cluster # 5966

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Oryza sativa
cluster # 5966 cluster # 5966 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5966#0 length = 731 sequences # 1

consensus_5966#1 length = 485 sequences # 1
consensus_5966#2 length = 174 sequences # 1

consensusID : consensus_5966#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 731
fasta sequence

                              [CATGGATCCATCATCCATGCACCAATCTATTAAAAACCCAAAACATCTTATAATGTGAAACGGAGGAAGTAGGACACTACCGATCTTGCTGATGCTTTGTTTCATACACCATGTATGCTTGAAAATTCATGCTTGATCCTAAGGATTTCAGCAGAAACTTGTCCCATTTCCCATCGGTCCTTAGGAGATGCCATGGAGCAGCAGAGACCTATTCTAACCAACGGAATGATGCAATTCTGCATCACTGTTGTTACCTTGATTTCGCCTTGTAGCATCGTGGGATCAACAATCTCATTTGTATTCATGGGAAAATCTCTTGCAACATATTCACGAAGGCTTGTACCATTATTGAAATTTTCATCAGTAGGACTACTCCCTGTTATCATTTCTAATAGAAGCACACCAAAGCTGTAGACATCACCCTTGGTTGATATCACTTCACTCATGCCATACTCAGGTGGGATGTATCCTATAGATCCTCTTAGGCAAGCCAAAGTTTTTGAACTTCCTTCATATGCATTTGATGCATTGTTTAGACATCTTGCTAGGCCAAAGTCACTGACATAAGCAATCATGTCAAGGTCCAAAAGTATATTACTTGGCTTCAAGTCACAATGTACTAACGGAGATGCACATTGGTTATGGAGATAGTCCAAACAAAATGCGACATCCAAAGCTATATTGATTCTTTGATTAAAAGTCAGAGTTTTCCTCTCACTATGTTCATGGGC]

[+] EMBL CB629651             [CATGGATCCATCATCCATGCACCAATCTATTAAAAACCCAAAACATCTTATAATGTGAAACGGAGGAAGTAGGACACTACCGATCTTGCTGATGCTTTGTTTCATACACCATGTATGCTTGAAAATTCATGCTTGATCCTAAGGATTTCAGCAGAAACTTGTCCCATTTCCCATCGGTCCTTAGGAGATGCCATGGAGCAGCAGAGACCTATTCTAACCAACGGAATGATGCAATTCTGCATCACTGTTGTTACCTTGATTTCGCCTTGTAGCATCGTGGGATCAACAATCTCATTTGTATTCATGGGAAAATCTCTTGCAACATATTCACGAAGGCTTGTACCATTATTGAAATTTTCATCAGTAGGACTACTCCCTGTTATCATTTCTAATAGAAGCACACCAAAGCTGTAGACATCACCCTTGGTTGATATCACTTCACTCATGCCATACTCAGGTGGGATGTATCCTATAGATCCTCTTAGGCAAGCCAAAGTTTTTGAACTTCCTTCATATGCATTTGATGCATTGTTTAGACATCTTGCTAGGCCAAAGTCACTGACATAAGCAATCATGTCAAGGTCCAAAAGTATATTACTTGGCTTCAAGTCACAATGTACTAACGGAGATGCACATTGGTTATGGAGATAGTCCAAACAAAATGCGACATCCAAAGCTATATTGATTCTTTGATTAAAAGTCAGAGTTTTCCTCTCACTATGTTCATGGGC]




>consensus_5966#0
CATGGATCCATCATCCATGCACCAATCTATTAAAAACCCAAAACATCTTATAATGTGAAA
CGGAGGAAGTAGGACACTACCGATCTTGCTGATGCTTTGTTTCATACACCATGTATGCTT
GAAAATTCATGCTTGATCCTAAGGATTTCAGCAGAAACTTGTCCCATTTCCCATCGGTCC
TTAGGAGATGCCATGGAGCAGCAGAGACCTATTCTAACCAACGGAATGATGCAATTCTGC
ATCACTGTTGTTACCTTGATTTCGCCTTGTAGCATCGTGGGATCAACAATCTCATTTGTA
TTCATGGGAAAATCTCTTGCAACATATTCACGAAGGCTTGTACCATTATTGAAATTTTCA
TCAGTAGGACTACTCCCTGTTATCATTTCTAATAGAAGCACACCAAAGCTGTAGACATCA
CCCTTGGTTGATATCACTTCACTCATGCCATACTCAGGTGGGATGTATCCTATAGATCCT
CTTAGGCAAGCCAAAGTTTTTGAACTTCCTTCATATGCATTTGATGCATTGTTTAGACAT
CTTGCTAGGCCAAAGTCACTGACATAAGCAATCATGTCAAGGTCCAAAAGTATATTACTT
GGCTTCAAGTCACAATGTACTAACGGAGATGCACATTGGTTATGGAGATAGTCCAAACAA
AATGCGACATCCAAAGCTATATTGATTCTTTGATTAAAAGTCAGAGTTTTCCTCTCACTA
TGTTCATGGGC

consensusID : consensus_5966#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 485
fasta sequence

                              [TTTTCTTCTCTCNCNTCTCCNTCCCGGGGGGTCTTNTNTCCTTTAAATACTTCCTCTGGTTCCCCATTATAAGATGTTGGGGGGCGATACCATTCATCGTATAGATTCCACTAACGTTCATATGAATTTTGGCACATATACGAAGCACAAGCATGGATCCATCATCCAGGGCACGAATCTATTAAAAACCCAAAACATCTTATAATGTGCAACACGGGAGGAAGTAGGANACTACCGCATCTTGCTGATGCTATNGTTTCATACACCATGGTATGCTTGAAACATTCATGCTATGATCCTAAGGATTTCAGCAGAAACTTGTCCCATTTCCCATCGGTCCTTAGGAGATGCCATGGGAGCAGCAGAGACCTATTCTAACCAACGGAATGATGCAATTCTGCCATCCACTGTGTTACCTTGATTTCGCCTTGTAGCATCGGGGGCATCCAACCAATCTCATTGGGATTCNGGGGGGAAAATCTCTT]

[-] EMBL BM419276             [TTTTCTTCTCTCNCNTCTCCNTCCCGGGGGGTCTTNTNTCCTTTAAATACTTCCTCTGGTTCCCCATTATAAGATGTTGGGGGGCGATACCATTCATCGTATAGATTCCACTAACGTTCATATGAATTTTGGCACATATACGAAGCACAAGCATGGATCCATCATCCAGGGCACGAATCTATTAAAAACCCAAAACATCTTATAATGTGCAACACGGGAGGAAGTAGGANACTACCGCATCTTGCTGATGCTATNGTTTCATACACCATGGTATGCTTGAAACATTCATGCTATGATCCTAAGGATTTCAGCAGAAACTTGTCCCATTTCCCATCGGTCCTTAGGAGATGCCATGGGAGCAGCAGAGACCTATTCTAACCAACGGAATGATGCAATTCTGCCATCCACTGTGTTACCTTGATTTCGCCTTGTAGCATCGGGGGCATCCAACCAATCTCATTGGGATTCNGGGGGGAAAATCTCTT]




>consensus_5966#1
TTTTCTTCTCTCNCNTCTCCNTCCCGGGGGGTCTTNTNTCCTTTAAATACTTCCTCTGGT
TCCCCATTATAAGATGTTGGGGGGCGATACCATTCATCGTATAGATTCCACTAACGTTCA
TATGAATTTTGGCACATATACGAAGCACAAGCATGGATCCATCATCCAGGGCACGAATCT
ATTAAAAACCCAAAACATCTTATAATGTGCAACACGGGAGGAAGTAGGANACTACCGCAT
CTTGCTGATGCTATNGTTTCATACACCATGGTATGCTTGAAACATTCATGCTATGATCCT
AAGGATTTCAGCAGAAACTTGTCCCATTTCCCATCGGTCCTTAGGAGATGCCATGGGAGC
AGCAGAGACCTATTCTAACCAACGGAATGATGCAATTCTGCCATCCACTGTGTTACCTTG
ATTTCGCCTTGTAGCATCGGGGGCATCCAACCAATCTCATTGGGATTCNGGGGGGAAAAT
CTCTT

consensusID : consensus_5966#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 174
fasta sequence

                              [CCGACTAGTTTTAGACGCGAGCAGGCCCCCTTTTTTTTTGTTTTTTTCTTGGGATGCAAACAATCTCATGTTGTATTCATGGGAAAATCTCTTGCAACATATTCACGAAGGCTTGTACCNTTATTGAAATTTTCATCNGTAGGACTACTCCCTGTTATCTCCCCAAAAAAAAAA]

[+] EMBL BM421609             [CCGACTAGTTTTAGACGCGAGCAGGCCCCCTTTTTTTTTGTTTTTTTCTTGGGATGCAAACAATCTCATGTTGTATTCATGGGAAAATCTCTTGCAACATATTCACGAAGGCTTGTACCNTTATTGAAATTTTCATCNGTAGGACTACTCCCTGTTATCTCCCCAAAAAAAAAA]




>consensus_5966#2
CCGACTAGTTTTAGACGCGAGCAGGCCCCCTTTTTTTTTGTTTTTTTCTTGGGATGCAAA
CAATCTCATGTTGTATTCATGGGAAAATCTCTTGCAACATATTCACGAAGGCTTGTACCN
TTATTGAAATTTTCATCNGTAGGACTACTCCCTGTTATCTCCCCAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5966#0      ------------------------------------------------------------
consensus_5966#1      TTTTCTTCTCTCNCNTCTCCNTCCCGGGGGGTCTTNTNTCCTTTAAATACTTCCTCTGGT 60
consensus_5966#2      ------------------------------------------------------------
                                                                                  

consensus_5966#0      ------------------------------------------------------------
consensus_5966#1      TCCCCATTATAAGATGTTGGGGGGCGATACCATTCATCGTATAGATTCCACTAACGTTCA 120
consensus_5966#2      ------------------------------------------------------------
                                                                                  

consensus_5966#0      -------------------------------CATGGATCCATCATCCATG-CACCAATCT 28
consensus_5966#1      TATGAATTTTGGCACATATACGAAGCACAAGCATGGATCCATCATCCAGGGCACGAATCT 180
consensus_5966#2      -------------------------------------------------CCGACTAGTTT 11
                                                                          ** * * *

consensus_5966#0      ATTAAAAACCCAAAACATCTTATAATGTGAAAC---GGAGGAAGTAGGACACTACCG-AT 84
consensus_5966#1      ATTAAAAACCCAAAACATCTTATAATGTGCAACACGGGAGGAAGTAGGANACTACCGCAT 240
consensus_5966#2      TAGACGCGAGCAGGCCCCCTTTTTTTTTGTTTTTTTCTTGGGATGCAAACAATCTCATGT 71
                         *      **   *  *** *  * **          ** *     * * *  *   *

consensus_5966#0      CTTGCTGATGCT-TTGTTTCATACACCATG-TATGCTTGAAA-ATTCATGCT-TGATCCT 140
consensus_5966#1      CTTGCTGATGCTATNGTTTCATACACCATGGTATGCTTGAAACATTCATGCTATGATCCT 300
consensus_5966#2      TGTATTCATGGGAAAATCTCTTGCAACATA---TTCACGAAG-GCTTGTACCNTTAT--T 125
                        *  * ***      * ** * ** ***    * *  ***    *  * *  * **  *

consensus_5966#0      AAGGATTTCAGCAGAAACTTGTCCCATTTCCCATCGGTCCTTAGGAGATGCCATGG-AGC 199
consensus_5966#1      AAGGATTTCAGCAGAAACTTGTCCCATTTCCCATCGGTCCTTAGGAGATGCCATGGGAGC 360
consensus_5966#2      GAAATTTTCATCNGTA----GGACTACTCCCTGTTATCTCCCCAAAAAAAAAA------- 174
                       *   ***** * * *    *  * * * **  *     *     * *    *       

consensus_5966#0      AGCAGAGACCTATTCTAACCAACGGAATGATGCAATTCTGC-ATCACTGTTGTTACCTTG 258
consensus_5966#1      AGCAGAGACCTATTCTAACCAACGGAATGATGCAATTCTGCCATCCACTGTGTTACCTTG 420
consensus_5966#2      ------------------------------------------------------------
                                                                                  

consensus_5966#0      ATTTCGCCTTGTAGCATCGTGGG-ATCAA--CAATCTCATTTGTATTCATGGG--AAAAT 313
consensus_5966#1      ATTTCGCCTTGTAGCATCGGGGGCATCCAACCAATCTCATTGGGATTCNGGGGGGAAAAT 480
consensus_5966#2      ------------------------------------------------------------
                                                                                  

consensus_5966#0      CTCTTGCAACATATTCACGAAGGCTTGTACCATTATTGAAATTTTCATCAGTAGGACTAC 373
consensus_5966#1      CTCTT------------------------------------------------------- 485
consensus_5966#2      ------------------------------------------------------------
                                                                                  

consensus_5966#0      TCCCTGTTATCATTTCTAATAGAAGCACACCAAAGCTGTAGACATCACCCTTGGTTGATA 433
consensus_5966#1      ------------------------------------------------------------
consensus_5966#2      ------------------------------------------------------------
                                                                                  

consensus_5966#0      TCACTTCACTCATGCCATACTCAGGTGGGATGTATCCTATAGATCCTCTTAGGCAAGCCA 493
consensus_5966#1      ------------------------------------------------------------
consensus_5966#2      ------------------------------------------------------------
                                                                                  

consensus_5966#0      AAGTTTTTGAACTTCCTTCATATGCATTTGATGCATTGTTTAGACATCTTGCTAGGCCAA 553
consensus_5966#1      ------------------------------------------------------------
consensus_5966#2      ------------------------------------------------------------
                                                                                  

consensus_5966#0      AGTCACTGACATAAGCAATCATGTCAAGGTCCAAAAGTATATTACTTGGCTTCAAGTCAC 613
consensus_5966#1      ------------------------------------------------------------
consensus_5966#2      ------------------------------------------------------------
                                                                                  

consensus_5966#0      AATGTACTAACGGAGATGCACATTGGTTATGGAGATAGTCCAAACAAAATGCGACATCCA 673
consensus_5966#1      ------------------------------------------------------------
consensus_5966#2      ------------------------------------------------------------
                                                                                  

consensus_5966#0      AAGCTATATTGATTCTTTGATTAAAAGTCAGAGTTTTCCTCTCACTATGTTCATGGGC 731
consensus_5966#1      ----------------------------------------------------------
consensus_5966#2      ----------------------------------------------------------