Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5983 cluster # 5983       Sequences # 3       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5983#0 length = 2313 sequences # 3  
consensusID : consensus_5983#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2313
fasta sequence 
                              [CCGCGTCACCACTACTCCCCTCTCCTCTTCACAAGCGATGGCGGCGGCGACTCCGGCGAGCGGCGGCGGCGGCGGCGGGTACTCGTGCGAGACGGCGGAGCAGACCCGCGAGTGGATGGAGGCCATCTCCGCCTTTCTCCACCTCCACCGCCCGCTCCTCGAGGCGCACGTCGTCAACTTCTTCAAGGATCGGCTGTGGGAGATGGTGGATGCGGAGTGGATGGAGTGCCTCCGCAGGGAGCCCGTGGAGAGCTTGCTCATGTTGCCCTCCGGGTGTGTTCAGGAGCACTGGCCCAGTTCATTGCGAGATTTTGTACTCACTGCAAAGTCACTTGTTCTTCCACGGGAGCAGAAGTCACCGCGATCACTCCTACCCGACTTGCATGTAGCATCAATTAATACTGTTCTCGCTCAAGGAATGAACTCCAAGAAGAAGCATGAAATTGAAACTCTAGCTGGGTTGGTTCATGCAATTACCAAGAGCTGTGGAGCAAAGACAGTGATTGATGTAGGTTCTGGCCAGGGTTATCTTGCCCAAGCCTTATCTTTTGAGTACCAACTCCCTGTTGTAGCAATAGATGCTTCATCACATCATGCATCAGTTACAAATACTCGTGCAGAAAGAATAAAGAAGTACTACACTGCTAAATGTGTAGGGAAGCAACAGCTCAGAGTACCTAGAACTGTTACTTGCCATGTACTTTCTAGTGACACATTAGCAGCTGTGACATTGGAAGCATGTCAGGATGATCATGCTGAACATATACCAGAAAGTAAAAACTTCAACGAGAGCAGTCCACAAATTGAGAAACCAAATGACAGCATTCCTCCATTAGTCCTTGCTGGTCTTCATGCTTGTGGTGATCTTTCAGTTAACATGCTAAGGCTTTTTGTGTCGTGCGAACAAGTAAAAGCATTGATAAGCATTGGCTGTTGCTACAACTTACTCTCTGAGGAATGCCACGAAGACACAAATACCTGTCCTGGTTTTCCTATGAGCAAGGCTGCTAAACTATCTAATTTGGTGCTTAGGAAAAGCACCCGTGACCTTGGTTGCCAGAGTGCAGAGAGATGGAGAAGTCTCACTAAGGACATAGCCCTACAAAATTTTGATATACATGCCTTCCGTGCTGCATTTCAAATGTTTCTTGAGAAACATTTCCCAGAGGTGTCAAGATCGAGTCCATCAATTGGGAGGCAAGGAAAAGCACTACGCCGTCAAAGGCTTAGGAAAGTTATGGAATCCCCTATGGCTATGGCAGAAACTGACGCTTTATCATATTCCACTCAAAAGGAACAAATCATGACCAAAGACGATCCACTGCCCACAGGCCCTAATAATTTTAAAGAGGTTCATGTAGACTTTCTTCCCGAGCTTTCAACAGGGTTTGTTGATTCAGCTGTATCTGGAGCTGCCGTTGTACCAGATGACATCTATCTTGATAAATCACAAAAGTTCACCCTGTTTAAAGATTTCACAGTGTCAGGATTAGGTCGCCTTGGCTGTGATTT-TGTGGAAAATGTTAGTTTACTTGAAATATGGAAGGACGTGCAACCCTTCACGGAATTTATAGGTCCCTTCTGGTGCCTTCGGGTTGCTTTAGGGCCACTGGTGGAAACATATATTTTACTTGACCGGTTACTATTTCTTCAAGAGCAAGGCAGTGTTATTGAAGCATCTTTGTTTCCGCTTTTCAATCCCACTATGTCTCCAAGGAACATGGCAATTATTGCTTGGAAGTTGTCTGCAAATCCTTCAAAAGTGTGACATGGTAGGATGGAGTTCTCAGTTTCCAACACTGCAGAAGTCCTTGCAAATCCATATACGGGAGAGTGGAAGATTTTGCCCTCGAACAGTGTGCCTTTATCCAATAAATGCTAAGTCAACATCTAGAACGGTTCCAAGGCCATCCGGTGCATGGCTGCTTGTCTCTCTGAAGTGATATCATACAAGTTGCCACCAAACTTCACATTCCCTGCAGGCTGCGATATGTTTATGCAAGATCGACAAGCTATCACTAATCAAGGAAAAAGTTGACGAGTCACCTTTTGTCTACAGATATACAACTCGCTGTTATTATTTATACTTCTTTGAAGTAGATTAATCTTTATATTATCCTAACTGGCTGGAAAATATGTTCAGCAAAGCAACACGGATGAATTGTTTCATGAGATCTTATTTCTTGCCTATCCTTATTCAATCGGTAAGCTTGTGTTTGATATATGTGAAATCATTTGGAGAAGTCAGCACAGCAGGGTTTGGCTGAGAGAGACAAATAAGATTTGCTGTAAGCTGCCTAATTAAAAAAAAAA]

[+] EMBL AK106471             [CCGCGTCACCACTACTCCCCTCTCCTCTTCACAAGCGATGGCGGCGGCGACTCCGGCGAGCGGCGGCGGCGGCGGCGGGTACTCGTGCGAGACGGCGGAGCAGACCCGCGAGTGGATGGAGGCCATCTCCGCCTTTCTCCACCTCCACCGCCCGCTCCTCGAGGCGCACGTCGTCAACTTCTTCAAGGATCGGCTGTGGGAGATGGTGGATGCGGAGTGGATGGAGTGCCTCCGCAGGGAGCCCGTGGAGAGCTTGCTCATGTTGCCCTCCGGGTGTGTTCAGGAGCACTGGCCCAGTTCATTGCGAGATTTTGTACTCACTGCAAAGTCACTTGTTCTTCCACGGGAGCAGAAGTCACCGCGATCACTCCTACCCGACTTGCATGTAGCATCAATTAATACTGTTCTCGCTCAAGGAATGAACTCCAAGAAGAAGCATGAAATTGAAACTCTAGCTGGGTTGGTTCATGCAATTACCAAGAGCTGTGGAGCAAAGACAGTGATTGATGTAGGTTCTGGCCAGGGTTATCTTGCCCAAGCCTTATCTTTTGAGTACCAACTCCCTGTTGTAGCAATAGATGCTTCATCACATCATGCATCAGTTACAAATACTCGTGCAGAAAGAATAAAGAAGTACTACACTGCTAAATGTGTAGGGAAGCAACAGCTCAGAGTACCTAGAACTGTTACTTGCCATGTACTTTCTAGTGACACATTAGCAGCTGTGACATTGGAAGCATGTCAGGATGATCATGCTGAACATATACCAGAAAGTAAAAACTTCAACGAGAGCAGTCCACAAATTGAGAAACCAAATGACAGCATTCCTCCATTAGTCCTTGCTGGTCTTCATGCTTGTGGTGATCTTTCAGTTAACATGCTAAGGCTTTTTGTGTCGTGCGAACAAGTAAAAGCATTGATAAGCATTGGCTGTTGCTACAACTTACTCTCTGAGGAATGCCACGAAGACACAAATACCTGTCCTGGTTTTCCTATGAGCAAGGCTGCTAAACTATCTAATTTGGTGCTTAGGAAAAGCACCCGTGACCTTGGTTGCCAGAGTGCAGAGAGATGGAGAAGTCTCACTAAGGACATAGCCCTACAAAATTTTGATATACATGCCTTCCGTGCTGCATTTCAAATGTTTCTTGAGAAACATTTCCCAGAGGTGTCAAGATCGAGTCCATCAATTGGGAGGCAAGGAAAAGCACTACGCCGTCAAAGGCTTAGGAAAGTTATGGAATCCCCTATGGCTATGGCAGAAACTGACGCTTTATCATATTCCACTCAAAAGGAACAAATCATGACCAAAGACGATCCACTGCCCACAGGCCCTAATAATTTTAAAGAGGTTCATGTAGACTTTCTTCCCGAGCTTTCAACAGGGTTTGTTGATTCAGCTGTATCTGGAGCTGCCGTTGTACCAGATGACATCTATCTTGATAAATCACAAAAGTTCACCCTGTTTAAAGATTTCACAGTGTCAGGATTAGGTCGCCTTGGCTGTGATTT TGTGGAAAATGTTAGTTTACTTGAAATATGGAAGGACGTGCAACCCTTCACGGAATTTATAGGTCCCTTCTGGTGCCTTCGGGTTGCTTTAGGGCCACTGGTGGAAACATATATTTTACTTGACCGGTTACTATTTCTTCAAGAGCAAGGCAGTGTTATTGAAGCATCTTTGTTTCCGCTTTTCAATCCCACTATGTCTCCAAGGAACATGGCAATTATTGCTTGGAAGTTGTCTGCAAATCCTTCAAAAGTGTGACATGGTAGGATGGAGTTCTCAGTTTCCAACACTGCAGAAGTCCTTGCAAATCCATATACGGGAGAGTGGAAGATTTTGCCCTCGAACAGTGTGCCTTTATCCAATAAATGCTAAGTCAACATCTAGAACGGTTCCAAGGCCATCCGGTGCATGGCTGCTTGTCTCTCTGAAGTGATATCATACAAGTTGCCACCAAACTTCACATTCCCTGCAGGCTGCGATATGTTTATGCAAGATCGACAAGCTATCACTAATCAAGGAAAAAGTTGACGAGTCACCTTTTGTCTACAGATATACAACTCGCTGTTATTATTTATACTTCTTTGAAGTAGATTAATCTTTATATTATCCTAACTGGCTGGAAAATATGTTCAGCAAAGCAACACGGATGAATTGTTTCATGAGATCTTATTTCTTGCCT                                                                                                                            ]
[+] EMBL CB644304             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TTCAGTTAACATGCTAAGGCTTTTTGTGTCGTGCGAACAAGTAAAAGCATTGATAAGCATTGGCTGTTGCTACAACTTACTCTCTGAGGAATGCCACGAAGACACAAATACCTGTCCTGGTTTTCCTATGAGCAAGGCTGCTAAACTATCTAATTTGGTGCTTAGGAAAAGCACCCGTGACCTTGGTTGCCAGAGTGCAGAGAGATGGAGAAGTCTCACTAAGGACATAGCCCTACAAAATTTTGATATACATGCCTTCCGTGCTGCATTTCAAATGTTTCTTGAGAAACATTTCCCAGAGGTGTCAAGATCGAGTCCATCAATTGGGAGGCAAGGAAAAGCACTACGCCGTCAAAGGCTTAGGAAAGTTATGGAATCCCCTATGGCTATGGCAGAAACTGACGCTTTATCATATTCCACTCAAAAGGAACAAATCATGACCAAAGACGATCCACTGCCCACAGGCCCTAATAATTTTAAAGAGGTTCATGTAGACTTTCTTCCCGAGCTTTCAACAGGGTTTGTTGATTCAGCTGTATCTGGAGCTGCCGTTGTACCAGATGACATCTATCTTGATAAATCACAAAAGTTCACCCTGTTTAAAGATTTCACAGTGTCAGGATTAGGTCGCCTTGGCTGTGATTT TGTGGAAAATGTTAGTTTACTTGAAATATGGAAGGACGTGCAACCCTTCACGGAATTTATAGGTCCCTTCTGGTGCCTTCGGGTTGCTTTAGGGCCACTGGTGGAAACATATATTTTACTTGACCGGTTACTATTTCTTCAAGAGCAAGGCAGTGGTATTGAAGCATCTTTGTTTTCGCTTTTCAATCCCACTATGTCTCCAAGGAACATGGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CB644305             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TTAGGTCGCCTTGGCTGTGATTTGTG GGAAAATGTTAGTTTACTTGAAATATGGAAGGACGTGCAACCCTTCACGGAATTTATAGGTCCCTTCTGGTGCCTTCGGGTTGCTTTAGGGCCACTGGTGGAAACATATATTTTACTTGACCGGTTACTATTTCTTCAAGAGCAAGGCAGTGTTATTGAAGCATCTTTGTTTCCGCTTTTCAATCCCACTATGTCTCCAAGGAACATGGCAATTATTGCTTGGAAGTTGTCTGCAAATCCTTCAAAAGTGTGACATGGTAGGATGGAGTTCTCAGTTTCCAACACTGCAGAAGTCCTTGCAAATCCATATACGGGAGAGTGGAAGATTTTGCCCTCGAACAGTGTGCCTTTATCCAATAAATGCTAAGTCAACATCTAGAACGGTTCCAAGGCCATCCGGTGCATGGCTGCTTGTCTCTCTGAAGTGATATCATACAAGTTGCCACCAAACTTCACATTCCCTGCAGGCTGCAATATGTTTATGCAAGATCGACAAGCTATCACTAATCAAGGAAAAAGTTGACGAGTCACCTTTTGTCTACAGATATACAACTCGCTGTTATTATTTATACTTCTTTGAAGTAGATTAATCTTTATATTATCCTAACTGGCTGGAAAATATGTTCAGCAAAGCAACACGGATGAATTGTTTCATGAGATCTTATTTCTTGCCTATCCTTATTCAATCGGTAAGCTTGTGTTTGATATATGTGAAATCATTTGGAGAAGTCAGCACAGCAGGGTTTGGCTGAGAGAGACAAATAAGATTTGCTGTAAGCTGCCTAATTAAAAAAAAAA]




>consensus_5983#0
CCGCGTCACCACTACTCCCCTCTCCTCTTCACAAGCGATGGCGGCGGCGACTCCGGCGAG
CGGCGGCGGCGGCGGCGGGTACTCGTGCGAGACGGCGGAGCAGACCCGCGAGTGGATGGA
GGCCATCTCCGCCTTTCTCCACCTCCACCGCCCGCTCCTCGAGGCGCACGTCGTCAACTT
CTTCAAGGATCGGCTGTGGGAGATGGTGGATGCGGAGTGGATGGAGTGCCTCCGCAGGGA
GCCCGTGGAGAGCTTGCTCATGTTGCCCTCCGGGTGTGTTCAGGAGCACTGGCCCAGTTC
ATTGCGAGATTTTGTACTCACTGCAAAGTCACTTGTTCTTCCACGGGAGCAGAAGTCACC
GCGATCACTCCTACCCGACTTGCATGTAGCATCAATTAATACTGTTCTCGCTCAAGGAAT
GAACTCCAAGAAGAAGCATGAAATTGAAACTCTAGCTGGGTTGGTTCATGCAATTACCAA
GAGCTGTGGAGCAAAGACAGTGATTGATGTAGGTTCTGGCCAGGGTTATCTTGCCCAAGC
CTTATCTTTTGAGTACCAACTCCCTGTTGTAGCAATAGATGCTTCATCACATCATGCATC
AGTTACAAATACTCGTGCAGAAAGAATAAAGAAGTACTACACTGCTAAATGTGTAGGGAA
GCAACAGCTCAGAGTACCTAGAACTGTTACTTGCCATGTACTTTCTAGTGACACATTAGC
AGCTGTGACATTGGAAGCATGTCAGGATGATCATGCTGAACATATACCAGAAAGTAAAAA
CTTCAACGAGAGCAGTCCACAAATTGAGAAACCAAATGACAGCATTCCTCCATTAGTCCT
TGCTGGTCTTCATGCTTGTGGTGATCTTTCAGTTAACATGCTAAGGCTTTTTGTGTCGTG
CGAACAAGTAAAAGCATTGATAAGCATTGGCTGTTGCTACAACTTACTCTCTGAGGAATG
CCACGAAGACACAAATACCTGTCCTGGTTTTCCTATGAGCAAGGCTGCTAAACTATCTAA
TTTGGTGCTTAGGAAAAGCACCCGTGACCTTGGTTGCCAGAGTGCAGAGAGATGGAGAAG
TCTCACTAAGGACATAGCCCTACAAAATTTTGATATACATGCCTTCCGTGCTGCATTTCA
AATGTTTCTTGAGAAACATTTCCCAGAGGTGTCAAGATCGAGTCCATCAATTGGGAGGCA
AGGAAAAGCACTACGCCGTCAAAGGCTTAGGAAAGTTATGGAATCCCCTATGGCTATGGC
AGAAACTGACGCTTTATCATATTCCACTCAAAAGGAACAAATCATGACCAAAGACGATCC
ACTGCCCACAGGCCCTAATAATTTTAAAGAGGTTCATGTAGACTTTCTTCCCGAGCTTTC
AACAGGGTTTGTTGATTCAGCTGTATCTGGAGCTGCCGTTGTACCAGATGACATCTATCT
TGATAAATCACAAAAGTTCACCCTGTTTAAAGATTTCACAGTGTCAGGATTAGGTCGCCT
TGGCTGTGATTTTGTGGAAAATGTTAGTTTACTTGAAATATGGAAGGACGTGCAACCCTT
CACGGAATTTATAGGTCCCTTCTGGTGCCTTCGGGTTGCTTTAGGGCCACTGGTGGAAAC
ATATATTTTACTTGACCGGTTACTATTTCTTCAAGAGCAAGGCAGTGTTATTGAAGCATC
TTTGTTTCCGCTTTTCAATCCCACTATGTCTCCAAGGAACATGGCAATTATTGCTTGGAA
GTTGTCTGCAAATCCTTCAAAAGTGTGACATGGTAGGATGGAGTTCTCAGTTTCCAACAC
TGCAGAAGTCCTTGCAAATCCATATACGGGAGAGTGGAAGATTTTGCCCTCGAACAGTGT
GCCTTTATCCAATAAATGCTAAGTCAACATCTAGAACGGTTCCAAGGCCATCCGGTGCAT
GGCTGCTTGTCTCTCTGAAGTGATATCATACAAGTTGCCACCAAACTTCACATTCCCTGC
AGGCTGCGATATGTTTATGCAAGATCGACAAGCTATCACTAATCAAGGAAAAAGTTGACG
AGTCACCTTTTGTCTACAGATATACAACTCGCTGTTATTATTTATACTTCTTTGAAGTAG
ATTAATCTTTATATTATCCTAACTGGCTGGAAAATATGTTCAGCAAAGCAACACGGATGA
ATTGTTTCATGAGATCTTATTTCTTGCCTATCCTTATTCAATCGGTAAGCTTGTGTTTGA
TATATGTGAAATCATTTGGAGAAGTCAGCACAGCAGGGTTTGGCTGAGAGAGACAAATAA
GATTTGCTGTAAGCTGCCTAATTAAAAAAAAAA

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)