cluster # 5964

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5964 cluster # 5964 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5964#0 length = 1350 sequences # 2

consensus_5964#1 length = 346 sequences # 1

consensusID : consensus_5964#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1350
fasta sequence

                              [CTGCTCCACGGGTGGGGATGCCGACCGCGTCGAGCTCACCGTCGCCGAGAGCGGCGACGACTTCGAGGAGCTCGCCGGCGGCGGCCCGATGGATGTTGGGAGGCTGTACTCTCTGGTGCCGCGGCTCCCGCGCCCGGAGGAGGGGAGCTCCGAGCTCGCGGCGGTGCAGGTGACGGTTTTCCCCGGGAAGGGGCTCGCCGTCGGCGTGTCCATCCACCATGTGGCCTGCGACGATTCCAGCTTCATGCACTTCGTCAAGACCTGGGCGGCCAATTGCCGGGTGGCTTCCGGTGGGGACGTCGATGCTGTGCCGCCGCCGCCGCCGCCGTTCTTGGACCGTGGCGTGGTCGCCGATCCCGACGGCCTTGCAGCCAAGACGCTCGATCAAATGCGGCAGCTGGCGAACAGCGGGCCACCCCCGCCACCGCCGTCCGGGCCGCCGCCGAAGCTGTTCATGGCGTCGTTCACGCTCACCCGCGACAGCATCGACAAGCTCAAGCAGCGCGTCACGGCGAGCGGCGGCGGCGGCGTCCACTGCTCGGCCTTCACCGTGGCGTGCGCGTACGCGTGGACCTGCCTAGCGCGAGTCGACGCCACCTCCGCCGCCAGGGAGCGCGCGCACCTGCTGTTCTCGGTGGAATGCCGCCGCCGCCTGACCCCGCCGGTGCCGCAGGAGTACCTCGGCAACTGCCTCCGCCCTTGCTTCGTGGAGGTCGACACGGCCGGCCTGCTCGGCAGCGGCGCCGACGGCGTGGTGACGGCGGCGGTGGCCATCGGCGCGGCCATCAGGGGGCTCGACGACGGCGTGCTGGACGGCGCCGACGGGTGGTTCCAGAAGATCGTGTCGCTGATGCCGCACCGGCCGATGTCCATCGGCGGCTCGCCGCGGTACGGCGTGTACGACACCGACTTCGGGCTGGGCCGGCCGGCGAAGGTGGAGCTCCTGTCCATCGACAAGACGCCCGGCACGGTGTCCATGGCGGAGGCGCGCGACGGCCACGGCGGCATCGAGATTGGCGTGGCGCTGCCGGAGGCCGACATGGCGCGGTTCAGCTCATGCTTCGCCGACGGACTGAAGCAGCTGTGAGTGACGAACAGCTTGTTGCATTTCTTGCTTTCTTGCTGCTACGAATTGTTGCAGAGTTCAGAATTTGTTCAGTTTGGATGTGATTCTGTAATGCTAGCTGTTGGATTGCAATCGTTGATCGATCACATAAGCGATTGTGAATTTGCAATTGTCAATCTATGAAATAATCAGATAAGCTGTAATCTATTCTACATTTTTTTCAGAGATGGAGCAGGATAAGGCCTGCTTCGATCAACTTCTGTTATAAAAAAGACACTGAATAT]

[+] EMBL AK060511             [CTGCTCCACGGGTGGGGATGCCGACCGCGTCGAGCTCACCGTCGCCGAGAGCGGCGACGACTTCGAGGAGCTCGCCGGCGGCGGCCCGATGGATGTTGGGAGGCTGTACTCTCTGGTGCCGCGGCTCCCGCGCCCGGAGGAGGGGAGCTCCGAGCTCGCGGCGGTGCAGGTGACGGTTTTCCCCGGGAAGGGGCTCGCCGTCGGCGTGTCCATCCACCATGTGGCCTGCGACGATTCCAGCTTCATGCACTTCGTCAAGACCTGGGCGGCCAATTGCCGGGTGGCTTCCGGTGGGGACGTCGATGCTGTGCCGCCGCCGCCGCCGCCGTTCTTGGACCGTGGCGTGGTCGCCGATCCCGACGGCCTTGCAGCCAAGACGCTCGATCAAATGCGGCAGCTGGCGAACAGCGGGCCACCCCCGCCACCGCCGTCCGGGCCGCCGCCGAAGCTGTTCATGGCGTCGTTCACGCTCACCCGCGACAGCATCGACAAGCTCAAGCAGCGCGTCACGGCGAGCGGCGGCGGCGGCGTCCACTGCTCGGCCTTCACCGTGGCGTGCGCGTACGCGTGGACCTGCCTAGCGCGAGTCGACGCCACCTCCGCCGCCAGGGAGCGCGCGCACCTGCTGTTCTCGGTGGAATGCCGCCGCCGCCTGACCCCGCCGGTGCCGCAGGAGTACCTCGGCAACTGCCTCCGCCCTTGCTTCGTGGAGGTCGACACGGCCGGCCTGCTCGGCAGCGGCGCCGACGGCGTGGTGACGGCGGCGGTGGCCATCGGCGCGGCCATCAGGGGGCTCGACGACGGCGTGCTGGACGGCGCCGACGGGTGGTTCCAGAAGATCGTGTCGCTGATGCCGCACCGGCCGATGTCCATCGGCGGCTCGCCGCGGTACGGCGTGTACGACACCGACTTCGGGCTGGGCCGGCCGGCGAAGGTGGAGCTCCTGTCCATCGACAAGACGCCCGGCACGGTGTCCATGGCGGAGGCGCGCGACGGCCACGGCGGCATCGAGATTGGCGTGGCGCTGCCGGAGGCCGACATGGCGCGGTTCAGCTCATGCTTCGCCGACGGACTGAAGCAGCTGTGAGTGACGAACAGCTTGTTGCATTTCTTGCTTTCTTGCTGCTACGAATTGTTGCAGAGTTCAGAATTTGTTCAGTTTGGATGTGATTCTGTAATGCTAGCTGTTGGATTGCAATCGTTGATCGATCACATAAGCGATTGTGAATTTGCAATTGTCAATCTATGAAATAATCAGATAAGCTGTAATCTATTCTACATTTTTTTCAGAGATGGAGCAGGATAAGGCCTGCTTCGATCAACTTCTGTTATAAAAAAGACACTGAATAT]
[+] EMBL AK100771             [CTGCTCCACGGGTGGGGATGCCGACCGCGTCGAGCTCACCGTCGCCGAGAGCGGCGACGACTTCGAGGAGCTCGCCGGCGGCGGCCCGATGGATGTTGGGAGGCTGTACTCTCTGGTGCCGCGGCTCCCGCGCCCGGAGGAGGGGAGCTCCGAGCTCGCGGCGGTGCAGGTGACGGTTTTCCCCGGGAAGGGGCTCGCCGTCGGCGTGTCCATCCACCATGTGGCCTGCGACGATTCCAGCTTCATGCACTTCGTCAAGACCTGGGCGGCCAATTGCCGGGTGGCTTCCGGTGGGGACGTCGATGCTGTGCCGCCGCCGCCGCCGCCGTTCTTGGACCGTGGCGTGGTCGCCGATCCCGACGGCCTTGCAGCCAAGACGCTCGATCAAATGCGGCAGCTGGCGAACAGCGGGCCACCCCCGCCACCGCCGTCCGGGCCGCCGCCGAAGCTGTTCATGGCGTCGTTCACGCTCACCCGCGACAGCATCGACAAGCTCAAGCAGCGCGTCACGGCGAGCGGCGGCGGCGGCGTCCACTGCTCGGCCTTCACCGTGGCGTGCGCGTACGCGTGGACCTGCCTAGCGCGTGTCGACGCCACCTCCGCCGCCAGGGAGCGCGCGCACCTGCTGTTCTCGGTGGAATGCCGCCGCCGCCTGACCCCGCCGGTGCCGCAGGAGTACCTCGGCAACTGCCTCCGCCCTTGCTTCGTGGAGGTCGACACGGCCGGCCTGCTCGGCAGCGGCGCCGACGGCGTGGTGACGGCGGCGGTGGCCATCGGCGCGGCCATCAGGGGGCTCGACGACGGCGTGCTGGACGGCGCCGACGAGTGGTTCCAGAAGATCGTGTCGCTGATGCCGCACCGGCCGATGTCCATCGGCGGCTCGCCGCGGTACGGCGTGTACGACACCGACTTCGGGCTGGGCCGGCCGGCGAAGGTGGAGCTCCTGTCCATCGACAAGACGCCCGGCACGGTGTCCATGGCGGAGGCGCGCGACGGCCACGGCGGCATCGAGATTGGCGTGGCGCTGCCGGAGGCCGACATGGCGCGGTTCAGCTCATGCTTCGCCGACGGACTGAAGCAGCTGTGAGTGACGAACAGCTTGTTGCATTTCTTGCTTTCTTGCTGCTACGAATTGTTGCAGAGTTCAGAATTTGTTCAGTTTGGATGTGATTCTGTAATGCTAGCTGTTGGATTGCAATCGTTGATCGATCACATAAGCGATTGTGAATTTGCAATTGTCAATCTATGAAATAATCAGATAAGCTGTAATCTATTCTACATTTTTTTCAGAGATGGAGCAGGATAAGGCCTGCTTCGATCAACTTCTGTTATAAAAAAGACACTGA    ]




>consensus_5964#0
CTGCTCCACGGGTGGGGATGCCGACCGCGTCGAGCTCACCGTCGCCGAGAGCGGCGACGA
CTTCGAGGAGCTCGCCGGCGGCGGCCCGATGGATGTTGGGAGGCTGTACTCTCTGGTGCC
GCGGCTCCCGCGCCCGGAGGAGGGGAGCTCCGAGCTCGCGGCGGTGCAGGTGACGGTTTT
CCCCGGGAAGGGGCTCGCCGTCGGCGTGTCCATCCACCATGTGGCCTGCGACGATTCCAG
CTTCATGCACTTCGTCAAGACCTGGGCGGCCAATTGCCGGGTGGCTTCCGGTGGGGACGT
CGATGCTGTGCCGCCGCCGCCGCCGCCGTTCTTGGACCGTGGCGTGGTCGCCGATCCCGA
CGGCCTTGCAGCCAAGACGCTCGATCAAATGCGGCAGCTGGCGAACAGCGGGCCACCCCC
GCCACCGCCGTCCGGGCCGCCGCCGAAGCTGTTCATGGCGTCGTTCACGCTCACCCGCGA
CAGCATCGACAAGCTCAAGCAGCGCGTCACGGCGAGCGGCGGCGGCGGCGTCCACTGCTC
GGCCTTCACCGTGGCGTGCGCGTACGCGTGGACCTGCCTAGCGCGAGTCGACGCCACCTC
CGCCGCCAGGGAGCGCGCGCACCTGCTGTTCTCGGTGGAATGCCGCCGCCGCCTGACCCC
GCCGGTGCCGCAGGAGTACCTCGGCAACTGCCTCCGCCCTTGCTTCGTGGAGGTCGACAC
GGCCGGCCTGCTCGGCAGCGGCGCCGACGGCGTGGTGACGGCGGCGGTGGCCATCGGCGC
GGCCATCAGGGGGCTCGACGACGGCGTGCTGGACGGCGCCGACGGGTGGTTCCAGAAGAT
CGTGTCGCTGATGCCGCACCGGCCGATGTCCATCGGCGGCTCGCCGCGGTACGGCGTGTA
CGACACCGACTTCGGGCTGGGCCGGCCGGCGAAGGTGGAGCTCCTGTCCATCGACAAGAC
GCCCGGCACGGTGTCCATGGCGGAGGCGCGCGACGGCCACGGCGGCATCGAGATTGGCGT
GGCGCTGCCGGAGGCCGACATGGCGCGGTTCAGCTCATGCTTCGCCGACGGACTGAAGCA
GCTGTGAGTGACGAACAGCTTGTTGCATTTCTTGCTTTCTTGCTGCTACGAATTGTTGCA
GAGTTCAGAATTTGTTCAGTTTGGATGTGATTCTGTAATGCTAGCTGTTGGATTGCAATC
GTTGATCGATCACATAAGCGATTGTGAATTTGCAATTGTCAATCTATGAAATAATCAGAT
AAGCTGTAATCTATTCTACATTTTTTTCAGAGATGGAGCAGGATAAGGCCTGCTTCGATC
AACTTCTGTTATAAAAAAGACACTGAATAT

consensusID : consensus_5964#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 346
fasta sequence

                              [GGCGTCCACTGCTCGGCCTTCACCGTGGCGTGCGCGTACGGTGGACCTGCCTAGCGCGAGTCGACGCCACCTCCGCCGCCAGGGAGCGCGCGCACCTGCTGTTCTCGGCGGTGGCCATCGGCGCGGCCATCAGGGGGCTCGACGACGGCGTGCTGGACGGCGCCGACGGGTGGTTCCAGAAGATCGTGTCGCTGATGCCGCACCGGCCGATGTCCATCGGCGGCTCGNCGCGGTACGGCGTGTACGACAACGACTTCGGGCTGGGCCGGNCGGCGAAGGTGGAGCTCCTGTCCATTTGACAAGACGGCCGGCANGGTGTTCATNGGCGGAGGCGCGCGACGGGCCA]

[+] EMBL OSC826               [GGCGTCCACTGCTCGGCCTTCACCGTGGCGTGCGCGTACGGTGGACCTGCCTAGCGCGAGTCGACGCCACCTCCGCCGCCAGGGAGCGCGCGCACCTGCTGTTCTCGGCGGTGGCCATCGGCGCGGCCATCAGGGGGCTCGACGACGGCGTGCTGGACGGCGCCGACGGGTGGTTCCAGAAGATCGTGTCGCTGATGCCGCACCGGCCGATGTCCATCGGCGGCTCGNCGCGGTACGGCGTGTACGACAACGACTTCGGGCTGGGCCGGNCGGCGAAGGTGGAGCTCCTGTCCATTTGACAAGACGGCCGGCANGGTGTTCATNGGCGGAGGCGCGCGACGGGCCA]




>consensus_5964#1
GGCGTCCACTGCTCGGCCTTCACCGTGGCGTGCGCGTACGGTGGACCTGCCTAGCGCGAG
TCGACGCCACCTCCGCCGCCAGGGAGCGCGCGCACCTGCTGTTCTCGGCGGTGGCCATCG
GCGCGGCCATCAGGGGGCTCGACGACGGCGTGCTGGACGGCGCCGACGGGTGGTTCCAGA
AGATCGTGTCGCTGATGCCGCACCGGCCGATGTCCATCGGCGGCTCGNCGCGGTACGGCG
TGTACGACAACGACTTCGGGCTGGGCCGGNCGGCGAAGGTGGAGCTCCTGTCCATTTGAC
AAGACGGCCGGCANGGTGTTCATNGGCGGAGGCGCGCGACGGGCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5964#0      CTGCTCCACGGGTGGGGATGCCGACCGCGTCGAGCTCACCGTCGCCGAGAGCGGCGACGA 60
consensus_5964#1      ------------------------------------------------------------
                                                                                  

consensus_5964#0      CTTCGAGGAGCTCGCCGGCGGCGGCCCGATGGATGTTGGGAGGCTGTACTCTCTGGTGCC 120
consensus_5964#1      ------------------------------------------------------------
                                                                                  

consensus_5964#0      GCGGCTCCCGCGCCCGGAGGAGGGGAGCTCCGAGCTCGCGGCGGTGCAGGTGACGGTTTT 180
consensus_5964#1      ------------------------------------------------------------
                                                                                  

consensus_5964#0      CCCCGGGAAGGGGCTCGCCGTCGGCGTGTCCATCCACCATGTGGCCTGCGACGATTCCAG 240
consensus_5964#1      ------------------------------------------------------------
                                                                                  

consensus_5964#0      CTTCATGCACTTCGTCAAGACCTGGGCGGCCAATTGCCGGGTGGCTTCCGGTGGGGACGT 300
consensus_5964#1      ------------------------------------------------------------
                                                                                  

consensus_5964#0      CGATGCTGTGCCGCCGCCGCCGCCGCCGTTCTTGGACCGTGGCGTGGTCGCCGATCCCGA 360
consensus_5964#1      ------------------------------------------------------------
                                                                                  

consensus_5964#0      CGGCCTTGCAGCCAAGACGCTCGATCAAATGCGGCAGCTGGCGAACAGCGGGCCACCCCC 420
consensus_5964#1      ------------------------------------------------------------
                                                                                  

consensus_5964#0      GCCACCGCCGTCCGGGCCGCCGCCGAAGCTGTTCATGGCGTCGTTCACGCTCACCCGCGA 480
consensus_5964#1      ------------------------------------------------------------
                                                                                  

consensus_5964#0      CAGCATCGACAAGCTCAAGCAGCGCGTCACGGCGAGCGGCGGCGGCGGCGTCCACTGCTC 540
consensus_5964#1      ----------------------------------------------GGCGTCCACTGCTC 14
                                                                    **************

consensus_5964#0      GGCCTTCACCGTGGCGTGCGCGTACGCGTGGACCTGCCTAGCGCGAGTCGACGCCACCTC 600
consensus_5964#1      GGCCTTCACCGTGGCGTGCGCGTACG-GTGGACCTGCCTAGCGCGAGTCGACGCCACCTC 73
                      ************************** *********************************

consensus_5964#0      CGCCGCCAGGGAGCGCGCGCACCTGCTGTTCTCGGTGGAATGCCGCCGCCGCCTGACCCC 660
consensus_5964#1      CGCCGCCAGGGAGCGCGCGCACCTGCTGTTCTCGG------------------------- 108
                      ***********************************                         

consensus_5964#0      GCCGGTGCCGCAGGAGTACCTCGGCAACTGCCTCCGCCCTTGCTTCGTGGAGGTCGACAC 720
consensus_5964#1      ------------------------------------------------------------
                                                                                  

consensus_5964#0      GGCCGGCCTGCTCGGCAGCGGCGCCGACGGCGTGGTGACGGCGGCGGTGGCCATCGGCGC 780
consensus_5964#1      --------------------------------------------CGGTGGCCATCGGCGC 124
                                                                  ****************

consensus_5964#0      GGCCATCAGGGGGCTCGACGACGGCGTGCTGGACGGCGCCGACGGGTGGTTCCAGAAGAT 840
consensus_5964#1      GGCCATCAGGGGGCTCGACGACGGCGTGCTGGACGGCGCCGACGGGTGGTTCCAGAAGAT 184
                      ************************************************************

consensus_5964#0      CGTGTCGCTGATGCCGCACCGGCCGATGTCCATCGGCGGCTCGCCGCGGTACGGCGTGTA 900
consensus_5964#1      CGTGTCGCTGATGCCGCACCGGCCGATGTCCATCGGCGGCTCGNCGCGGTACGGCGTGTA 244
                      ******************************************* ****************

consensus_5964#0      CGACACCGACTTCGGGCTGGGCCGGCCGGCGAAGGTGGAGCTCCTGTCCATC-GACAAGA 959
consensus_5964#1      CGACAACGACTTCGGGCTGGGCCGGNCGGCGAAGGTGGAGCTCCTGTCCATTTGACAAGA 304
                      ***** ******************* *************************  *******

consensus_5964#0      CGCCCGGCACGGTGTCCATGG-CGGAGGCGCGCGACGG-CCACGGCGGCATCGAGATTGG 1017
consensus_5964#1      CGGCCGGCANGGTGTTCATNGGCGGAGGCGCGCGACGGGCCA------------------ 346
                      ** ****** ***** *** * **************** ***                  

consensus_5964#0      CGTGGCGCTGCCGGAGGCCGACATGGCGCGGTTCAGCTCATGCTTCGCCGACGGACTGAA 1077
consensus_5964#1      ------------------------------------------------------------
                                                                                  

consensus_5964#0      GCAGCTGTGAGTGACGAACAGCTTGTTGCATTTCTTGCTTTCTTGCTGCTACGAATTGTT 1137
consensus_5964#1      ------------------------------------------------------------
                                                                                  

consensus_5964#0      GCAGAGTTCAGAATTTGTTCAGTTTGGATGTGATTCTGTAATGCTAGCTGTTGGATTGCA 1197
consensus_5964#1      ------------------------------------------------------------
                                                                                  

consensus_5964#0      ATCGTTGATCGATCACATAAGCGATTGTGAATTTGCAATTGTCAATCTATGAAATAATCA 1257
consensus_5964#1      ------------------------------------------------------------
                                                                                  

consensus_5964#0      GATAAGCTGTAATCTATTCTACATTTTTTTCAGAGATGGAGCAGGATAAGGCCTGCTTCG 1317
consensus_5964#1      ------------------------------------------------------------
                                                                                  

consensus_5964#0      ATCAACTTCTGTTATAAAAAAGACACTGAATAT 1350
consensus_5964#1      ---------------------------------