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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5968#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 646 fasta sequence
[ATAACCTAGGAGTTAATCACCTAGTAATGGTTAAGCAAAATATATGTGTGAGGTAGTTAAAATGCACTCTAGCTATGAATAAACCAACATAAAACTTGTTAGACCAGAGAGGTCATAGTTCCATCCCCATCCACCAAATCATAAGGCACTTAGCTCATATAATAATTTTTAGGTTGATATAATAAATTGCTAGCATAGACTAGAGCTCCCCTAGTTTATAAAATATGAACCATGATAATAAAGACCATAAGCTTATGAACTAAGGTTAAATTAGTTAACTAAAATACTCATTTTATACATCACTAGCTATATGAGGCAAGTTCTGGACCTAAACATCTAAAGCCATGAACCTATAAAACACTATACACCTATAACACGTTATAACTTGTAAAATATATAAAGAATTCATATTAACTCCAAAAAATTGTCAAACCAAATGTGTTAGTCTTAGAAAACACATATCCTCACCCCAGCAAGCATAAACTTGATAAGAATCACCTTACAACAGCATTTCACAATAGTACCTATGTAAATCCTACACTATACCGACGAAACTTCTAAAATTCATAACTCTCAAATGAAATGAGATAAAATAGAAATTCTTTCACATAAATTCATATTAGACTAGTACCTATACACTGTGCAC]
[+] EMBL CF304268 [ATAACCTAGGAGTTAATCACCTAGTAATGGTTAAGCAAAATATATGTGTGAGGTAGTTAAAATGCACTCTAGCTATGAATAAACCAACATAAAACTTGTTAGACCAGAGAGGTCATAGTTCCATCCCCATCCACCAAATCATAAGGCACTTAGCTCATATAATAATTTTTAGGTTGATATAATAAATTGCTAGCATAGACTAGAGCTCCCCTAGTTTATAAAATATGAACCATGATAATAAAGACCATAAGCTTATGAACTAAGGTTAAATTAGTTAACTAAAATACTCATTTTATACATCACTAGCTATATGAGGCAAGTTCTGGACCTAAACATCTAAAGCCATGAACCTATAAAACACTATACACCTATAACACGTTATAACTTGTAAAATATATAAAGAATTCATATTAACTCCAAAAAATTGTCAAACCAAATGTGTTAGTCTTAGAAAACACATATCCTCACCCCAGCAAGCATAAACTTGATAAGAATCACCTTACAACAGCATTTCACAATAGTACCTATGTAAATCCTACACTATACCGACGAAACTTCTAAAATTCATAACTCTCAAATGAAATGAGATAAAATAGAAATTCTTTCACATAAATTCATATTAGACTAGTACCTATACACTGTGCAC]
[+] EMBL CF304978 [ATAACCTAGGAGTTAATCACCTAGTAATGGTTAAGCAAAATATATGTGTGAGGTAGTTAAAATGCACTCTAGCTATGAATAAACCAACATAAAACTTGTTAGACCAGAGAGGTCATAGTTCCATCCCCATCCACCAAAACATAAGGCACTTAGCTCATATAATAATTTTTAGGTTGATATAATAAATTGCTAGCATAGACTAGAGCTCCCCTAGTTTATAAAATATGAACCATGATAATAAAGACCATAAGCTTATGAACTAAGGTTAAATTAGTTAACTAAAATACTCATTTTATACATCACTAGCTATATGAGGCAAGTTCTGGACCTAAACATCTAAAGCCATGAACCTATAAAACACTATACACCTATAACACGTTATAACTTGTAAAATATATAAAGAATTCATATTAACTCCAAAAAATTGTCAAACCAAATGTGTTAGTCTTAGAAAACACATATCCTCACCCCAGCAAGCATAAACTTGATAAGA ]
consensusID : consensus_5968#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence
[CGAGGCTTAAATTGTAACACATTTGTACTAAAATTCATACTTTACTTTAAATGAAGTGAACCAAATATCTATATAACCAGGAAACAGTGGGCTTCAACATATTAAAATAAAATATGGAACCTTCTGTACAAGTTATAGCTCTAAACTTTAAATTTATAGGATAGGTGCTAATGACATAGTATCGATTGAGCAATATGTATATATATAAATGTATATAAAAATACACTCTAGCTATAATGAAACCCAAATAAAACTTGTTACACCAGTGAATGCATAGTTCCATCCCCATCCACCAAAACTTAAGGCACTTAGCTCATATAATAATTTCTAGGTTGATATAATAAATTGCTAGCATGGACTAAAGCTCCCCTAGTTTATAAAATATGAACCATGATAATAAAGACCATAAGCCTATGAACTAAGGTTAGATTAGTTAACTAAAATACTGATTTTATAC]
[+] EMBL CF305872 [CGAGGCTTAAATTGTAACACATTTGTACTAAAATTCATACTTTACTTTAAATGAAGTGAACCAAATATCTATATAACCAGGAAACAGTGGGCTTCAACATATTAAAATAAAATATGGAACCTTCTGTACAAGTTATAGCTCTAAACTTTAAATTTATAGGATAGGTGCTAATGACATAGTATCGATTGAGCAATATGTATATATATAAATGTATATAAAAATACACTCTAGCTATAATGAAACCCAAATAAAACTTGTTACACCAGTGAATGCATAGTTCCATCCCCATCCACCAAAACTTAAGGCACTTAGCTCATATAATAATTTCTAGGTTGATATAATAAATTGCTAGCATGGACTAAAGCTCCCCTAGTTTATAAAATATGAACCATGATAATAAAGACCATAAGCCTATGAACTAAGGTTAGATTAGTTAACTAAAATACTGATTTTATAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5968#0 ------------------------------------------------------------
consensus_5968#1 CGAGGCTTAAATTGTAACACATTTGTACTAAAATTCATACTTTACTTTAAATGAAGTGAA 60
consensus_5968#0 ------------------------------------------------------------
consensus_5968#1 CCAAATATCTATATAACCAGGAAACAGTGGGCTTCAACATATTAAAATAAAATATGGAAC 120
consensus_5968#0 -----------------------------------ATAACCTAGGAGTTAATCACCTAGT 25
consensus_5968#1 CTTCTGTACAAGTTATAGCTCTAAACTTTAAATTTATAGGATAGGTGCTAATGACATAGT 180
*** **** * **** ** ****
consensus_5968#0 AATGGTTAAGCAAAATATATGTGTG---AGGTA-GTTAAAATGCACTCTAGCTATGAATA 81
consensus_5968#1 ATCGATTGAGCAATATGTATATATATAAATGTATATAAAAATACACTCTAGCTATAATGA 240
* * ** ***** ** *** * * * *** * ***** ************ * *
consensus_5968#0 AACCAACATAAAACTTGTTAGACCAGAGAGGTCATAGTTCCATCCCCATCCACCAAATCA 141
consensus_5968#1 AACCCAAATAAAACTTGTTACACCAGTGAATGCATAGTTCCATCCCCATCCACCAAAACT 300
**** * ************* ***** ** ************************* *
consensus_5968#0 TAAGGCACTTAGCTCATATAATAATTTTTAGGTTGATATAATAAATTGCTAGCATAGACT 201
consensus_5968#1 TAAGGCACTTAGCTCATATAATAATTTCTAGGTTGATATAATAAATTGCTAGCATGGACT 360
*************************** *************************** ****
consensus_5968#0 AGAGCTCCCCTAGTTTATAAAATATGAACCATGATAATAAAGACCATAAGCTTATGAACT 261
consensus_5968#1 AAAGCTCCCCTAGTTTATAAAATATGAACCATGATAATAAAGACCATAAGCCTATGAACT 420
* ************************************************* ********
consensus_5968#0 AAGGTTAAATTAGTTAACTAAAATACTCATTTTATACATCACTAGCTATATGAGGCAAGT 321
consensus_5968#1 AAGGTTAGATTAGTTAACTAAAATACTGATTTTATAC----------------------- 457
******* ******************* *********
consensus_5968#0 TCTGGACCTAAACATCTAAAGCCATGAACCTATAAAACACTATACACCTATAACACGTTA 381
consensus_5968#1 ------------------------------------------------------------
consensus_5968#0 TAACTTGTAAAATATATAAAGAATTCATATTAACTCCAAAAAATTGTCAAACCAAATGTG 441
consensus_5968#1 ------------------------------------------------------------
consensus_5968#0 TTAGTCTTAGAAAACACATATCCTCACCCCAGCAAGCATAAACTTGATAAGAATCACCTT 501
consensus_5968#1 ------------------------------------------------------------
consensus_5968#0 ACAACAGCATTTCACAATAGTACCTATGTAAATCCTACACTATACCGACGAAACTTCTAA 561
consensus_5968#1 ------------------------------------------------------------
consensus_5968#0 AATTCATAACTCTCAAATGAAATGAGATAAAATAGAAATTCTTTCACATAAATTCATATT 621
consensus_5968#1 ------------------------------------------------------------
consensus_5968#0 AGACTAGTACCTATACACTGTGCAC 646
consensus_5968#1 -------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||