cluster # 5961

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Oryza sativa
cluster # 5961 cluster # 5961 Sequences # 3 consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5961#0 length = 922 sequences # 3

consensusID : consensus_5961#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 922
fasta sequence

                              [GCGTACGGAAGACAGCAGCATTATTTTGCATAACACGTTGCATGTTTAGACGGATCTTGGAAGTTGGCAATGATCCATTTGCATTTCTCAGCTTGTCTAACCAGGCTATGGTCTTTTCTCCAGCACTTTTTTGAAGAGGTTTCTGCTTCTCACCTGGCTTAGCGGTTTCAGCTACCCTGTTTGCACAAGCTCTGCCAAAAACAACTATGTCAAGAAGTGAATTTGCACCCAGACGATTTGCACCATGAACAGATGCACATGCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAACTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTCGTACTGGAAATCAGAATCAAACGAGCTTTTACCCTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATCTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATCGGCCCGAGGGACTCGGGCCTTAGAGCCAAAAGGAGGGGCCAGGCCCCGCTTCCGACTCACGGAATAAGTAAAATAACGTTAAAAGTAGTG-GTATTTCACTTGCGCCCGAGGGCTCCCACTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC-AGGGTCTTCTTTCCCC-GCTGATTCC-GCC-AGCCCGTACCCCTTGGC-TGT-GGTTTCGCTGGATAGTAGACAGGGACAGTGGGAAATCTTCGTTTAAATCCAATTTCATTGCCGGCGTCACTTAAATTTAAGAATTGGACGGAAGGGCCAATTTTNGGGGCCTTAANC]

[+] EMBL CB646850             [GCGTACGGAAGACAGCAGCATTATTTTGCATAACACGTTGCATGTTTAGACGGATCTTGGAAGTTGGCAATGATCCATTTGCATTTCTCAGCTTGTCTAACCAGGCTATGGTCTTTTCTCCAGCACTTTTTTGAAGAGGTTTCTGCTTCTCACCTGGCTTAGCGGTTTCAGCTACCCTGTTTGCACAAGCTCTGCCAAAAACAACTATGTCAAGAAGTGAATTTGCACCCAGACGATTTGCACCATGAACAGATGCACATGCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAACTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTCGTACTGGAAATCAGAATCAAACGAGCTTTTACCCTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATCTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATCGGCCCGAGGGACTCGGGCCTTAGAGCCAAAAGGAGGGGCCAGGCCCCGCTTCCGACTCACGGAATAAGTAAAATAACGTTAAAAGTAGTG GTATTTCACTTGCGCCCGAGGGCTCCCACTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC AGGGTCTTCTTTCCCC GCTGATTCC GCC AGCC                                                                                                                                       ]
[+] EMBL AU163253             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTNATCTTTTAACAGATGTNCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATCGGCCCGAGGGACTCGGGCNATAGAGCCAAAAGGAGGGGCCAGGCCCCGNTTCCGACTCACGGAATAAGTAAAATAACGTTAAAAGTAGTGNGTATTTCACTTGCGCNCGAGGGCTCCCANTTATCCTACACCTNTCAAGTNATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAAGGGTCTTCTTTCCCCGGCTGATTCCGGCA AGNCCGTACCCCTTGGCTTGTGGGTTTCGCTGGA                                                                                                         ]
[+] EMBL AU070422             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      cgnCCTTAGAGCCAAAAGGAGGGGCCAGG CCCGCTTCCGACTCACGGAATAAGTAAAATAACGTTAAAAGTAGTG GTATTTCACTTGCGCCCGAGGGCTCCCACTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC AGGGTCTTCTTTCCCC GCTGATTCC GCCAAGCCCGTTCCCNTTGGC TGT GGTTTCGCTGGATAGTAGACAGGGACAGTGGGAAATCTTCGTTTAAATCCAATTTCATTGCCGGCGTCACTTAAATTTAAGAATTGGACGGAAGGGCCAATTTTNGGGGCCTTAANC]




>consensus_5961#0
GCGTACGGAAGACAGCAGCATTATTTTGCATAACACGTTGCATGTTTAGACGGATCTTGG
AAGTTGGCAATGATCCATTTGCATTTCTCAGCTTGTCTAACCAGGCTATGGTCTTTTCTC
CAGCACTTTTTTGAAGAGGTTTCTGCTTCTCACCTGGCTTAGCGGTTTCAGCTACCCTGT
TTGCACAAGCTCTGCCAAAAACAACTATGTCAAGAAGTGAATTTGCACCCAGACGATTTG
CACCATGAACAGATGCACATGCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATC
AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTT
TTCTGACACCTCTAGCTTCAAACTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCAC
GGTTCGTATTCGTACTGGAAATCAGAATCAAACGAGCTTTTACCCTTTTGTTCCACACGA
GATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATCTTTTAACAGATGTGCC
GCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATCGGCCCGAGGGACTCGG
GCCTTAGAGCCAAAAGGAGGGGCCAGGCCCCGCTTCCGACTCACGGAATAAGTAAAATAA
CGTTAAAAGTAGTGGTATTTCACTTGCGCCCGAGGGCTCCCACTTATCCTACACCTCTCA
AGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATT
CCGCCAGCCCGTACCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAAA
TCTTCGTTTAAATCCAATTTCATTGCCGGCGTCACTTAAATTTAAGAATTGGACGGAAGG
GCCAATTTTNGGGGCCTTAANC

clustalw multiple alignements is not computed in this case