These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6003#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence [TGGACTGAAGGAGTAGAAAAGACGGGTGCGGTCTAGCTCTACTCCTTCGTTCCCGAGAGAAAAAAAAAGAACTCCCCTCCCTCGGCCCCTCTTCCCCCTCGTTCCCAGCGGCTCGCCACCGGCGACGGCCGGAAGAGGGGTCTAGCCTCCTCCTAGCCTAGTGTGAGTCGGGTCCCTTCCGTTTTCTGGTCTTTCCCGTAGTTCGGGCTCTGTCCCGTTTAGCACAAGGTCGCCGGTGTCGTCCCCATGCATGGTAGCCCGAGGTGGTGGTGGGTTCTGGAGGCGGTGAATCTGGCTGCTTCAACTTCCAGGCTTGGCAAATGGACGAGGTGAGTGGTTGCCGGTGCTCTCTTCTGATGAATCTGGCATCAGCGATCCCTTCGCTTGTCGGCTTCGTTGGTGGGGAGCCGCAACACCTGCACACCCATTCGGTGGTCCCAGGAGCGGCGGCCATTGGGCACGACAGATCCAACAAGGCAGGAGCTTAATTCAATGCCTAGNGTGTTGATCTCCCTGGGGGATTCATGAAGCACCCCAAGGTCTCCTTCCCAACCACCTCATGTTTGATCCTGATAATATTACATACAATGGATCGCCTCCATCCTAG] [+] EMBL CF292398 [TGGACTGAAGGAGTAGAAAAGACGGGTGCGGTCTAGCTCTACTCCTTCGTTCCCGAGAGAAAAAAAAAGAACTCCCCTCCCTCGGCCCCTCTTCCCCCTCGTTCCCAGCGGCTCGCCACCGGCGACGGCCGGAAGAGGGGTCTAGCCTCCTCCTAGCCTAGTGTGAGTCGGGTCCCTTCCGTTTTCTGGTCTTTCCCGTAGTTCGGGCTCTGTCCCGTTTAGCACAAGGTCGCCGGTGTCGTCCCCATGCATGGTAGCCCGAGGTGGTGGTGGGTTCTGGAGGCGGTGAATCTGGCTGCTTCAACTTCCAGGCTTGGCAAATGGACGAGGTGAGTGGTTGCCGGTGCTCTCTTCTGATGAATCTGGCATCAGCGATCCCTTCGCTTGTCGGCTTCGTTGGTGGGGAGCCGCAACACCTGCACACCCATTCGGTGGTCCCAGGAGCGGCGGCCATTGGGCACGACAGATCCAACAAGGCAGGAGCTTAATTCAATGCCTAGNGTGTTGATCTCCCTGGGGGATTCATGAAGCACCCCAAGGTCTCCTTCCCAACCACCTCATGTTTGATCCTGATAATATTACATACAATGGATCGCCTCCATCCTAG] consensusID : consensus_6003#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 565 fasta sequence [TTTTTTAATGAAGAAAGTAATTTTATTGGTGCACAAGACATCAA-GGAGGAAACAATATCATAATATCGTGAAGACGGGTGCGGTCTAGCTCTACTCCTTCGTTCCCGAGAGAAAAAAAAAGAACTCCCCTCCCTCGGCCCCTCTTCCCCCTCGTTCCCAGCGGCTCGCCACCGGCGACGGCCGGAAGAGGGGTCTAGCCTCCTCCTAGCCTAGTGTGAGTCGGGTCCCTTCCGTTTTCTGGTCTTTCCCGTAGTTCGGGCTCTGTCCCGTTTAGCACAAGGTCGCCGGTGCCGTCCCCATGCATGGTAGCCCGAGGTGGTGCTGGGTTCTGGAGGCGGTGAATCTGGCTGCTTCAACTTCCAGGCTTGGCAAATGGACGAGGTGAGTGGTTGCCGGTGCTCTCTTCTGAT-GAATCTGGCATCAGCGTTCCCTTCGCTTGTCGGCTTCGTTGGTGGGGAGCCGCAACACCTGC-ACACCCATTCGGTGGTCCCAGAGAGCGGCGGCCATTGGGCACGGCAGATCCAACAAGGCAGGAGCTTAATTCAATGCCTAGGTGTTGATCTCC] [-] EMBL BM419080 [TTTTTTAATGAAGAAAGTAATTTTATTGGTGCACAAGACATCAA GGAGGAAACAATATCATAATATCGTGAAGACGGGTGCGGTCTAGCTCTACTCCTTCGTTCCCGAGAGAAAAAAAAAGAACTCCCCTCCCTCGGCCCCTCTTCCCCCTCGTTCCCAGCGGCTCGCCACCGGCGACGGCCGGAAGAGGGGTCTAGCCTCCTCCTAGCCTAGTGTGAGTCGGGTCCCTTCCGTTTTCTGGTCTTTCCCGTAGTTCGGGCTCTGTCCCGTTTAGCACAAGGTCGCCGGTGCCGTCCCCATGCATGGTAGCCCGAGGTGGTGCTGGGTTCTGGAGGCGGTGAATCTGGCTGCTTCAACTTCCAGGCTTGGCAAATGGACGAGGTGAGTGGTTGCCGGTGCTCTCTTCTGAT GAATCTGGCATCAGCGTTCCCTTCGCTTGTCGGCTTCGTTGGTGGGGAGCCGCAACACCTGC ACACCCATTCGGTGGTCCCAGAGAGCGGCGGCCATTGGGCACGGCAGATCCAACAAGGCAGGAGCTTAATTCAATGCCTAGGTGTTGATCTCC] [-] EMBL BM419516 [TTTTTTAATGAAGAAAGTAATTTTATTGGTGCACAAGACATCAAGGGAGGAAACAATATCATAATATCGTGAAGACGGGTGCGGTCTAGCTCTACTCCTTCGTTCCCGAGAGAAAAAAAAAGAACTCCCCTCCCTCGGCCCCTCTTCCCCCTCGTTCCCAGCGGCTCGCCACCGGCGACGGCCGGAAGAGGGGTCTAGCCTCCTCCTAGCCTAGTGTGAGTCGGGTCCCTTCCGTTTTCTGGTCTTTCCCGTAGTTCGGGCTCTGTCCCGTTTAGCACAAGGTCGCCGGTGCCGTCCCCATGCATGGTAGCCCGAGGTGGTGCTGGGTTCTGGAGGCGGTGAATCTGGCTGCTTCAACTTCCAGGCTTGGCAAATGGACGAGGTGAGTGGTTGCCGGTGCTCTCTTCTGATAGAATCTGGCATCAGCGTTCCCTTCGCTTGTCGGCTTCGTTGGTGGGGAGCCGCAACACCTGCAACACCCATTCGGTGGTCCCAG GAGCGGCGGCCATTGGGCACGGCAGATCCAACAAGGCAGGAGCTTAATTCAATGCCTAGGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6003#0 ----------------------------------------------------TGGACTGA 8 consensus_6003#1 TTTTTTAATGAAGAAAGTAATTTTATTGGTGCACAAGACATCAAGGAGGAAACAATATCA 60 * * consensus_6003#0 AGGAGTAGAAAAGACGGGTGCGGTCTAGCTCTACTCCTTCGTTCCCGAGAGAAAAAAAAA 68 consensus_6003#1 TAATATCGTGAAGACGGGTGCGGTCTAGCTCTACTCCTTCGTTCCCGAGAGAAAAAAAAA 120 * * ************************************************** consensus_6003#0 GAACTCCCCTCCCTCGGCCCCTCTTCCCCCTCGTTCCCAGCGGCTCGCCACCGGCGACGG 128 consensus_6003#1 GAACTCCCCTCCCTCGGCCCCTCTTCCCCCTCGTTCCCAGCGGCTCGCCACCGGCGACGG 180 ************************************************************ consensus_6003#0 CCGGAAGAGGGGTCTAGCCTCCTCCTAGCCTAGTGTGAGTCGGGTCCCTTCCGTTTTCTG 188 consensus_6003#1 CCGGAAGAGGGGTCTAGCCTCCTCCTAGCCTAGTGTGAGTCGGGTCCCTTCCGTTTTCTG 240 ************************************************************ consensus_6003#0 GTCTTTCCCGTAGTTCGGGCTCTGTCCCGTTTAGCACAAGGTCGCCGGTGTCGTCCCCAT 248 consensus_6003#1 GTCTTTCCCGTAGTTCGGGCTCTGTCCCGTTTAGCACAAGGTCGCCGGTGCCGTCCCCAT 300 ************************************************** ********* consensus_6003#0 GCATGGTAGCCCGAGGTGGTGGTGGGTTCTGGAGGCGGTGAATCTGGCTGCTTCAACTTC 308 consensus_6003#1 GCATGGTAGCCCGAGGTGGTGCTGGGTTCTGGAGGCGGTGAATCTGGCTGCTTCAACTTC 360 ********************* ************************************** consensus_6003#0 CAGGCTTGGCAAATGGACGAGGTGAGTGGTTGCCGGTGCTCTCTTCTGATGAATCTGGCA 368 consensus_6003#1 CAGGCTTGGCAAATGGACGAGGTGAGTGGTTGCCGGTGCTCTCTTCTGATGAATCTGGCA 420 ************************************************************ consensus_6003#0 TCAGCGATCCCTTCGCTTGTCGGCTTCGTTGGTGGGGAGCCGCAACACCTGCACACCCAT 428 consensus_6003#1 TCAGCGTTCCCTTCGCTTGTCGGCTTCGTTGGTGGGGAGCCGCAACACCTGCACACCCAT 480 ****** ***************************************************** consensus_6003#0 TCGGTGGTCCCAG-GAGCGGCGGCCATTGGGCACGACAGATCCAACAAGGCAGGAGCTTA 487 consensus_6003#1 TCGGTGGTCCCAGAGAGCGGCGGCCATTGGGCACGGCAGATCCAACAAGGCAGGAGCTTA 540 ************* ********************* ************************ consensus_6003#0 ATTCAATGCCTAGNGTGTTGATCTCCCTGGGGGATTCATGAAGCACCCCAAGGTCTCCTT 547 consensus_6003#1 ATTCAATGCCTAGG-TGTTGATCTCC---------------------------------- 565 ************* *********** consensus_6003#0 CCCAACCACCTCATGTTTGATCCTGATAATATTACATACAATGGATCGCCTCCATCCTAG 607 consensus_6003#1 ------------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||