These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_600#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence [GANGGCGTCTTCGAGCGCCGCGCCGAGGTGGCCGACCCGCCCGTCGCCAACGTCGACCGCCTCGTCCTCCTCTTCGCCCTCGACCAGCCCCAGCCCGAGCCCGCTACGCTCACCAGGTTCCTCGTCGACGCCGAGTCCACCGGGATACCTTTCGTGCTCGTCTTCAACAAGGTCGAGCTTGTGGACGACAAGACCATATCATACTGGAGAGATAGGATGAAGAGTTGGGGATACGATCCACTATTTTTAAGTGTTGATCAGAAATCAGGATTATCCGCTCTTGAAGAAACATTGGAAGGACAGACAACTGTAATTGTTGGTCCAAGCGGTGTTGGAAAGTCCAGTCTGATCAATGCTTTGAGAAGCAACCAGAACATCTCAGAAGAAGATCCCATACATAAACTAGTTGAGCAGAATAGTAAATGGTTTGGTGAACAACGGGTCGGTACCGTGTCGAAGAAAAGCGGCAAAGGAAAGCACACAACACGTCATGTTTCATTGCTTCCTATAGCTGGTGGAGGTTTTCTTGCTGATACTCCAGGATTTAACCAGCCTAGCCTGATGAAAGTGACCAAGAAGGGTCTTGCAGAAACATTTCCAGAGATAAGAAAGATGCTTGCCAGAGAATGAGCCCTCAAAAATG] [+] EMBL AU093920 [GANGGCGTCTTCGAGCGCCGCGCCGAGGTGGCCGACCCGCCCGTCGCCAACGTCGACCGCCTCGTCCTCCTCTTCGCCCTCGACCAGCCCCAGCCCGAGCCCGCTACGCTCACCAGGTTCCTCGTCGACGCCGAGTCCACCGGGATACCTTTCGTGCTCGTCTTCAACAAGGTCGAGCTTGTGGACGACAAGACCATATCATACTGGAGAGATAGGATGAAGAGTTGGGGATACGATCCACTATTTTTAAGTGTTGATCAGAAATCAGGATTATCCGCTCTTGAAGAAACATTGGAAGGACAGACAACTGTAATTGTTGGTCCAAGCGGTGTTGGAAAGTCCAGTCTGATCAATGCTTTGAGAAGCAACCAGAACATCTCAGAAGAAGATCCCATACATAAACTAGTTGAGCAGAATAGTAAATGGTTTGGTGAACAACGGGTCGGTACCGTGTCGAAGAAAAGCGGCAAAGGAAAGCACACAACACGTCATGTTTCATTGCTTCCTATAGCTGGTGGAGGTTTTCTTGCTGATACTCCAGGATTTAACCAGCCTAGCCTGATGAAAGTGACCAAGAAGGGTCTTGCAGAAACATTTCCAGAGATAAGAAAGATGCTTGCCAGAGAATGAGCCCTCAAAAATG] consensusID : consensus_600#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence [GANGGCGTCTTCGAGCGCCGCGCCGAGGTGGCCGACCCGCCCGTCGCCAACGTCGACCGCCTCGTCCTCCTCTTCGCCCTCGACCAGCCCCAGCCCGAGCCCGCTACGCTCACCAGGTTCCTCGTCGACGCCGAGTCCACCGGGATACCTTTCGTGCTCGTCTTCAACAAGGTCGAGCTTGTGGACGACAAGGTAGCCAACAATTGCTTCTTCGATTTCAATTGCTTACTAAATTGTTACCTCTTTGTTGCGCTGTATAGTTCATTCTTCATTGCATTGGTGATTGAACTACGGATTATGATGTACTGATGCTCATTTCGTAATTTGCCATGACATCGTCAATATATAAGAGACAAATGAAATGTTTTCCCCCTGAACAGTGGGGAACGTAGGACCAAATTTTAGGGGGTTGCCAATGGAACGAGGTAAACTAATATAAGTATACATGGGAATATATAGTACTTCCTCCGTTTCATATTATAAGACTTTCTAGCATTGTCCACATTTATATATATGTTAATGAATCTTATAACCTGAAACAGAGGTAGTAGTTGNTAAAAAAATTAGAGNACCAAATTATGTTTTCATTGGNTACCTTTCCTNCTCTCTAGCAAGCATAA] [+] EMBL AU075606 [GANGGCGTCTTCGAGCGCCGCGCCGAGGTGGCCGACCCGCCCGTCGCCAACGTCGACCGCCTCGTCCTCCTCTTCGCCCTCGACCAGCCCCAGCCCGAGCCCGCTACGCTCACCAGGTTCCTCGTCGACGCCGAGTCCACCGGGATACCTTTCGTGCTCGTCTTCAACAAGGTCGAGCTTGTGGACGACAAGGTAGCCAACAATTGCTTCTTCGATTTCAATTGCTTACTAAATTGTTACCTCTTTGTTGCGCTGTATAGTTCATTCTTCATTGCATTGGTGATTGAACTACGGATTATGATGTACTGATGCTCATTTCGTAATTTGCCATGACATCGTCAATATATAAGAGACAAATGAAATGTTTTCCCCCTGAACAGTGGGGAACGTAGGACCAAATTTTAGGGGGTTGCCAATGGAACGAGGTAAACTAATATAAGTATACATGGGAATATATAGTACTTCCTCCGTTTCATATTATAAGACTTTCTAGCATTGTCCACATTTATATATATGTTAATGAATCTTATAACCTGAAACAGAGGTAGTAGTTGNTAAAAAAATTAGAGNACCAAATTATGTTTTCATTGGNTACCTTTCCTNCTCTCTAGCAAGCATAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_600#0 GANGGCGTCTTCGAGCGCCGCGCCGAGGTGGCCGACCCGCCCGTCGCCAACGTCGACCGC 60 consensus_600#1 GANGGCGTCTTCGAGCGCCGCGCCGAGGTGGCCGACCCGCCCGTCGCCAACGTCGACCGC 60 ************************************************************ consensus_600#0 CTCGTCCTCCTCTTCGCCCTCGACCAGCCCCAGCCCGAGCCCGCTACGCTCACCAGGTTC 120 consensus_600#1 CTCGTCCTCCTCTTCGCCCTCGACCAGCCCCAGCCCGAGCCCGCTACGCTCACCAGGTTC 120 ************************************************************ consensus_600#0 CTCGTCGACGCCGAGTCCACCGGGATACCTTTCGTGCTCGTCTTCAACAAGGTCGAGCTT 180 consensus_600#1 CTCGTCGACGCCGAGTCCACCGGGATACCTTTCGTGCTCGTCTTCAACAAGGTCGAGCTT 180 ************************************************************ consensus_600#0 GTGGACGACAAGACCATATCATACTGGAGAGATAGGATGAAGAGTTGGGGATACGATCCA 240 consensus_600#1 GTGGACGACAAGGTAGCCAACAATTGCTTCTTCGATTTCAATTGCTTACTAAATTGTT-A 239 ************ * ** * ** * * * * * * consensus_600#0 CTATTTTTAAGTGTTGATCAGAAATCAGGATTATCCGCTCTTGAAGAAACATTGGAAGGA 300 consensus_600#1 CCTCTTTGTTGCGCTGTATAGT--------TCATTCTTCATTGCATTGGTGATTGAACTA 291 * *** * * ** ** * ** * *** * * *** * consensus_600#0 CAGACAACTGTA-ATTGTTGGTCCAAGCGGTGTTGGAAAGTCCAGTCTGATCAATGCTTT 359 consensus_600#1 CGGATTATGATGTACTGATGCTCATTTCGTAATTTGCCA---TGACATCGTCAATA-TAT 347 * ** * * * ** ** ** ** ** * * * ***** * * consensus_600#0 GAGAAGCAACCAGAACATCTCAGAAGAAGATCCCATACATAAACTAGTTGAGCAGAATAG 419 consensus_600#1 AAGAGACAAATGAAATGTTTTCCCCCTGAA---CAGTGGGGAAC--GTAGGACCAAATTT 402 *** *** ** * * * ** *** ** * * *** consensus_600#0 TAAATGGTTTGGTGAACAACGGGTCGGTACCGTGTCGAAGAAAAGCGGCAAAGGAAAGCA 479 consensus_600#1 TAGGGGGTTGCCAATGGAACGAGGTAA-ACTAATATAAGTATACATGGGAATATATAGTA 461 ** **** **** * ** * * * ** ** * ** * consensus_600#0 CACAACACGTCATGTTTCATTGCTTCCTATAGCTGGTGGAGGTTTTCTTGCTGATACTCC 539 consensus_600#1 CTTCCTCCGTTTCATATTATAAGACTTTCTAGC-ATTGTCCACATTTATATATATGTTAA 520 * *** * * ** * **** ** ** * ** * consensus_600#0 AGGATTTAACCAGCCTAGCCTGATGAAAGTGACCAAGAAGGGTCTTGCAGAAACATTTCC 599 consensus_600#1 TGAATCTTATAACCTGAAACAGA-GGTAGTAGTTGNTAAAAAAATTAGAGNACCAAATTA 579 * ** * * * * * * ** * *** ** ** ** * ** * consensus_600#0 AGAGATAAGAAAGATGCTTGCCAGAGAATGAGCCCTCAAAAATG 643 consensus_600#1 TGTTTTCATTGGNTACCTTTCCTNCTCTCTAGCAAGCATAA--- 620 * * * *** ** *** ** ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||