cluster # 5973

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Oryza sativa
cluster # 5973 cluster # 5973 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5973#0 length = 1507 sequences # 2

consensus_5973#1 length = 187 sequences # 1

consensusID : consensus_5973#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1507
fasta sequence

                              [GACATTTATACAAGGACTATCTCAGCTAGAGCAGTTGCAGCAGAGGCTTCCTTTCCTGAAGGGGATACTGGAGAAGAAATACATGAGCCAGCTTGTAACTGGGTACCTTCCCAGTGTCATACTGCAAATATTTTTATATGCCGTTGCACCGATAATGATATTATTTTCTACATTAGAGGGGCCTATATCTCACAGTGAAAGGAAGAGGAGTGCTTGCTGTAAAGTGCTGTACTTCACTGTTTGGAACATATTCTTTGGAAATGTACTATCTGGTACTGTCATAAGCCAATTGAATGTGTTATCAAGCCCAAAGGACATCCCTGTCCAGCTTGCTAGAGCTATACCTGTCCAGGCTACCTTCTTTATCACCTATGTTCTGACATCAGGATGGGCCAGTTTATCATCTGAACTTATGCAATTATTTGGTTTAATATGGAACTTTGTGAGGAAATATATTCTACGTATGCCAGAAGACACAGAGTTTGTTCCCTCATTCCCATATCACACAGAAGTGCCAAAAGTTTTGCTGTTCGGACTACTGGGCTTCACATGCTCTGTACTGGCACCTTTGATCTTACCTTTTCTGTTAGTGTACTTCTTCCTTGGTTACATCGTGTACCGCAATCAGTTGCTCAATGTTTACCGCACAAGATATGACACAGGGGGTTTGTACTGGCCAATCGCACACAACGCAGTGATATTCTCTCTCGTGCTCACACAGATTATCTGCCTTGGTGTATTTGGCCTGAAAGAATCACCAGTAGCTGCAGGCTTCACCATACCTCTTATCATCCTCACTCTGTTATTCAATCAGTATTGCAGAAATCGACTTCTCCCATTATTCAGAACTACCCCAGCACAGGATTTAATTGACATGGACAGGGAAGACGAACGGTCAGGAAGAATGGATGAAATTCACCACCGGCTTCATTCTGCCTATTGTCAGTTCCACGACACTGAAGATATACCCTTGGAGAAAATTCAGACTGTCGGGAGCGATGAGGAACAAGGGTGTAGCTCTGATAAGTCGAATGGAAAAGAAAGCTTCGAGGAACCCAGAGCGGAGTTGTCTCACCCAACACTGAATGGACTCCCAGTTAGCCGTCTTCGGCATGCTGTGAAGTCGATTACTTTCCTTGTCAGATTGCAGAAAAGAGGTTTGTCAGAATAGAATAGGACATCTAACTACTAACCCCTTCATCAGCCTGTTCAGCGATGAAAATGTACAGCCACATACATCATACAACATACATTGAGAGAGCATCAGGATACCTGAAAAGCAATTTTGTTGTTTTGATCCGTTTGATTTCCAAGCTAGTGACTCTAGGACATGCTAGTTAATCAGTATATTCAAGCCTTTGCCATGCAGATATTGTTGTAGTGCTAGGTCATTCTGTTACATGAAATTTAAACTTGTTTCTTTGGTAACCTCAGCTACTCTGCAACTCAATTACCCTCCTCTTCTAACTTCAACTCATCTGAGAATGTAAAACTGAAATTTCCATGC]

[+] EMBL AK103521             [GACATTTATACAAGGACTATCTCAGCTAGAGCAGTTGCAGCAGAGGCTTCCTTTCCTGAAGGGGATACTGGAGAAGAAATACATGAGCCAGCTTGTAACTGGGTACCTTCCCAGTGTCATACTGCAAATATTTTTATATGCCGTTGCACCGATAATGATATTATTTTCTACATTAGAGGGGCCTATATCTCACAGTGAAAGGAAGAGGAGTGCTTGCTGTAAAGTGCTGTACTTCACTGTTTGGAACATATTCTTTGGAAATGTACTATCTGGTACTGTCATAAGCCAATTGAATGTGTTATCAAGCCCAAAGGACATCCCTGTCCAGCTTGCTAGAGCTATACCTGTCCAGGCTACCTTCTTTATCACCTATGTTCTGACATCAGGATGGGCCAGTTTATCATCTGAACTTATGCAATTATTTGGTTTAATATGGAACTTTGTGAGGAAATATATTCTACGTATGCCAGAAGACACAGAGTTTGTTCCCTCATTCCCATATCACACAGAAGTGCCAAAAGTTTTGCTGTTCGGACTACTGGGCTTCACATGCTCTGTACTGGCACCTTTGATCTTACCTTTTCTGTTAGTGTACTTCTTCCTTGGTTACATCGTGTACCGCAATCAGTTGCTCAATGTTTACCGCACAAGATATGACACAGGGGGTTTGTACTGGCCAATCGCACACAACGCAGTGATATTCTCTCTCGTGCTCACACAGATTATCTGCCTTGGTGTATTTGGCCTGAAAGAATCACCAGTAGCTGCAGGCTTCACCATACCTCTTATCATCCTCACTCTGTTATTCAATCAGTATTGCAGAAATCGACTTCTCCCATTATTCAGAACTACCCCAGCACAGGATTTAATTGACATGGACAGGGAAGACGAACGGTCAGGAAGAATGGATGAAATTCACCACCGGCTTCATTCTGCCTATTGTCAGTTCCACGACACTGAAGATATACCCTTGGAGAAAATTCAGACTGTCGGGAGCGATGAGGAACAAGGGTGTAGCTCTGATAAGTCGAATGGAAAAGAAAGCTTCGAGGAACCCAGAGCGGAGTTGTCTCACCCAACACTGAATGGACTCCCAGTTAGCCGTCTTCGGCATGCTGTGAAGTCGATTACTTTCCTTGTCAGATTGCAGAAAAGAGGTTTGTCAGAATAGAATAGGACATCTAACTACTAACCCCTTCATCAGCCTGTTCAGCGATGAAAATGTACAGCCACATACATCATACAACATACATTGAGAGAGCATCAGGATACCTGAAAAGCAATTTTGTTGTTTTGATCCGTTTGATTTCCAAGCTAGTGACTCTAGGACATGCTAGTTAATCAGTATATTCAAGCCTTTGCCATGCAGATATTGTTGTAGTGCTAGGTCATTCTGTTACATGAAATTTAAACTTGTTTCTTTGGTAACCTCAGCTACTCTGCAACTCAATTACCCTCCTCTTCTAACTTCAACTCATCTGAGAATGTAAAACTGAAATTTCCATGC]
[+] EMBL CF304298             [GACATTTATACAAGGACTATCTCAGCTAGAGCAGTTGCAGCAGAGGCTTCCTTTCCTGAAGGGGATACTGGAGAAGAAATACATGAGCCAGCTTGTAACTGGGTACCTTCCCAGTGTCATACTGCAAATATTTTTATATGCCGTTGCACCGATAATGATATTATTTTCTACATTAGAGGGGCCTATATCTCACAGTGAAAGGAAGAGGAGTGCTTGCTGTAAAGTGCTGTACTTCACTGTTTGGAACATATTCTTTGGAAATGTACTATCTGGTACTGTCATAAGCCAATTGAATGTGTTATCAAGCCCAAAGGACATCCCTGTCCAGCTTGCTAGAGCTATACCTGTCCAGGCTACCTTCTTTATac                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]




>consensus_5973#0
GACATTTATACAAGGACTATCTCAGCTAGAGCAGTTGCAGCAGAGGCTTCCTTTCCTGAA
GGGGATACTGGAGAAGAAATACATGAGCCAGCTTGTAACTGGGTACCTTCCCAGTGTCAT
ACTGCAAATATTTTTATATGCCGTTGCACCGATAATGATATTATTTTCTACATTAGAGGG
GCCTATATCTCACAGTGAAAGGAAGAGGAGTGCTTGCTGTAAAGTGCTGTACTTCACTGT
TTGGAACATATTCTTTGGAAATGTACTATCTGGTACTGTCATAAGCCAATTGAATGTGTT
ATCAAGCCCAAAGGACATCCCTGTCCAGCTTGCTAGAGCTATACCTGTCCAGGCTACCTT
CTTTATCACCTATGTTCTGACATCAGGATGGGCCAGTTTATCATCTGAACTTATGCAATT
ATTTGGTTTAATATGGAACTTTGTGAGGAAATATATTCTACGTATGCCAGAAGACACAGA
GTTTGTTCCCTCATTCCCATATCACACAGAAGTGCCAAAAGTTTTGCTGTTCGGACTACT
GGGCTTCACATGCTCTGTACTGGCACCTTTGATCTTACCTTTTCTGTTAGTGTACTTCTT
CCTTGGTTACATCGTGTACCGCAATCAGTTGCTCAATGTTTACCGCACAAGATATGACAC
AGGGGGTTTGTACTGGCCAATCGCACACAACGCAGTGATATTCTCTCTCGTGCTCACACA
GATTATCTGCCTTGGTGTATTTGGCCTGAAAGAATCACCAGTAGCTGCAGGCTTCACCAT
ACCTCTTATCATCCTCACTCTGTTATTCAATCAGTATTGCAGAAATCGACTTCTCCCATT
ATTCAGAACTACCCCAGCACAGGATTTAATTGACATGGACAGGGAAGACGAACGGTCAGG
AAGAATGGATGAAATTCACCACCGGCTTCATTCTGCCTATTGTCAGTTCCACGACACTGA
AGATATACCCTTGGAGAAAATTCAGACTGTCGGGAGCGATGAGGAACAAGGGTGTAGCTC
TGATAAGTCGAATGGAAAAGAAAGCTTCGAGGAACCCAGAGCGGAGTTGTCTCACCCAAC
ACTGAATGGACTCCCAGTTAGCCGTCTTCGGCATGCTGTGAAGTCGATTACTTTCCTTGT
CAGATTGCAGAAAAGAGGTTTGTCAGAATAGAATAGGACATCTAACTACTAACCCCTTCA
TCAGCCTGTTCAGCGATGAAAATGTACAGCCACATACATCATACAACATACATTGAGAGA
GCATCAGGATACCTGAAAAGCAATTTTGTTGTTTTGATCCGTTTGATTTCCAAGCTAGTG
ACTCTAGGACATGCTAGTTAATCAGTATATTCAAGCCTTTGCCATGCAGATATTGTTGTA
GTGCTAGGTCATTCTGTTACATGAAATTTAAACTTGTTTCTTTGGTAACCTCAGCTACTC
TGCAACTCAATTACCCTCCTCTTCTAACTTCAACTCATCTGAGAATGTAAAACTGAAATT
TCCATGC

consensusID : consensus_5973#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 187
fasta sequence

                              [TTACTTNCCTTGTCANATTGCANAAAANNGGTTTNTCANAATAGAANNGGATNTCTAACTACTAACCCCTTCATCAGCCTGTTCAGCGATGAAAATGTACAGCCNCATACATCATACAACATACATTGAGAGAGCATCAGGATNCCTNAAAANCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL OSC5801              [TTACTTNCCTTGTCANATTGCANAAAANNGGTTTNTCANAATAGAANNGGATNTCTAACTACTAACCCCTTCATCAGCCTGTTCAGCGATGAAAATGTACAGCCNCATACATCATACAACATACATTGAGAGAGCATCAGGATNCCTNAAAANCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_5973#1
TTACTTNCCTTGTCANATTGCANAAAANNGGTTTNTCANAATAGAANNGGATNTCTAACT
ACTAACCCCTTCATCAGCCTGTTCAGCGATGAAAATGTACAGCCNCATACATCATACAAC
ATACATTGAGAGAGCATCAGGATNCCTNAAAANCAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5973#0      GACATTTATACAAGGACTATCTCAGCTAGAGCAGTTGCAGCAGAGGCTTCCTTTCCTGAA 60
consensus_5973#1      ------------------------------------------------------------
                                                                                  

consensus_5973#0      GGGGATACTGGAGAAGAAATACATGAGCCAGCTTGTAACTGGGTACCTTCCCAGTGTCAT 120
consensus_5973#1      ------------------------------------------------------------
                                                                                  

consensus_5973#0      ACTGCAAATATTTTTATATGCCGTTGCACCGATAATGATATTATTTTCTACATTAGAGGG 180
consensus_5973#1      ------------------------------------------------------------
                                                                                  

consensus_5973#0      GCCTATATCTCACAGTGAAAGGAAGAGGAGTGCTTGCTGTAAAGTGCTGTACTTCACTGT 240
consensus_5973#1      ------------------------------------------------------------
                                                                                  

consensus_5973#0      TTGGAACATATTCTTTGGAAATGTACTATCTGGTACTGTCATAAGCCAATTGAATGTGTT 300
consensus_5973#1      ------------------------------------------------------------
                                                                                  

consensus_5973#0      ATCAAGCCCAAAGGACATCCCTGTCCAGCTTGCTAGAGCTATACCTGTCCAGGCTACCTT 360
consensus_5973#1      ------------------------------------------------------------
                                                                                  

consensus_5973#0      CTTTATCACCTATGTTCTGACATCAGGATGGGCCAGTTTATCATCTGAACTTATGCAATT 420
consensus_5973#1      ------------------------------------------------------------
                                                                                  

consensus_5973#0      ATTTGGTTTAATATGGAACTTTGTGAGGAAATATATTCTACGTATGCCAGAAGACACAGA 480
consensus_5973#1      ------------------------------------------------------------
                                                                                  

consensus_5973#0      GTTTGTTCCCTCATTCCCATATCACACAGAAGTGCCAAAAGTTTTGCTGTTCGGACTACT 540
consensus_5973#1      ------------------------------------------------------------
                                                                                  

consensus_5973#0      GGGCTTCACATGCTCTGTACTGGCACCTTTGATCTTACCTTTTCTGTTAGTGTACTTCTT 600
consensus_5973#1      ------------------------------------------------------------
                                                                                  

consensus_5973#0      CCTTGGTTACATCGTGTACCGCAATCAGTTGCTCAATGTTTACCGCACAAGATATGACAC 660
consensus_5973#1      ------------------------------------------------------------
                                                                                  

consensus_5973#0      AGGGGGTTTGTACTGGCCAATCGCACACAACGCAGTGATATTCTCTCTCGTGCTCACACA 720
consensus_5973#1      ------------------------------------------------------------
                                                                                  

consensus_5973#0      GATTATCTGCCTTGGTGTATTTGGCCTGAAAGAATCACCAGTAGCTGCAGGCTTCACCAT 780
consensus_5973#1      ------------------------------------------------------------
                                                                                  

consensus_5973#0      ACCTCTTATCATCCTCACTCTGTTATTCAATCAGTATTGCAGAAATCGACTTCTCCCATT 840
consensus_5973#1      ------------------------------------------------------------
                                                                                  

consensus_5973#0      ATTCAGAACTACCCCAGCACAGGATTTAATTGACATGGACAGGGAAGACGAACGGTCAGG 900
consensus_5973#1      ------------------------------------------------------------
                                                                                  

consensus_5973#0      AAGAATGGATGAAATTCACCACCGGCTTCATTCTGCCTATTGTCAGTTCCACGACACTGA 960
consensus_5973#1      ------------------------------------------------------------
                                                                                  

consensus_5973#0      AGATATACCCTTGGAGAAAATTCAGACTGTCGGGAGCGATGAGGAACAAGGGTGTAGCTC 1020
consensus_5973#1      ------------------------------------------------------------
                                                                                  

consensus_5973#0      TGATAAGTCGAATGGAAAAGAAAGCTTCGAGGAACCCAGAGCGGAGTTGTCTCACCCAAC 1080
consensus_5973#1      ------------------------------------------------------------
                                                                                  

consensus_5973#0      ACTGAATGGACTCCCAGTTAGCCGTCTTCGGCATGCTGTGAAGTCGATTACTTTCCTTGT 1140
consensus_5973#1      -----------------------------------------------TTACTTNCCTTGT 13
                                                                     ****** ******

consensus_5973#0      CAGATTGCAGAAAAGAGGTTTGTCAGAATAGAATAGGACATCTAACTACTAACCCCTTCA 1200
consensus_5973#1      CANATTGCANAAAANNGGTTTNTCANAATAGAANNGGATNTCTAACTACTAACCCCTTCA 73
                      ** ****** ****  ***** *** *******  ***  ********************

consensus_5973#0      TCAGCCTGTTCAGCGATGAAAATGTACAGCCACATACATCATACAACATACATTGAGAGA 1260
consensus_5973#1      TCAGCCTGTTCAGCGATGAAAATGTACAGCCNCATACATCATACAACATACATTGAGAGA 133
                      ******************************* ****************************

consensus_5973#0      GCATCAGGATACCTGAAAAGCAATTTTGTTGTTTTGATCCGTTTGATTTCCAAGCTAGTG 1320
consensus_5973#1      GCATCAGGATNCCTNAAAANCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------ 187
                      ********** *** **** ***             *        *     **       

consensus_5973#0      ACTCTAGGACATGCTAGTTAATCAGTATATTCAAGCCTTTGCCATGCAGATATTGTTGTA 1380
consensus_5973#1      ------------------------------------------------------------
                                                                                  

consensus_5973#0      GTGCTAGGTCATTCTGTTACATGAAATTTAAACTTGTTTCTTTGGTAACCTCAGCTACTC 1440
consensus_5973#1      ------------------------------------------------------------
                                                                                  

consensus_5973#0      TGCAACTCAATTACCCTCCTCTTCTAACTTCAACTCATCTGAGAATGTAAAACTGAAATT 1500
consensus_5973#1      ------------------------------------------------------------
                                                                                  

consensus_5973#0      TCCATGC 1507
consensus_5973#1      -------