These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence [TTTTTTTTTTTTTGACCAGAAATGAACACTCATTAAACAGGGACTCATTTGATCACTTTTATCTACCTATCAAGCCATGACAAATAATAAGGAGCTTAGGATGGATCAATGCAAATGTTCCCTCTCCTCACAAGACAACAGATTATGATGACCTACATATTCTTCACATCAAACCTAGCTTCAGCAGCTGCTATAACTACAACAAGCTCCATCAGTTCAGGACTGCTTCTCCTTGGACCCACCACGTCTGCAGCGGTGGAACCAGCTCGCACTCGGTGCCCCTTGACTTGAACTCTAGGGACGATCTGCATCTCCCTGGCCAGCCTTTCTACTTGAAGTCTGAACTGCAGGAGGAGGAGGCTTCCGGAACCTCTCTGAGGCACCCCCTCGGAGATGAAAATAAGGGCCCTTGCATTGCAGGCCCATATATAACATTTGCGAACACGGAAAGAAAAGCCATTGGTAACATTTCACTAGGCTTTGAAACACCTGCACCAAGCAAGTTTCTGACTTTAAAACACTCCATGAACGGACCGTCCCGCGGTTTCCATTAGGCTTGACCCTTCTTCTGGCATTAGAGTTATTTGACAGGACTTTCGCTTGAAGCGAGTTTTACTTCAAACAGTGACGACAATATGCTCGCTTGATTGTAATTTGGGCGAGGAGCTT] [+] EMBL CA761537 [TTTTTTTTTTTTTGACCAGAAATGAACACTCATTAAACAGGGACTCATTTGATCACTTTTATCTACCTATCAAGCCATGACAAATAATAAGGAGCTTAGGATGGATCAATGCAAATGTTCCCTCTCCTCACAAGACAACAGATTATGATGACCTACATATTCTTCACATCAAACCTAGCTTCAGCAGCTGCTATAACTACAACAAGCTCCATCAGTTCAGGACTGCTTCTCCTTGGACCCACCACGTCTGCAGCGGTGGAACCAGCTCGCACTCGGTGCCCCTTGACTTGAACTCTAGGGACGATCTGCATCTCCCTGGCCAGCCTTTCTACTTGAAGTCTGAACTGCAGGAGGAGGAGGCTTCCGGAACCTCTCTGAGGCACCCCCTCGGAGATGAAAATAAGGGCCCTTGCATTGCAGGCCCATATATAACATTTGCGAACACGGAAAGAAAAGCCATTGGTAACATTTCACTAGGCTTTGAAACACCTGCACCAAGCAAGTTTCTGACTTTAAAACACTCCATGAACGGACCGTCCCGCGGTTTCCATTAGGCTTGACCCTTCTTCTGGCATTAGAGTTATTTGACAGGACTTTCGCTTGAAGCGAGTTTTACTTCAAACAGTGACGACAATATGCTCGCTTGATTGTAATTTGGGCGAGGAGCTT] consensusID : consensus_6#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 641 fasta sequence [TTTTTTTTTTTTTGACCAGAAATGAAAACCCATCAAACAGGTACTCATTTGAACACTTTCTATCTACCTATCAAGCCATGACAAAAAAGAAGGAGCTTAGGATGGAGCACTGCAAACGTTCCCTCTCCTCACAAGACAGCAGAGTATGATGACCTACGTATTCTTCATATCAAACCTAGCTTCAGAAGCGTGATATAACTACAACAGGCTCCCTCAGCTCAGGACTGGTTCTCCTTGGACCCACCACGTCTGCAGCGGTGGAACCAGATCGCACTCGATGCCCCTTGACTTGAACTCTAGGAACGATCTGCATCTCCCTGGCCAGCCCTTCTACTTGAAGCCTGATCTGCAGGAGGAGGAGGCTTAGGGGGAACTATCTGGGGAACCCCTGGGGAAGATAAGTTAAGGGGCCTCCCGGGGCTAGCCCGTTTAACAAATTGGGTACAGAGAGAAGAAACGCGATGGGTAAGACGGGAGAAAAGGTGCGGAGGGCTGGTAGCTGGACGTTTCGGACGTTTTAGAGGCCCTATAAGCGGACGGTCCGCGCGGGTTCCACGAGGCGTTGGCATTATCTCGGCTTTGGTGCGGGTGCGCCGGGACTTCTCTTTGGCGCGGGTGAGATTGGACCAGGCGCCATAATT] [+] EMBL CA761538 [TTTTTTTTTTTTTGACCAGAAATGAAAACCCATCAAACAGGTACTCATTTGAACACTTTCTATCTACCTATCAAGCCATGACAAAAAAGAAGGAGCTTAGGATGGAGCACTGCAAACGTTCCCTCTCCTCACAAGACAGCAGAGTATGATGACCTACGTATTCTTCATATCAAACCTAGCTTCAGAAGCGTGATATAACTACAACAGGCTCCCTCAGCTCAGGACTGGTTCTCCTTGGACCCACCACGTCTGCAGCGGTGGAACCAGATCGCACTCGATGCCCCTTGACTTGAACTCTAGGAACGATCTGCATCTCCCTGGCCAGCCCTTCTACTTGAAGCCTGATCTGCAGGAGGAGGAGGCTTAGGGGGAACTATCTGGGGAACCCCTGGGGAAGATAAGTTAAGGGGCCTCCCGGGGCTAGCCCGTTTAACAAATTGGGTACAGAGAGAAGAAACGCGATGGGTAAGACGGGAGAAAAGGTGCGGAGGGCTGGTAGCTGGACGTTTCGGACGTTTTAGAGGCCCTATAAGCGGACGGTCCGCGCGGGTTCCACGAGGCGTTGGCATTATCTCGGCTTTGGTGCGGGTGCGCCGGGACTTCTCTTTGGCGCGGGTGAGATTGGACCAGGCGCCATAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6#0 TTTTTTTTTTTTTGACCAGAAATGAACACTCATTAAACAGGGACTCATTTGATCACTTT- 59 consensus_6#1 TTTTTTTTTTTTTGACCAGAAATGAAAACCCATCAAACAGGTACTCATTTGAACACTTTC 60 ************************** ** *** ******* ********** ****** consensus_6#0 TATCTACCTATCAAGCCATGACAAATAATAAGGAGCTTAGGATGGATCAATGCAAATGTT 119 consensus_6#1 TATCTACCTATCAAGCCATGACAAAAAAGAAGGAGCTTAGGATGGAGCACTGCAAACGTT 120 ************************* ** ***************** ** ****** *** consensus_6#0 CCCTCTCCTCACAAGACAACAGATTATGATGACCTACATATTCTTCACATCAAACCTAGC 179 consensus_6#1 CCCTCTCCTCACAAGACAGCAGAGTATGATGACCTACGTATTCTTCATATCAAACCTAGC 180 ****************** **** ************* ********* ************ consensus_6#0 TTCAGCAGC-TGCTATAACTACAACAAGCTCCATCAGTTCAGGACTGCTTCTCCTTGGAC 238 consensus_6#1 TTCAGAAGCGTGATATAACTACAACAGGCTCCCTCAGCTCAGGACTGGTTCTCCTTGGAC 240 ***** *** ** ************* ***** **** ********* ************ consensus_6#0 CCACCACGTCTGCAGCGGTGGAACCAGCTCGCACTCGGTGCCCCTTGACTTGAACTCTAG 298 consensus_6#1 CCACCACGTCTGCAGCGGTGGAACCAGATCGCACTCGATGCCCCTTGACTTGAACTCTAG 300 *************************** ********* ********************** consensus_6#0 GGACGATCTGCATCTCCCTGGCCAGCCTTTCTACTTGAAGTCTGAACTGCAGGAGGAGGA 358 consensus_6#1 GAACGATCTGCATCTCCCTGGCCAGCCCTTCTACTTGAAGCCTGATCTGCAGGAGGAGGA 360 * ************************* ************ **** ************** consensus_6#0 GGCTTCCGGA-ACCTCTCTGAGGCACCCCCTCGGAGATGAAAATAAGGGCCCTTGCATTG 417 consensus_6#1 GGCTTAGGGGGAACTATCTGGGGAACCCCTGGGGAAGATAAGTTAAGGGGCCTCCCGGGG 420 ***** ** * ** **** ** ***** *** ** ****** *** * * consensus_6#0 CAGGCCCATATATAACATTTGCGAACACGGAAAGAAAAGCCATTGGTAACATTTCACTAG 477 consensus_6#1 CTAGCCCGTTTAACAAATTGGGTACAGAGAGAAGAAACGCGATGGGTAAGACGGGAGAAA 480 * **** * ** * *** * * * ****** ** ** ***** * * * consensus_6#0 -GCTTTGAAACACCTGCACCAAGCAAGTTTCTGAC-TTTAAAACACTCCATGAACGGACC 535 consensus_6#1 AGGTGCGGAGGGCTGGTAGCTGG-ACGTTTCGGACGTTTTAGAGGCCCTATAAGCGGACG 539 * * * * * * * * * * ***** *** *** * * * * ** * ***** consensus_6#0 GTCC-CGCGGTTTCCATTAGGCTTGACCCTTCTTCTGGCATTAGAGTTATT-TGACAGGA 593 consensus_6#1 GTCCGCGCGGGTTCCACGAGGCGTTGGCATTATCTCGGCTTTGGTGCGGGTGCGCCGGGA 599 **** ***** ***** **** * * ** * *** ** * * * * * *** consensus_6#0 CTTTCGCTTGAAGCGAGTTTTACTTCAAACAGTGACGACAATATGCTCGCTTGATTGTAA 653 consensus_6#1 CTTCTCTTTGGCGCGGGTGAGA-TTGGACCAGGCGCCATAATT----------------- 641 *** *** *** ** * ** * *** * * *** consensus_6#0 TTTGGGCGAGGAGCTT 669 consensus_6#1 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||