCAGAATGTTCTCTTGAAGGCAAATGTCCTTGTGGAAGTCCAAAGGTCTCTGCGTGAGAGCGCACTGCGCATTGAAGATCTCCCTGCTGATCCATCTTCTCAATCTGTATCACCACCTCCACAGTTCTCTCAAGATCTGCACTTTCAGTTATTATCTTCTGAAATGGCAATTGGTGGACCAGCTGGACTTTGGCATTTTATATATAAAAGCATTTACCTTGATCAATATGTATCATCTGAGTTCCCCTTAATCATAAGCAATCCAAAGCAACAGAAAAGATTGTACAAAGCTTATCAAAAATTGTATGCTTCCATGCATGATAAAGCAACTGGTCCACATAAAACCCAATTCAGAAGAGATGAAGATTATGTTCTGTTCTGCTGGATAACCCAGGATTTTGAGTTGTACGCCGCTTTTAATCCACTGGCTGACAAGAGTCAAGCAATCAAGGTATGCAATAGAGTATGCCAATGGATCAGGGACCTGGAAAACGAAATTTTCGTATACGGAGAAAGCACCCTTTCCTGGTGATATATTGTCTTGCAGTACCATCACTGTTGGGGAGATATGAGGGATTAGGTTTGTATAACATTTTCACTAAAGTCA TGATTTTATTTGCTACCCAGGGTATTTCATGTCAATTTTAATTGGTTCCTGTTTGTTGTCAATGCCATTTCGTTTCTTTCACTCTATGTATGTTCTTCGTGTAATCTAATCCGTTAGTACCTTTTAGAGTTAGTAATTTCCATCGGGATCCATACT]
[-] EMBL CB662123 [ CCTTCCAAGATACAATTCTATGGCTTTCTTATATGCTTATGTTCATTTTTTTGATGAAAATACATACTTGACACTTCTTACTGCAAGATCAGACGCCTTTTATGATCTGAAAGATTCCAGGTCCCGCATTCAGAATGTTCTCTTGAAGGCAAATGTCCTTGTGGAAGTCCAAAGGTCTCTGCGTGAGAGCGCACTGCGCATTGAAGATCTCCCTGCTGATCCATCTTCTCAATCTGTATCACCACCTCCACAGTTCTCTCAAGATCTGCACTTTCAGTTATTATCTTCTGAAATGGCAATTGGTGGACCAGCTGGACTTTGGCATTTTATATATAAAAGCATTTACCTTGATCAATATGTATCATCTGAGTTCCCCTTAATCATAAGCAATCCAAAGCAACAGAAAAGATTGTACAAAGCTTATCAAAAATTGTATGCTTCCATGCATGATAAAGCAACTGGTCCACATAAAACCCAATTCAGAAGAGATGAAGATTATGTTCTGTTCTGCTGGATAACCCAGGATTTTGAGTTGTACGCCGCTTTTAATCCACTGGCTGACAAGAGTCAAGCAATCAAGGTATGCAATAGAGTATGCCAATGGATCAGGGACCTGGAAAACGAAATTTTCGTATACGGAGAAAGCACCCTTTCCTGGTGATATATTGTCTTGCAGTACCATCACTGTTGGGGAGATATGAGGGATTAGGTTTGTATAACATTTTCACTAAAGTCAGTGATTTTATTTGCTACCCAG ]
consensusID : consensus_5958#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 792 fasta sequence
[ATTGTCAAGGGTCCAATATACTTAGTTTGTATAAGTTGCACTGAAGAGTCATATGAAGGATTGAGGGGACAACTAGAGCTCATGTATGGTCAGATGCTGCTGATTTTGACCATTGCTAGGTGGCACAGATGCAGTTTTCCTATCACTTATACATGCATTCAGCTGGAATCCTGCTACATTTCTTCATGCGTACACATGCCTTCCCCTCGCCCAATCCACAAGGCAGGCGGCTAGTGCAGTTTTACAAGACATTGCTGATTCAGGAGTTTTGTTTGCACTGTTGATGTGTGAGCACAAGGTTATTAGTCTAGTGGGAGCACAAAAGGCAACTTTGCATCCTGATGATATTTTTCTACTTTCAAATTTCATATTGTCCTCTGAATCTTTTAGGACTTCGGAGTCTTTTTCACCCATATGCCTTCCAAGATACAATTCTATGGCTTTCTTATATGCTTATGTTCATTTTTTTGATGAAAATACATACTTGACACTTCTTACTGCAAGATCAGACGCCTTTTATGATCTGAAAGATTCCAGGTCCCGCATTCAGAATGTTCTCTTGAAGGCAAATGTCCTTGTGGAAGTCCAAAGGTCTCTGCGTGAGAGCGCACTGCGCATTGAAGATCTCCCTGCTGATCCATCTTCTCAATCTGTATCACCACCTCCACAGTTCTCTCAAGATCTGCACTTTCAGTTATTATCTTCTGAAATGGCAATTGGTGGACCAGCTGGACTTTGGCATTTTATATATAAAAGCATTTACCTTGATCAATATGTATCATCTGAGATCCC]
[+] EMBL CB662122 [ATTGTCAAGGGTCCAATATACTTAGTTTGTATAAGTTGCACTGAAGAGTCATATGAAGGATTGAGGGGACAACTAGAGCTCATGTATGGTCAGATGCTGCTGATTTTGACCATTGCTAGGTGGCACAGATGCAGTTTTCCTATCACTTATACATGCATTCAGCTGGAATCCTGCTACATTTCTTCATGCGTACACATGCCTTCCCCTCGCCCAATCCACAAGGCAGGCGGCTAGTGCAGTTTTACAAGACATTGCTGATTCAGGAGTTTTGTTTGCACTGTTGATGTGTGAGCACAAGGTTATTAGTCTAGTGGGAGCACAAAAGGCAACTTTGCATCCTGATGATATTTTTCTACTTTCAAATTTCATATTGTCCTCTGAATCTTTTAGGACTTCGGAGTCTTTTTCACCCATATGCCTTCCAAGATACAATTCTATGGCTTTCTTATATGCTTATGTTCATTTTTTTGATGAAAATACATACTTGACACTTCTTACTGCAAGATCAGACGCCTTTTATGATCTGAAAGATTCCAGGTCCCGCATTCAGAATGTTCTCTTGAAGGCAAATGTCCTTGTGGAAGTCCAAAGGTCTCTGCGTGAGAGCGCACTGCGCATTGAAGATCTCCCTGCTGATCCATCTTCTCAATCTGTATCACCACCTCCACAGTTCTCTCAAGATCTGCACTTTCAGTTATTATCTTCTGAAATGGCAATTGGTGGACCAGCTGGACTTTGGCATTTTATATATAAAAGCATTTACCTTGATCAATATGTATCATCTGAGATCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5958#0 GGAGCGAGCGTGCAAGGAAGAAGAAGAAGAGGCATCGGCATCGCGTCGGGAAGGCCCCCC 60
consensus_5958#1 ------------------------------------------------------------
consensus_5958#0 ATGGATATGGATCCTCCCACCAATAACCCTAGCCCCCCTGGTCCCCCCGACTCCCCGCCG 120
consensus_5958#1 ------------------------------------------------------------
consensus_5958#0 CCGGAGAAGGGGCTCGCCTCCCTCTCCCTCCGCACCTCTCACCTCCCTCCCGACTTCGAG 180
consensus_5958#1 ------------------------------------------------------------
consensus_5958#0 ATCCACGACGACTACGACGACGACGACGACGAGGGCTACCTCACTGCCGTCTCCAGGGTA 240
consensus_5958#1 ------------------------------------------------------------
consensus_5958#0 GGGAGCATCAGCACCTCCGCCTCCGCCTGGAAGGACGACCTCGAAGACGCCGACGTGGCT 300
consensus_5958#1 ------------------------------------------------------------
consensus_5958#0 CCACCCAGCCCCAGCAGCAGCGGCTACGCCGCCGAGAGGGGCACCAGCCTCGCCTCCAGC 360
consensus_5958#1 ------------------------------------------------------------
consensus_5958#0 GCCGCCGCCAACGACGATCCCCAACCCCAACCCGACGACGACGATTGGCCCCGCGACAAG 420
consensus_5958#1 ------------------------------------------------------------
consensus_5958#0 AAGCATCTCCACGAGGACGATACTTCTGCTTCATGGCGCAAACGGAAAAAGCACTTCTTC 480
consensus_5958#1 ------------------------------------------------------------
consensus_5958#0 ATCTTGAGCAATTCTGGCAAGCCAATTTATTCTAGGTATGGAGATGAGCATAAGCTTGCT 540
consensus_5958#1 ------------------------------------------------------------
consensus_5958#0 GGGTTTTCCGCCACGTTGCAAGCAATCATTTCTTTCGTTGAGAACAGTGGTGACCATATC 600
consensus_5958#1 ------------------------------------------------------------
consensus_5958#0 AAATTTGTAAGGGCTGCCAAACATCAGATAGTTTTCCTTGTCAAGGGTCCAATATACTTA 660
consensus_5958#1 ------------------------------------ATTGTCAAGGGTCCAATATACTTA 24
***********************
consensus_5958#0 GTTTGTATAAGTTGCACTGAAGAGTCATATGAAGGATTGAGGGGACAACTAGAGCTCATG 720
consensus_5958#1 GTTTGTATAAGTTGCACTGAAGAGTCATATGAAGGATTGAGGGGACAACTAGAGCTCATG 84
************************************************************
consensus_5958#0 TATGGTCAGATGCTGCTGATTTTGACCAAGTCTGTCAACAGATGCTTTGAGAAGAACCCT 780
consensus_5958#1 TATGGTCAGATGCTGCTGATTTTGACCA-------------------------------- 112
****************************
consensus_5958#0 AAATTTGATATGGCACCATTGCTAGGTGGCACAGATGCAGTTTTCCTATCACTTATACAT 840
consensus_5958#1 ------------------TTGCTAGGTGGCACAGATGCAGTTTTCCTATCACTTATACAT 154
******************************************
consensus_5958#0 GCATTCAGCTGGAATCCTGCTACATTTCTTCATGCGTACACATGCCTTCCCCTCGCCCAA 900
consensus_5958#1 GCATTCAGCTGGAATCCTGCTACATTTCTTCATGCGTACACATGCCTTCCCCTCGCCCAA 214
************************************************************
consensus_5958#0 TCCACAAGGCAGGCGGCTAGTGCAGTTTTACAAGACATTGCTGATTCAGGAGTTTTGTTT 960
consensus_5958#1 TCCACAAGGCAGGCGGCTAGTGCAGTTTTACAAGACATTGCTGATTCAGGAGTTTTGTTT 274
************************************************************
consensus_5958#0 GCACTGTTGATGTGTGAGCACAAGGTTATTAGTCTAGTGGGAGCACAAAAGGCAACTTTG 1020
consensus_5958#1 GCACTGTTGATGTGTGAGCACAAGGTTATTAGTCTAGTGGGAGCACAAAAGGCAACTTTG 334
************************************************************
consensus_5958#0 CATCCTGATGATATTTTTCTACTTTCAAATTTCATATTGTCCTCTGAATCTTTTAGGACT 1080
consensus_5958#1 CATCCTGATGATATTTTTCTACTTTCAAATTTCATATTGTCCTCTGAATCTTTTAGGACT 394
************************************************************
consensus_5958#0 TCGGAGTCTTTTTCACCCATATGCCTTCCAAGATACAATTCTATGGCTTTCTTATATGCT 1140
consensus_5958#1 TCGGAGTCTTTTTCACCCATATGCCTTCCAAGATACAATTCTATGGCTTTCTTATATGCT 454
************************************************************
consensus_5958#0 TATGTTCATTTTTTTGATGAAAATACATACTTGACACTTCTTACTGCAAGATCAGACGCC 1200
consensus_5958#1 TATGTTCATTTTTTTGATGAAAATACATACTTGACACTTCTTACTGCAAGATCAGACGCC 514
************************************************************
consensus_5958#0 TTTTATGATCTGAAAGATTCCAGGTCCCGCATTCAGAATGTTCTCTTGAAGGCAAATGTC 1260
consensus_5958#1 TTTTATGATCTGAAAGATTCCAGGTCCCGCATTCAGAATGTTCTCTTGAAGGCAAATGTC 574
************************************************************
consensus_5958#0 CTTGTGGAAGTCCAAAGGTCTCTGCGTGAGAGCGCACTGCGCATTGAAGATCTCCCTGCT 1320
consensus_5958#1 CTTGTGGAAGTCCAAAGGTCTCTGCGTGAGAGCGCACTGCGCATTGAAGATCTCCCTGCT 634
************************************************************
consensus_5958#0 GATCCATCTTCTCAATCTGTATCACCACCTCCACAGTTCTCTCAAGATCTGCACTTTCAG 1380
consensus_5958#1 GATCCATCTTCTCAATCTGTATCACCACCTCCACAGTTCTCTCAAGATCTGCACTTTCAG 694
************************************************************
consensus_5958#0 TTATTATCTTCTGAAATGGCAATTGGTGGACCAGCTGGACTTTGGCATTTTATATATAAA 1440
consensus_5958#1 TTATTATCTTCTGAAATGGCAATTGGTGGACCAGCTGGACTTTGGCATTTTATATATAAA 754
************************************************************
consensus_5958#0 AGCATTTACCTTGATCAATATGTATCATCTGAGTTCCCCTTAATCATAAGCAATCCAAAG 1500
consensus_5958#1 AGCATTTACCTTGATCAATATGTATCATCTGAGATCCC---------------------- 792
********************************* ****
consensus_5958#0 CAACAGAAAAGATTGTACAAAGCTTATCAAAAATTGTATGCTTCCATGCATGATAAAGCA 1560
consensus_5958#1 ------------------------------------------------------------
consensus_5958#0 ACTGGTCCACATAAAACCCAATTCAGAAGAGATGAAGATTATGTTCTGTTCTGCTGGATA 1620
consensus_5958#1 ------------------------------------------------------------
consensus_5958#0 ACCCAGGATTTTGAGTTGTACGCCGCTTTTAATCCACTGGCTGACAAGAGTCAAGCAATC 1680
consensus_5958#1 ------------------------------------------------------------
consensus_5958#0 AAGGTATGCAATAGAGTATGCCAATGGATCAGGGACCTGGAAAACGAAATTTTCGTATAC 1740
consensus_5958#1 ------------------------------------------------------------
consensus_5958#0 GGAGAAAGCACCCTTTCCTGGTGATATATTGTCTTGCAGTACCATCACTGTTGGGGAGAT 1800
consensus_5958#1 ------------------------------------------------------------
consensus_5958#0 ATGAGGGATTAGGTTTGTATAACATTTTCACTAAAGTCATGATTTTATTTGCTACCCAGG 1860
consensus_5958#1 ------------------------------------------------------------
consensus_5958#0 GTATTTCATGTCAATTTTAATTGGTTCCTGTTTGTTGTCAATGCCATTTCGTTTCTTTCA 1920
consensus_5958#1 ------------------------------------------------------------
consensus_5958#0 CTCTATGTATGTTCTTCGTGTAATCTAATCCGTTAGTACCTTTTAGAGTTAGTAATTTCC 1980
consensus_5958#1 ------------------------------------------------------------
consensus_5958#0 ATCGGGATCCATACT 1995
consensus_5958#1 ---------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||