cluster # 60

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Oryza sativa
cluster # 60 cluster # 60 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_60#0 length = 618 sequences # 1

consensus_60#1 length = 248 sequences # 1

consensusID : consensus_60#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 618
fasta sequence

                              [CAACTCAATCGCCCGCGCCTACCGTCGCCCTGCGCCGATCACCTGGCCATCTCGCCGCCGGCCTCCTCCAGTCCTCCTAGTCCTCGCCGGACCCAATGTCTGCGCTCTTCAACTTCCACTCCTTCGTCACCGTCGTGCTGCTGCTGATCTGCACCTGCACCTTCCTCAAGATGCACTTCCCCTCCATCCTCGTCCGACGGACAGGATTTCGTGGTTTCTTTTGGAAGGCTGCTAGGATAGGTGAGCGCCTTAGCCCCTGGGTAGCTATTGGGTGTTCTGTCATGGGCATATCTATTATATTTTATTGAGATCAGAATATATTTTTGTGCTGTCCTGATCTGGGAACAATTTCACCTGTAGATAGGGAAATCCGATGCCTTTTGTGGCTCTGTTTATATCCGTGTTTCTTTCTCCTGTAAGCATGTTATGACTTACGAAATTCACCTAAACTGTTTTCCACTTTCCACTTCAGAGAAGAAGTGTGGGAGCTGGGAATTTTTGAGAGAATTATAGTATGATGATTTGTATTTGTATTTCAGATGTCAGGTTTTGTAACCCTGTAATTGTAGCAAATGTGTGTTTTCATGTTGTGTTTTAACCCTAATGGAATCCTAGTTC]

[+] EMBL AK069297             [CAACTCAATCGCCCGCGCCTACCGTCGCCCTGCGCCGATCACCTGGCCATCTCGCCGCCGGCCTCCTCCAGTCCTCCTAGTCCTCGCCGGACCCAATGTCTGCGCTCTTCAACTTCCACTCCTTCGTCACCGTCGTGCTGCTGCTGATCTGCACCTGCACCTTCCTCAAGATGCACTTCCCCTCCATCCTCGTCCGACGGACAGGATTTCGTGGTTTCTTTTGGAAGGCTGCTAGGATAGGTGAGCGCCTTAGCCCCTGGGTAGCTATTGGGTGTTCTGTCATGGGCATATCTATTATATTTTATTGAGATCAGAATATATTTTTGTGCTGTCCTGATCTGGGAACAATTTCACCTGTAGATAGGGAAATCCGATGCCTTTTGTGGCTCTGTTTATATCCGTGTTTCTTTCTCCTGTAAGCATGTTATGACTTACGAAATTCACCTAAACTGTTTTCCACTTTCCACTTCAGAGAAGAAGTGTGGGAGCTGGGAATTTTTGAGAGAATTATAGTATGATGATTTGTATTTGTATTTCAGATGTCAGGTTTTGTAACCCTGTAATTGTAGCAAATGTGTGTTTTCATGTTGTGTTTTAACCCTAATGGAATCCTAGTTC]




>consensus_60#0
CAACTCAATCGCCCGCGCCTACCGTCGCCCTGCGCCGATCACCTGGCCATCTCGCCGCCG
GCCTCCTCCAGTCCTCCTAGTCCTCGCCGGACCCAATGTCTGCGCTCTTCAACTTCCACT
CCTTCGTCACCGTCGTGCTGCTGCTGATCTGCACCTGCACCTTCCTCAAGATGCACTTCC
CCTCCATCCTCGTCCGACGGACAGGATTTCGTGGTTTCTTTTGGAAGGCTGCTAGGATAG
GTGAGCGCCTTAGCCCCTGGGTAGCTATTGGGTGTTCTGTCATGGGCATATCTATTATAT
TTTATTGAGATCAGAATATATTTTTGTGCTGTCCTGATCTGGGAACAATTTCACCTGTAG
ATAGGGAAATCCGATGCCTTTTGTGGCTCTGTTTATATCCGTGTTTCTTTCTCCTGTAAG
CATGTTATGACTTACGAAATTCACCTAAACTGTTTTCCACTTTCCACTTCAGAGAAGAAG
TGTGGGAGCTGGGAATTTTTGAGAGAATTATAGTATGATGATTTGTATTTGTATTTCAGA
TGTCAGGTTTTGTAACCCTGTAATTGTAGCAAATGTGTGTTTTCATGTTGTGTTTTAACC
CTAATGGAATCCTAGTTC

consensusID : consensus_60#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 248
fasta sequence

                              [AGGGCCGAGCCAAGGGGTAGCTATTGGGTGTTCTGTCATGGGCATATCTATTATATTTTATTGAGATCAGAATATATTTTTGTGCTGTCCTGATCTGGGAACAATTTCCCCTGTAGATAGGGAAATCCGATGCCTTTTGTGGCTCTGTTTATATCCCGGTTTCTTTCTCCTGTAAGCATGTTATGACTTTTACGAAATTCCCCTAAACTGTTTTCCCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA761326             [AGGGCCGAGCCAAGGGGTAGCTATTGGGTGTTCTGTCATGGGCATATCTATTATATTTTATTGAGATCAGAATATATTTTTGTGCTGTCCTGATCTGGGAACAATTTCCCCTGTAGATAGGGAAATCCGATGCCTTTTGTGGCTCTGTTTATATCCCGGTTTCTTTCTCCTGTAAGCATGTTATGACTTTTACGAAATTCCCCTAAACTGTTTTCCCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_60#1
AGGGCCGAGCCAAGGGGTAGCTATTGGGTGTTCTGTCATGGGCATATCTATTATATTTTA
TTGAGATCAGAATATATTTTTGTGCTGTCCTGATCTGGGAACAATTTCCCCTGTAGATAG
GGAAATCCGATGCCTTTTGTGGCTCTGTTTATATCCCGGTTTCTTTCTCCTGTAAGCATG
TTATGACTTTTACGAAATTCCCCTAAACTGTTTTCCCCTTAAAAAAAAAAAAAAAAAAAA
AAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_60#0      CAACTCAATCGCCCGCGCCTACCGTCGCCCTGCGCCGATCACCTGGCCATCTCGCCGCCG 60
consensus_60#1      ------------------------------------------------------------
                                                                                

consensus_60#0      GCCTCCTCCAGTCCTCCTAGTCCTCGCCGGACCCAATGTCTGCGCTCTTCAACTTCCACT 120
consensus_60#1      ------------------------------------------------------------
                                                                                

consensus_60#0      CCTTCGTCACCGTCGTGCTGCTGCTGATCTGCACCTGCACCTTCCTCAAGATGCACTTCC 180
consensus_60#1      ------------------------------------------------------------
                                                                                

consensus_60#0      CCTCCATCCTCGTCCGACGGACAGGATTTCGTGGTTTCTTTTGGAAGGCTGCTAGGATAG 240
consensus_60#1      ------------------------------------------------------------
                                                                                

consensus_60#0      GTGAGCGCCTTAGCCCCTGGGTAGCTATTGGGTGTTCTGTCATGGGCATATCTATTATAT 300
consensus_60#1      ---AGGGCCG-AGCCAAGGGGTAGCTATTGGGTGTTCTGTCATGGGCATATCTATTATAT 56
                       ** ***  ****   ******************************************

consensus_60#0      TTTATTGAGATCAGAATATATTTTTGTGCTGTCCTGATCTGGGAACAATTTCACCTGTAG 360
consensus_60#1      TTTATTGAGATCAGAATATATTTTTGTGCTGTCCTGATCTGGGAACAATTTCCCCTGTAG 116
                    **************************************************** *******

consensus_60#0      ATAGGGAAATCCGATGCCTTTTGTGGCTCTGTTTATATCCGTGTTTCTTTCTCCTGTAAG 420
consensus_60#1      ATAGGGAAATCCGATGCCTTTTGTGGCTCTGTTTATATCCCGGTTTCTTTCTCCTGTAAG 176
                    ****************************************  ******************

consensus_60#0      CATGTTATGACTT--ACGAAATTCACCTAAACTGTTTTCCACTTTCCACTTCAGAGAAGA 478
consensus_60#1      CATGTTATGACTTTTACGAAATTCCCCTAAACTGTTTTCCCCTTAAAAAAAAAAAAAAAA 236
                    *************  ********* *************** ***   *    * * ** *

consensus_60#0      AGTGTGGGAGCTGGGAATTTTTGAGAGAATTATAGTATGATGATTTGTATTTGTATTTCA 538
consensus_60#1      AAAAAAAAAAAA------------------------------------------------ 248
                    *       *                                                   

consensus_60#0      GATGTCAGGTTTTGTAACCCTGTAATTGTAGCAAATGTGTGTTTTCATGTTGTGTTTTAA 598
consensus_60#1      ------------------------------------------------------------
                                                                                

consensus_60#0      CCCTAATGGAATCCTAGTTC 618
consensus_60#1      --------------------