cluster # 5997

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Oryza sativa
cluster # 5997 cluster # 5997 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5997#0 length = 986 sequences # 2

consensus_5997#1 length = 406 sequences # 1

consensusID : consensus_5997#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 986
fasta sequence

                              [CCTCCCCCTCCCCTGTTCATTATCTTCTCTCACGGCCGTTGGCGGGCGGCGGCGGCGGCGGCGCAGAGCTACGAGGGCGGTGGCGGCGCGGAGCTGCGAAATCGACGACTACGGCGGCAGCGGCTGCGTGGAGCTGTAAGGGCGGCGGCTGCGGCGGCGGCGTGGAGCTGCGAGGGCAGTGGCGGCGGGGAGCTGGTGCGAGGGCGGCAGCTGCGGCATCGGCGGCGCGGAGCTGCGAAATCGACAGCTACGGCGGCAGCGTAGAGCTGCGAGGGCGGCTGCGGTTGCGTGGAGCTGCGAGGGCGGCGGCTGCGGTGGCGGCGTGGAGCCGCGAGGGCGGTGGCGGCGGGGAGTTGGTGCGAGGGCGGCGACGCTGCGAATCACGAGCTTGTTGCCTCGCTCAGAAGTGGCCGACCTCGCCGGAGCCATACGCGCGGGGAGGAGTCATCCCTATGCGCTCGCGCCGCCACCGCTTGGTCGAGGACGAGGTCGAGCTCAAGCTCTACATCCGCCGCCGCCTCGTCGAGCTTGAGTTCCTCATCCCCAAGCAGCTCGAGTTCCACCGGCGAGCTCGAACATGGAGAAGATGGAGTTATGGAGCTCCTGGAGCCGGCAGAAGAGGTAGACCTTTGAGCTCGTGCTCGCCGGCGGTCGGCACGGAAGGGAAGGCTGGGGATGTGCTTGAGCTCCGTCGCCGCAACGAGTCCCCTGCTCCACGGCCACCGATCTCCTGCTCAGCTCCACCGCTGCTCTCTGTCTGGGAGGAAGAAGGATAGAGAAAGAAAGGGAAGAGGAGATGGGGGAAGAAGTGGCCACTAACGTGTGGCTCTAATTTTTATTTTTAGTTTTATTTGCTGAGTAGACTTCCACATCATTGCCACATAGATGAAAACCAGCTGAAAAACCACTTGAGGGTGTAAAGTGAACGGTATTGAAAGTTGGAGGGGGTGAAATATCTGGTTTTAAAGTTTTGGGTGTATTTTAGA]

[+] EMBL AK109581             [CCTCCCCCTCCCCTGTTCATTATCTTCTCTCACGGCCGTTGGCGGGCGGCGGCGGCGGCGGCGCAGAGCTACGAGGGCGGTGGCGGCGCGGAGCTGCGAAATCGACGACTACGGCGGCAGCGGCTGCGTGGAGCTGTAAGGGCGGCGGCTGCGGCGGCGGCGTGGAGCTGCGAGGGCAGTGGCGGCGGGGAGCTGGTGCGAGGGCGGCAGCTGCGGCATCGGCGGCGCGGAGCTGCGAAATCGACAGCTACGGCGGCAGCGTAGAGCTGCGAGGGCGGCTGCGGTTGCGTGGAGCTGCGAGGGCGGCGGCTGCGGTGGCGGCGTGGAGCCGCGAGGGCGGTGGCGGCGGGGAGTTGGTGCGAGGGCGGCGACGCTGCGAATCACGAGCTTGTTGCCTCGCTCAGAAGTGGCCGACCTCGCCGGAGCCATACGCGCGGGGAGGAGTCATCCCTATGCGCTCGCGCCGCCACCGCTTGGTCGAGGACGAGGTCGAGCTCAAGCTCTACATCCGCCGCCGCCTCGTCGAGCTTGAGTTCCTCATCCCCAAGCAGCTCGAGTTCCACCGGCGAGCTCGAACATGGAGAAGATGGAGTTATGGAGCTCCTGGAGCCGGCAGAAGAGGTAGACCTTTGAGCTCGTGCTCGCCGGCGGTCGGCACGGAAGGGAAGGCTGGGGATGTGCTTGAGCTCCGTCGCCGCAACGAGTCCCCTGCTCCACGGCCACCGATCTCCTGCTCAGCTCCACCGCTGCTCTCTGTCTGGGAGGAAGAAGGATAGAGAAAGAAAGGGAAGAGGAGATGGGGGAAGAAGTGGCCACTAACGTGTGGCTCTAATTTTTATTTTTAGTTTTATTTGCTGAGTAGACTTCCACATCATTGCCACATAGATGAAAACCAGCTGAAAAACCACTTGAGGGTGTAAAGTGAACGGTATTGAAAGTTGGAGGGGGTGAAATATCTGGTTTTAAAGTTTTGGGTGTATTTTAGA]
[-] EMBL CB663615             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            agaCTTGAGTTCCTCATCCCCAAGCAGCTCGAGTTCCACCGGCGAGCTCGAACATGGAGAAGATGGAGTTATGGAGCTCCTGGAGCCGGCAGAAGAGGTAGACCTTTGAGCTCGTGCTCGCCGGCGGTCGGCACGGAAGGGAAGGCTGGGGATGTGCTTGAGCTCCGTCGCCGCAACGAGTCCCCTGCTCCACGGCCACCGATCTCCTGCTCAGCTCCACCGCTGCTCTCTGTCTGGGAGGAAGAAGGATAGAGAAAGAAAGGGAAGAGGAGATGGGGGAAGAAGTGGCCACTAACGTGTGGCTCTAATTTTTATTTTTAGTTTTATTTGCTGAGTAGACTTCCACATCATTGCCACATAGATGAAAACCAGCTGAAAAACCACTTGAGGGTGTAAAGTGAACGGTATTGAAAGTTGGAGGGGGTGAAATA                               ]




>consensus_5997#0
CCTCCCCCTCCCCTGTTCATTATCTTCTCTCACGGCCGTTGGCGGGCGGCGGCGGCGGCG
GCGCAGAGCTACGAGGGCGGTGGCGGCGCGGAGCTGCGAAATCGACGACTACGGCGGCAG
CGGCTGCGTGGAGCTGTAAGGGCGGCGGCTGCGGCGGCGGCGTGGAGCTGCGAGGGCAGT
GGCGGCGGGGAGCTGGTGCGAGGGCGGCAGCTGCGGCATCGGCGGCGCGGAGCTGCGAAA
TCGACAGCTACGGCGGCAGCGTAGAGCTGCGAGGGCGGCTGCGGTTGCGTGGAGCTGCGA
GGGCGGCGGCTGCGGTGGCGGCGTGGAGCCGCGAGGGCGGTGGCGGCGGGGAGTTGGTGC
GAGGGCGGCGACGCTGCGAATCACGAGCTTGTTGCCTCGCTCAGAAGTGGCCGACCTCGC
CGGAGCCATACGCGCGGGGAGGAGTCATCCCTATGCGCTCGCGCCGCCACCGCTTGGTCG
AGGACGAGGTCGAGCTCAAGCTCTACATCCGCCGCCGCCTCGTCGAGCTTGAGTTCCTCA
TCCCCAAGCAGCTCGAGTTCCACCGGCGAGCTCGAACATGGAGAAGATGGAGTTATGGAG
CTCCTGGAGCCGGCAGAAGAGGTAGACCTTTGAGCTCGTGCTCGCCGGCGGTCGGCACGG
AAGGGAAGGCTGGGGATGTGCTTGAGCTCCGTCGCCGCAACGAGTCCCCTGCTCCACGGC
CACCGATCTCCTGCTCAGCTCCACCGCTGCTCTCTGTCTGGGAGGAAGAAGGATAGAGAA
AGAAAGGGAAGAGGAGATGGGGGAAGAAGTGGCCACTAACGTGTGGCTCTAATTTTTATT
TTTAGTTTTATTTGCTGAGTAGACTTCCACATCATTGCCACATAGATGAAAACCAGCTGA
AAAACCACTTGAGGGTGTAAAGTGAACGGTATTGAAAGTTGGAGGGGGTGAAATATCTGG
TTTTAAAGTTTTGGGTGTATTTTAGA

consensusID : consensus_5997#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 406
fasta sequence

                              [TCTCACGGCCGTTGGCGGGCGGCGGCGGCGGCGGCGCACAGCTACGAGGGCGGTGGCGGCGCGGAACTGCGAAATCGACGACTACGGCGGCAGCGGCTGCGTGGAGCTGTAAGGGCGGCGGCTGCGGCGGCGGCGTGGAGCTGCGAGGGCAGTGGCGGCGGGGAGCTGGTGCGAGGGCGGCAGCTGCGGCATCGGCGGCGCGGAGCTGCAAAATCGACAGCTACGGCGGCAGCATACAGCTGCGAGGGCGGCTGCGGTTGCATGGAGCTGCTACGGCGGCGGCTGCAGCGGCGGCGAGCACCCGCTAGGGCGGCTACCTCTTCTACCGGCTCCAAGAGCTCCATAACTCCATCTTCTCCATGTTCTAGCTCGCCGGTGGAACTCCAACTGCTTGGGGATGATGAAC]

[+] EMBL CB663614             [TCTCACGGCCGTTGGCGGGCGGCGGCGGCGGCGGCGCACAGCTACGAGGGCGGTGGCGGCGCGGAACTGCGAAATCGACGACTACGGCGGCAGCGGCTGCGTGGAGCTGTAAGGGCGGCGGCTGCGGCGGCGGCGTGGAGCTGCGAGGGCAGTGGCGGCGGGGAGCTGGTGCGAGGGCGGCAGCTGCGGCATCGGCGGCGCGGAGCTGCAAAATCGACAGCTACGGCGGCAGCATACAGCTGCGAGGGCGGCTGCGGTTGCATGGAGCTGCTACGGCGGCGGCTGCAGCGGCGGCGAGCACCCGCTAGGGCGGCTACCTCTTCTACCGGCTCCAAGAGCTCCATAACTCCATCTTCTCCATGTTCTAGCTCGCCGGTGGAACTCCAACTGCTTGGGGATGATGAAC]




>consensus_5997#1
TCTCACGGCCGTTGGCGGGCGGCGGCGGCGGCGGCGCACAGCTACGAGGGCGGTGGCGGC
GCGGAACTGCGAAATCGACGACTACGGCGGCAGCGGCTGCGTGGAGCTGTAAGGGCGGCG
GCTGCGGCGGCGGCGTGGAGCTGCGAGGGCAGTGGCGGCGGGGAGCTGGTGCGAGGGCGG
CAGCTGCGGCATCGGCGGCGCGGAGCTGCAAAATCGACAGCTACGGCGGCAGCATACAGC
TGCGAGGGCGGCTGCGGTTGCATGGAGCTGCTACGGCGGCGGCTGCAGCGGCGGCGAGCA
CCCGCTAGGGCGGCTACCTCTTCTACCGGCTCCAAGAGCTCCATAACTCCATCTTCTCCA
TGTTCTAGCTCGCCGGTGGAACTCCAACTGCTTGGGGATGATGAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5997#0      CCTCCCCCTCCCCTGTTCATTATCTTCTCTCACGGCCGTTGGCGGGCGGCGGCGGCGGCG 60
consensus_5997#1      ---------------------------TCTCACGGCCGTTGGCGGGCGGCGGCGGCGGCG 33
                                                 *********************************

consensus_5997#0      GCGCAGAGCTACGAGGGCGGTGGCGGCGCGGAGCTGCGAAATCGACGACTACGGCGGCAG 120
consensus_5997#1      GCGCACAGCTACGAGGGCGGTGGCGGCGCGGAACTGCGAAATCGACGACTACGGCGGCAG 93
                      ***** ************************** ***************************

consensus_5997#0      CGGCTGCGTGGAGCTGTAAGGGCGGCGGCTGCGGCGGCGGCGTGGAGCTGCGAGGGCAGT 180
consensus_5997#1      CGGCTGCGTGGAGCTGTAAGGGCGGCGGCTGCGGCGGCGGCGTGGAGCTGCGAGGGCAGT 153
                      ************************************************************

consensus_5997#0      GGCGGCGGGGAGCTGGTGCGAGGGCGGCAGCTGCGGCATCGGCGGCGCGGAGCTGCGAAA 240
consensus_5997#1      GGCGGCGGGGAGCTGGTGCGAGGGCGGCAGCTGCGGCATCGGCGGCGCGGAGCTGCAAAA 213
                      ******************************************************** ***

consensus_5997#0      TCGACAGCTACGGCGGCAGCGTAGAGCTGCGAGGGCGGCTGCGGTTGCGTGGAGCTGCGA 300
consensus_5997#1      TCGACAGCTACGGCGGCAGCATACAGCTGCGAGGGCGGCTGCGGTTGCATGGAGCTGCTA 273
                      ******************** ** ************************ ********* *

consensus_5997#0      GGGCGGCGGCTGCGGTGGCGGCGTGGAGCCGCGAGGGCGGTGGCGGCGGGGAGTTGGTGC 360
consensus_5997#1      CGGCGGCGGCTGCAGCGGCGGCGAGCACCCGCTAGGGCGGCTACCTCTTCTACCGGCTCC 333
                       ************ * ******* * * **** *******   *  *    *   * * *

consensus_5997#0      GAGGGCGGCGACGCTGCGAATCACGAGCTTGTTGCCTCGCTCAGAAGTGGCCGACCTCGC 420
consensus_5997#1      AAGAGCTCCATAACTCCATCTTCTCCATGTTCTAGCTCGCCGGTGGAACTCCAACTGCTT 393
                       ** **  *    ** *   *        *  *  *****          ** **  *  

consensus_5997#0      CGGAGCCATACGCGCGGGGAGGAGTCATCCCTATGCGCTCGCGCCGCCACCGCTTGGTCG 480
consensus_5997#1      GGGGATGATGAAC----------------------------------------------- 406
                       **    **   *                                               

consensus_5997#0      AGGACGAGGTCGAGCTCAAGCTCTACATCCGCCGCCGCCTCGTCGAGCTTGAGTTCCTCA 540
consensus_5997#1      ------------------------------------------------------------
                                                                                  

consensus_5997#0      TCCCCAAGCAGCTCGAGTTCCACCGGCGAGCTCGAACATGGAGAAGATGGAGTTATGGAG 600
consensus_5997#1      ------------------------------------------------------------
                                                                                  

consensus_5997#0      CTCCTGGAGCCGGCAGAAGAGGTAGACCTTTGAGCTCGTGCTCGCCGGCGGTCGGCACGG 660
consensus_5997#1      ------------------------------------------------------------
                                                                                  

consensus_5997#0      AAGGGAAGGCTGGGGATGTGCTTGAGCTCCGTCGCCGCAACGAGTCCCCTGCTCCACGGC 720
consensus_5997#1      ------------------------------------------------------------
                                                                                  

consensus_5997#0      CACCGATCTCCTGCTCAGCTCCACCGCTGCTCTCTGTCTGGGAGGAAGAAGGATAGAGAA 780
consensus_5997#1      ------------------------------------------------------------
                                                                                  

consensus_5997#0      AGAAAGGGAAGAGGAGATGGGGGAAGAAGTGGCCACTAACGTGTGGCTCTAATTTTTATT 840
consensus_5997#1      ------------------------------------------------------------
                                                                                  

consensus_5997#0      TTTAGTTTTATTTGCTGAGTAGACTTCCACATCATTGCCACATAGATGAAAACCAGCTGA 900
consensus_5997#1      ------------------------------------------------------------
                                                                                  

consensus_5997#0      AAAACCACTTGAGGGTGTAAAGTGAACGGTATTGAAAGTTGGAGGGGGTGAAATATCTGG 960
consensus_5997#1      ------------------------------------------------------------
                                                                                  

consensus_5997#0      TTTTAAAGTTTTGGGTGTATTTTAGA 986
consensus_5997#1      --------------------------