cluster # 6003

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Oryza sativa
cluster # 6003 cluster # 6003 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6003#0 length = 607 sequences # 1

consensus_6003#1 length = 565 sequences # 2

consensusID : consensus_6003#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 607
fasta sequence

                              [TGGACTGAAGGAGTAGAAAAGACGGGTGCGGTCTAGCTCTACTCCTTCGTTCCCGAGAGAAAAAAAAAGAACTCCCCTCCCTCGGCCCCTCTTCCCCCTCGTTCCCAGCGGCTCGCCACCGGCGACGGCCGGAAGAGGGGTCTAGCCTCCTCCTAGCCTAGTGTGAGTCGGGTCCCTTCCGTTTTCTGGTCTTTCCCGTAGTTCGGGCTCTGTCCCGTTTAGCACAAGGTCGCCGGTGTCGTCCCCATGCATGGTAGCCCGAGGTGGTGGTGGGTTCTGGAGGCGGTGAATCTGGCTGCTTCAACTTCCAGGCTTGGCAAATGGACGAGGTGAGTGGTTGCCGGTGCTCTCTTCTGATGAATCTGGCATCAGCGATCCCTTCGCTTGTCGGCTTCGTTGGTGGGGAGCCGCAACACCTGCACACCCATTCGGTGGTCCCAGGAGCGGCGGCCATTGGGCACGACAGATCCAACAAGGCAGGAGCTTAATTCAATGCCTAGNGTGTTGATCTCCCTGGGGGATTCATGAAGCACCCCAAGGTCTCCTTCCCAACCACCTCATGTTTGATCCTGATAATATTACATACAATGGATCGCCTCCATCCTAG]

[+] EMBL CF292398             [TGGACTGAAGGAGTAGAAAAGACGGGTGCGGTCTAGCTCTACTCCTTCGTTCCCGAGAGAAAAAAAAAGAACTCCCCTCCCTCGGCCCCTCTTCCCCCTCGTTCCCAGCGGCTCGCCACCGGCGACGGCCGGAAGAGGGGTCTAGCCTCCTCCTAGCCTAGTGTGAGTCGGGTCCCTTCCGTTTTCTGGTCTTTCCCGTAGTTCGGGCTCTGTCCCGTTTAGCACAAGGTCGCCGGTGTCGTCCCCATGCATGGTAGCCCGAGGTGGTGGTGGGTTCTGGAGGCGGTGAATCTGGCTGCTTCAACTTCCAGGCTTGGCAAATGGACGAGGTGAGTGGTTGCCGGTGCTCTCTTCTGATGAATCTGGCATCAGCGATCCCTTCGCTTGTCGGCTTCGTTGGTGGGGAGCCGCAACACCTGCACACCCATTCGGTGGTCCCAGGAGCGGCGGCCATTGGGCACGACAGATCCAACAAGGCAGGAGCTTAATTCAATGCCTAGNGTGTTGATCTCCCTGGGGGATTCATGAAGCACCCCAAGGTCTCCTTCCCAACCACCTCATGTTTGATCCTGATAATATTACATACAATGGATCGCCTCCATCCTAG]




>consensus_6003#0
TGGACTGAAGGAGTAGAAAAGACGGGTGCGGTCTAGCTCTACTCCTTCGTTCCCGAGAGA
AAAAAAAAGAACTCCCCTCCCTCGGCCCCTCTTCCCCCTCGTTCCCAGCGGCTCGCCACC
GGCGACGGCCGGAAGAGGGGTCTAGCCTCCTCCTAGCCTAGTGTGAGTCGGGTCCCTTCC
GTTTTCTGGTCTTTCCCGTAGTTCGGGCTCTGTCCCGTTTAGCACAAGGTCGCCGGTGTC
GTCCCCATGCATGGTAGCCCGAGGTGGTGGTGGGTTCTGGAGGCGGTGAATCTGGCTGCT
TCAACTTCCAGGCTTGGCAAATGGACGAGGTGAGTGGTTGCCGGTGCTCTCTTCTGATGA
ATCTGGCATCAGCGATCCCTTCGCTTGTCGGCTTCGTTGGTGGGGAGCCGCAACACCTGC
ACACCCATTCGGTGGTCCCAGGAGCGGCGGCCATTGGGCACGACAGATCCAACAAGGCAG
GAGCTTAATTCAATGCCTAGNGTGTTGATCTCCCTGGGGGATTCATGAAGCACCCCAAGG
TCTCCTTCCCAACCACCTCATGTTTGATCCTGATAATATTACATACAATGGATCGCCTCC
ATCCTAG

consensusID : consensus_6003#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 565
fasta sequence

                              [TTTTTTAATGAAGAAAGTAATTTTATTGGTGCACAAGACATCAA-GGAGGAAACAATATCATAATATCGTGAAGACGGGTGCGGTCTAGCTCTACTCCTTCGTTCCCGAGAGAAAAAAAAAGAACTCCCCTCCCTCGGCCCCTCTTCCCCCTCGTTCCCAGCGGCTCGCCACCGGCGACGGCCGGAAGAGGGGTCTAGCCTCCTCCTAGCCTAGTGTGAGTCGGGTCCCTTCCGTTTTCTGGTCTTTCCCGTAGTTCGGGCTCTGTCCCGTTTAGCACAAGGTCGCCGGTGCCGTCCCCATGCATGGTAGCCCGAGGTGGTGCTGGGTTCTGGAGGCGGTGAATCTGGCTGCTTCAACTTCCAGGCTTGGCAAATGGACGAGGTGAGTGGTTGCCGGTGCTCTCTTCTGAT-GAATCTGGCATCAGCGTTCCCTTCGCTTGTCGGCTTCGTTGGTGGGGAGCCGCAACACCTGC-ACACCCATTCGGTGGTCCCAGAGAGCGGCGGCCATTGGGCACGGCAGATCCAACAAGGCAGGAGCTTAATTCAATGCCTAGGTGTTGATCTCC]

[-] EMBL BM419080             [TTTTTTAATGAAGAAAGTAATTTTATTGGTGCACAAGACATCAA GGAGGAAACAATATCATAATATCGTGAAGACGGGTGCGGTCTAGCTCTACTCCTTCGTTCCCGAGAGAAAAAAAAAGAACTCCCCTCCCTCGGCCCCTCTTCCCCCTCGTTCCCAGCGGCTCGCCACCGGCGACGGCCGGAAGAGGGGTCTAGCCTCCTCCTAGCCTAGTGTGAGTCGGGTCCCTTCCGTTTTCTGGTCTTTCCCGTAGTTCGGGCTCTGTCCCGTTTAGCACAAGGTCGCCGGTGCCGTCCCCATGCATGGTAGCCCGAGGTGGTGCTGGGTTCTGGAGGCGGTGAATCTGGCTGCTTCAACTTCCAGGCTTGGCAAATGGACGAGGTGAGTGGTTGCCGGTGCTCTCTTCTGAT GAATCTGGCATCAGCGTTCCCTTCGCTTGTCGGCTTCGTTGGTGGGGAGCCGCAACACCTGC ACACCCATTCGGTGGTCCCAGAGAGCGGCGGCCATTGGGCACGGCAGATCCAACAAGGCAGGAGCTTAATTCAATGCCTAGGTGTTGATCTCC]
[-] EMBL BM419516             [TTTTTTAATGAAGAAAGTAATTTTATTGGTGCACAAGACATCAAGGGAGGAAACAATATCATAATATCGTGAAGACGGGTGCGGTCTAGCTCTACTCCTTCGTTCCCGAGAGAAAAAAAAAGAACTCCCCTCCCTCGGCCCCTCTTCCCCCTCGTTCCCAGCGGCTCGCCACCGGCGACGGCCGGAAGAGGGGTCTAGCCTCCTCCTAGCCTAGTGTGAGTCGGGTCCCTTCCGTTTTCTGGTCTTTCCCGTAGTTCGGGCTCTGTCCCGTTTAGCACAAGGTCGCCGGTGCCGTCCCCATGCATGGTAGCCCGAGGTGGTGCTGGGTTCTGGAGGCGGTGAATCTGGCTGCTTCAACTTCCAGGCTTGGCAAATGGACGAGGTGAGTGGTTGCCGGTGCTCTCTTCTGATAGAATCTGGCATCAGCGTTCCCTTCGCTTGTCGGCTTCGTTGGTGGGGAGCCGCAACACCTGCAACACCCATTCGGTGGTCCCAG GAGCGGCGGCCATTGGGCACGGCAGATCCAACAAGGCAGGAGCTTAATTCAATGCCTAGGT          ]




>consensus_6003#1
TTTTTTAATGAAGAAAGTAATTTTATTGGTGCACAAGACATCAAGGAGGAAACAATATCA
TAATATCGTGAAGACGGGTGCGGTCTAGCTCTACTCCTTCGTTCCCGAGAGAAAAAAAAA
GAACTCCCCTCCCTCGGCCCCTCTTCCCCCTCGTTCCCAGCGGCTCGCCACCGGCGACGG
CCGGAAGAGGGGTCTAGCCTCCTCCTAGCCTAGTGTGAGTCGGGTCCCTTCCGTTTTCTG
GTCTTTCCCGTAGTTCGGGCTCTGTCCCGTTTAGCACAAGGTCGCCGGTGCCGTCCCCAT
GCATGGTAGCCCGAGGTGGTGCTGGGTTCTGGAGGCGGTGAATCTGGCTGCTTCAACTTC
CAGGCTTGGCAAATGGACGAGGTGAGTGGTTGCCGGTGCTCTCTTCTGATGAATCTGGCA
TCAGCGTTCCCTTCGCTTGTCGGCTTCGTTGGTGGGGAGCCGCAACACCTGCACACCCAT
TCGGTGGTCCCAGAGAGCGGCGGCCATTGGGCACGGCAGATCCAACAAGGCAGGAGCTTA
ATTCAATGCCTAGGTGTTGATCTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6003#0      ----------------------------------------------------TGGACTGA 8
consensus_6003#1      TTTTTTAATGAAGAAAGTAATTTTATTGGTGCACAAGACATCAAGGAGGAAACAATATCA 60
                                                                               * *

consensus_6003#0      AGGAGTAGAAAAGACGGGTGCGGTCTAGCTCTACTCCTTCGTTCCCGAGAGAAAAAAAAA 68
consensus_6003#1      TAATATCGTGAAGACGGGTGCGGTCTAGCTCTACTCCTTCGTTCCCGAGAGAAAAAAAAA 120
                           * *  **************************************************

consensus_6003#0      GAACTCCCCTCCCTCGGCCCCTCTTCCCCCTCGTTCCCAGCGGCTCGCCACCGGCGACGG 128
consensus_6003#1      GAACTCCCCTCCCTCGGCCCCTCTTCCCCCTCGTTCCCAGCGGCTCGCCACCGGCGACGG 180
                      ************************************************************

consensus_6003#0      CCGGAAGAGGGGTCTAGCCTCCTCCTAGCCTAGTGTGAGTCGGGTCCCTTCCGTTTTCTG 188
consensus_6003#1      CCGGAAGAGGGGTCTAGCCTCCTCCTAGCCTAGTGTGAGTCGGGTCCCTTCCGTTTTCTG 240
                      ************************************************************

consensus_6003#0      GTCTTTCCCGTAGTTCGGGCTCTGTCCCGTTTAGCACAAGGTCGCCGGTGTCGTCCCCAT 248
consensus_6003#1      GTCTTTCCCGTAGTTCGGGCTCTGTCCCGTTTAGCACAAGGTCGCCGGTGCCGTCCCCAT 300
                      ************************************************** *********

consensus_6003#0      GCATGGTAGCCCGAGGTGGTGGTGGGTTCTGGAGGCGGTGAATCTGGCTGCTTCAACTTC 308
consensus_6003#1      GCATGGTAGCCCGAGGTGGTGCTGGGTTCTGGAGGCGGTGAATCTGGCTGCTTCAACTTC 360
                      ********************* **************************************

consensus_6003#0      CAGGCTTGGCAAATGGACGAGGTGAGTGGTTGCCGGTGCTCTCTTCTGATGAATCTGGCA 368
consensus_6003#1      CAGGCTTGGCAAATGGACGAGGTGAGTGGTTGCCGGTGCTCTCTTCTGATGAATCTGGCA 420
                      ************************************************************

consensus_6003#0      TCAGCGATCCCTTCGCTTGTCGGCTTCGTTGGTGGGGAGCCGCAACACCTGCACACCCAT 428
consensus_6003#1      TCAGCGTTCCCTTCGCTTGTCGGCTTCGTTGGTGGGGAGCCGCAACACCTGCACACCCAT 480
                      ****** *****************************************************

consensus_6003#0      TCGGTGGTCCCAG-GAGCGGCGGCCATTGGGCACGACAGATCCAACAAGGCAGGAGCTTA 487
consensus_6003#1      TCGGTGGTCCCAGAGAGCGGCGGCCATTGGGCACGGCAGATCCAACAAGGCAGGAGCTTA 540
                      ************* ********************* ************************

consensus_6003#0      ATTCAATGCCTAGNGTGTTGATCTCCCTGGGGGATTCATGAAGCACCCCAAGGTCTCCTT 547
consensus_6003#1      ATTCAATGCCTAGG-TGTTGATCTCC---------------------------------- 565
                      *************  ***********                                  

consensus_6003#0      CCCAACCACCTCATGTTTGATCCTGATAATATTACATACAATGGATCGCCTCCATCCTAG 607
consensus_6003#1      ------------------------------------------------------------