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Oryza sativa
cluster # 5970 cluster # 5970       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5970#0 length = 1471 sequences # 3  

consensusID : consensus_5970#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1471
fasta sequence
                              [CCTGCATTTCCCCATCTCCTCCTCTGAGCAACTATATCGAGTTTCGACTACCATCTCAGCTTCGGTCTCGTATTCTCGTGGATCATCGGAAAGATGATCTCTACGGAAGAGGACTCTGATTCTTTTCAGGATGACAGCGAGGAACTGCAAATGCAGGTGACAAAGAAGACGTTGAAGCGTGTCATATCACTAGCCGAAACCTTCATCGCCATAGCAACCGGCATCCTCGCGGCAGCTTTCTCGGCAGGCAAAGATGTCCACCTGCACCGCCACGTCCTGGCCGCCGGCGGCTGCTTCCTCGTCGTGACATACCTGTCCGCTCTCCTGCTCATCTACATGAAGCTGTTCTTGTCAGATCACAGGCGGCTGCGCCGATGGCACGTCCGGTCCCTGCAGCTCCTGTGCGTGACCAGCGGCGCGTCGCTCGTCGCCACGAACTCCCTGCTCCTCGTCCTCATCGGCGAAGGCAATGGCTTGCTGTCGCTCAACCTGCTGCCCGTGCAGGGCATCGTCGGCGTGCTCGCGTACCACGCGACGCCGACGGAGGGGAGCGCGCGCGACGAGGCGTTCGAGGCGCAGGTCAAGAGCGCCCGCAAGGTCGCGCTGTTCGCGGCGGCCACGGCCTTCGCCGTGCAGACCACGCTCGTGTTTGGCGCGTTCAGCAACGCCGCCCTGCAGGCGATGGGCGGACGCCGGCTGGACCTCTCGGTGTCGTTCCTGGCGTCGGCGCTCAGCGTGTTCTTGGTCGTGGCGACGTGCATGCCGCTCGGGTTCAGGAACCAGGGCGCCAGGGACAAGGTGCTGTCCATCGTGAGGTACCTCAAGAAAGGCGTCATGGCCGTGCTCGCGGTCACCGCGGTGACTCTCGGCCAGGAGTTCCTCGGTGGCGCCGCGGCGCTCGCGCTCTTCCCGGAGATCACCGTCGCCGCCATGTACTACGCCGTGAGCATGCCCGCCGACGAGGCGGCCGCGGCCGCTGACCGCAAGATGGAGGTGCTTCCGACCGTCGTCGTGGCGACGTTCGGCTTCGGGATGCTCGGGGCGGCGTACGCGGCGCTGTTCGGCACGCCGGAGTACGACCTGTACACCAAGGCCCTGGCGTTCACCCTGCTCACCGCCGTCGTGTCCAGCCTGGGCCGCGTGGCGGGGCCGCTCTGCAACGCCCAGCGTGACAAGAGCTCGGCGGCGTGGGTGACATTCCTCAGCAGCATCCTCCCCATCGTGGAGATGCTGGTCGCCGTCCCGCTCGCCGCCAAGGTAATGGTTGATTTTCTCGCCGTTCCTGGTAATGGCTGATTTTCTCGCCGTGCACTCACTAGCACTTGATGTCTTGATCACTTGTACAAATTCTTCGAACACGATACGTGCATACTCTGACACGCACCATGTTGTTGTTGTACTTTACTGACTTTGTACAATGTCATGTACTTATAGTAGTGGACCTCTCTTGGACACCCTGAAGAGCACATAT]

[+] EMBL AK066200             [CCTGCATTTCCCCATCTCCTCCTCTGAGCAACTATATCGAGTTTCGACTACCATCTCAGCTTCGGTCTCGTATTCTCGTGGATCATCGGAAAGATGATCTCTACGGAAGAGGACTCTGATTCTTTTCAGGATGACAGCGAGGAACTGCAAATGCAGGTGACAAAGAAGACGTTGAAGCGTGTCATATCACTAGCCGAAACCTTCATCGCCATAGCAACCGGCATCCTCGCGGCAGCTTTCTCGGCAGGCAAAGATGTCCACCTGCACCGCCACGTCCTGGCCGCCGGCGGCTGCTTCCTCGTCGTGACATACCTGTCCGCTCTCCTGCTCATCTACATGAAGCTGTTCTTGTCAGATCACAGGCGGCTGCGCCGATGGCACGTCCGGTCCCTGCAGCTCCTGTGCGTGACCAGCGGCGCGTCGCTCGTCGCCACGAACTCCCTGCTCCTCGTCCTCATCGGCGAAGGCAATGGCTTGCTGTCGCTCAACCTGCTGCCCGTGCAGGGCATCGTCGGCGTGCTCGCGTACCACGCGACGCCGACGGAGGGGAGCGCGCGCGACGAGGCGTTCGAGGCGCAGGTCAAGAGCGCCCGCAAGGTCGCGCTGTTCGCGGCGGCCACGGCCTTCGCCGTGCAGACCACGCTCGTGTTTGGCGCGTTCAGCAACGCCGCCCTGCAGGCGATGGGCGGACGCCGGCTGGACCTCTCGGTGTCGTTCCTGGCGTCGGCGCTCAGCGTGTTCTTGGTCGTGGCGACGTGCATGCCGCTCGGGTTCAGGAACCAGGGCGCCAGGGACAAGGTGCTGTCCATCGTGAGGTACCTCAAGAAAGGCGTCATGGCCGTGCTCGCGGTCACCGCGGTGACTCTCGGCCAGGAGTTCCTCGGTGGCGCCGCGGCGCTCGCGCTCTTCCCGGAGATCACCGTCGCCGCCATGTACTACGCCGTGAGCATGCCCGCCGACGAGGCGGCCGCGGCCGCTGACCGCAAGATGGAGGTGCTTCCGACCGTCGTCGTGGCGACGTTCGGCTTCGGGATGCTCGGGGCGGCGTACGCGGCGCTGTTCGGCACGCCGGAGTACGACCTGTACACCAAGGCCCTGGCGTTCACCCTGCTCACCGCCGTCGTGTCCAGCCTGGGCCGCGTGGCGGGGCCGCTCTGCAACGCCCAGCGTGACAAGAGCTCGGCGGCGTGGGTGACATTCCTCAGCAGCATCCTCCCCATCGTGGAGATGCTGGTCGCCGTCCCGCTCGCCGCCAAGGTAATGGTTGATTTTCTCGCCGTTCCTGGTAATGGCTGATTTTCTCGCCGTGCACTCACTAGCACTTGATGTCTTGATCACTTGTACAAATTCTTCGAACACGATACGTGCATACTCTGACACGCACCATGTTGTTGTTGTACTTTACTGACTTTGTACAATGTCATGTACTTATAGTAGTGGACCTCTCTTGGACACCCTGAAGAGCACATAT]
[+] EMBL CB662840             [                                                                                         AAAGATGATCTCTACGGAAGAGGACTCTGATTCTTTTCAGGATGACAGCGAGGAACTGCAAATGCAGGTGACAAAGAAGACGTTGAAGCGTGTCATATCACTAGCCGAAACCTTCATCGCCATAGCAACCGGCATCCTCGCGGCAGCTTTCTCGGCAGGCAAAGATGTCCACCTGCACCGCCACGTCCTGGCCGCCGGCGGCTGCTTCCTCGTCGTGACATACCTGTCCGCTCTCCTGCTCATCTACATGAAGCTGTTCTTGTCAGATCACAGGCGGCTGCGCCGATGGCACGTCCGGTCCCTGCAGCTCCTGTGCGTGACCAGCGGCGCGTCGCTCGTCGCCACGAACTCCCTGCTCCTCGTCCTCATCGGCGAAGGCAATGGCTTGCTGTCGCTCAACCTGCTGCCCGTGCAGGGCATCGTCGGCGTGCTCGCGTACCACGCGACGCCGACGGAGGGGAGCGCGCGCGACGAGGCGTTCGAGGCGCAGGTCAAGAGCGCCCGCAAGGTCGCGCTGTTCGCGGCGGCCACGGCCTTCGCCGTGCAGACCACGCTCGTGTTTGGCGCGTTCAGCAACGCCGCCCTGCAGGCGATGGGCGGACGCCGGCTGGACCTCTCGGTGTCGTTCCTGGCGTCGGCGCTCAGCGTGTTCTTGGTCGTGGCGACGTGCATGCCGCTCGGGTTCAGGAACCAGGGCGCCAGGGACAAGGTGCTGTCCATCGTGAGGTACCTCAAGAAAGGCGTCATGGCCGTGCTCGCGGTCACCGCGGTGACTCTCGGCCAGGAGTTTCTCGGTGGCGCCGCGGCGCTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CB662841             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CGGACGCCGGCTGGACCTCTCGGTGTCGTTCCTGGCGTCGGCGCTCAGCGTGTTCTTGGTCGTGGCGACGTGCATGCCGCTCGGGTTCAGGAACCAGGGCGCCAGGGACAAGGTGCTGTCCATCGTGAGGTACCTCAAGAAAGGCGTCATGGCCGTGCTCGCGGTCACCGCGGTGACTCTCGGCCAGGAGTTCCTCGGTGGCGCCGCGGCGCTCGCGCTCTTCCCGGAGATCACCGTCGCCGCCATGTACTACGCCGTGAGCATGCCCGCCGACGAGGCGGCCGCGGCCGCTGACCGCAAGATGGAGGTGCTTCCGACCGTCGTCGTGGCGACGTTCGGCTTCGGGATGCTCGGGGCGGCGTACGCGGCGCTGTTCGGCACGCCGGAGTACGACCTGTACACCAAGGCCCTGGCGTTCACCCTGCTCACCGCCGTCGTGTCCAGCCTGGGCCGCGTGGCGGGGCCGCTCTGCAACGCCCAGCGTGACAAGAGCTCGGCGGCGTGGGTGACATTCCTCAGCAGCATCCTCCCCATCGTGGAGATGCTGGTCGCCGTCCCGCTCGCCGCCAAGGTAATGGTTGATTTTCTCGCCGTTCCTGGTAATGGCTGATTTTCTCGCCGTGCACTCACTAGCACTTGATGTCTTGATCACTTGTACAAATTCTTCGAACACGATACGTGCATACTCTGACACGCACCATGTTGTTGTTGTACTTTACTGACTTTGTACAAGGGCATGTACTTATAGTAGTGGACCTCTCTTGGAC                  ]


>consensus_5970#0 CCTGCATTTCCCCATCTCCTCCTCTGAGCAACTATATCGAGTTTCGACTACCATCTCAGC TTCGGTCTCGTATTCTCGTGGATCATCGGAAAGATGATCTCTACGGAAGAGGACTCTGAT TCTTTTCAGGATGACAGCGAGGAACTGCAAATGCAGGTGACAAAGAAGACGTTGAAGCGT GTCATATCACTAGCCGAAACCTTCATCGCCATAGCAACCGGCATCCTCGCGGCAGCTTTC TCGGCAGGCAAAGATGTCCACCTGCACCGCCACGTCCTGGCCGCCGGCGGCTGCTTCCTC GTCGTGACATACCTGTCCGCTCTCCTGCTCATCTACATGAAGCTGTTCTTGTCAGATCAC AGGCGGCTGCGCCGATGGCACGTCCGGTCCCTGCAGCTCCTGTGCGTGACCAGCGGCGCG TCGCTCGTCGCCACGAACTCCCTGCTCCTCGTCCTCATCGGCGAAGGCAATGGCTTGCTG TCGCTCAACCTGCTGCCCGTGCAGGGCATCGTCGGCGTGCTCGCGTACCACGCGACGCCG ACGGAGGGGAGCGCGCGCGACGAGGCGTTCGAGGCGCAGGTCAAGAGCGCCCGCAAGGTC GCGCTGTTCGCGGCGGCCACGGCCTTCGCCGTGCAGACCACGCTCGTGTTTGGCGCGTTC AGCAACGCCGCCCTGCAGGCGATGGGCGGACGCCGGCTGGACCTCTCGGTGTCGTTCCTG GCGTCGGCGCTCAGCGTGTTCTTGGTCGTGGCGACGTGCATGCCGCTCGGGTTCAGGAAC CAGGGCGCCAGGGACAAGGTGCTGTCCATCGTGAGGTACCTCAAGAAAGGCGTCATGGCC GTGCTCGCGGTCACCGCGGTGACTCTCGGCCAGGAGTTCCTCGGTGGCGCCGCGGCGCTC GCGCTCTTCCCGGAGATCACCGTCGCCGCCATGTACTACGCCGTGAGCATGCCCGCCGAC GAGGCGGCCGCGGCCGCTGACCGCAAGATGGAGGTGCTTCCGACCGTCGTCGTGGCGACG TTCGGCTTCGGGATGCTCGGGGCGGCGTACGCGGCGCTGTTCGGCACGCCGGAGTACGAC CTGTACACCAAGGCCCTGGCGTTCACCCTGCTCACCGCCGTCGTGTCCAGCCTGGGCCGC GTGGCGGGGCCGCTCTGCAACGCCCAGCGTGACAAGAGCTCGGCGGCGTGGGTGACATTC CTCAGCAGCATCCTCCCCATCGTGGAGATGCTGGTCGCCGTCCCGCTCGCCGCCAAGGTA ATGGTTGATTTTCTCGCCGTTCCTGGTAATGGCTGATTTTCTCGCCGTGCACTCACTAGC ACTTGATGTCTTGATCACTTGTACAAATTCTTCGAACACGATACGTGCATACTCTGACAC GCACCATGTTGTTGTTGTACTTTACTGACTTTGTACAATGTCATGTACTTATAGTAGTGG ACCTCTCTTGGACACCCTGAAGAGCACATAT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)