cluster # 6005

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6005 cluster # 6005 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6005#0 length = 765 sequences # 2

consensus_6005#1 length = 387 sequences # 1

consensusID : consensus_6005#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 765
fasta sequence

                              [GCTTTGGTACGCGCAGCACTTCTTCTCATCCCTTCCCCGAACTCACGAACGCACGCCGCCACCACCGCCCACCGTCGTCTCGTCGGAGATGGCCTCCTCCGCCTCATGGCCGGCGTTCGGAGTAAGCCCAGAGGAAGCAGGGAAGGGTAAATGGTACATCGCAACTGCTGCTACCAACCACATGACCAATGACAAGAGCCTCATCTCCGACCTCAAGCCTGTCGCCGATGGCCGTAATATCATTGCTGATGGCAATGGTGCAGGGTTGAAGGTGCAGGGCAGGGGAGCTGTGAACACAGAAACTGTGGTTCTCCCTGCAGAAGTGTGGTATGTGCCGGAGATTGATGAAAACTTGGTTTCTGTTGACCAGCTCAATGAACTTGGCCTCAGTATTTCGATTGGCCGAGGTGTATGCACCGTCACTAGAGTTAGTGATGGATCTGTAGTTGGCAAAGCGCGTAGATCAGGTGGAGTCTATGAGGTGGAATTCCTCAAGGTTCCCCTTAATTAGCACCAGAAATTCCTTGCTGCAGTATCAGTTGGGGTAGTCAGACTCGTATGATGATATTGCCTACTATATGCAATGCTTGTTGGGTTGGAACTTAAGTTGGATCTTTCAGTAGTTAAGGGATCTGGAGTTTTCTCTGAATGTAAAAACTAAAAAGTGAAAGAAGGAGCTGCCTGTGAGCAGAACTGAGGATTTTACCATGTTGGTTTGACCTTGTCTTTTACCACTGTTTTTAAGTTCCTGTAGCCTGTTGAGCT]

[+] EMBL AK108189             [GCTTTGGTACGCGCAGCACTTCTTCTCATCCCTTCCCCGAACTCACGAACGCACGCCGCCACCACCGCCCACCGTCGTCTCGTCGGAGATGGCCTCCTCCGCCTCATGGCCGGCGTTCGGAGTAAGCCCAGAGGAAGCAGGGAAGGGTAAATGGTACATCGCAACTGCTGCTACCAACCACATGACCAATGACAAGAGCCTCATCTCCGACCTCAAGCCTGTCGCCGATGGCCGTAATATCATTGCTGATGGCAATGGTGCAGGGTTGAAGGTGCAGGGCAGGGGAGCTGTGAACACAGAAACTGTGGTTCTCCCTGCAGAAGTGTGGTATGTGCCGGAGATTGATGAAAACTTGGTTTCTGTTGACCAGCTCAATGAACTTGGCCTCAGTATTTCGATTGGCCGAGGTGTATGCACCGTCACTAGAGTTAGTGATGGATCTGTAGTTGGCAAAGCGCGTAGATCAGGTGGAGTCTATGAGGTGGAATTCCTCAAGGTTCCCCTTAATTAGCACCAGAAATTCCTTGCTGCAGTATCAGTTGGGGTAGTCAGACTCGTATGATGATATTGCCTACTATATGCAATGCTTGTTGGGTTGGAACTTAAGTTGGATCTTTCAGTAGTTAAGGGATCTGGAGTTTTCTCTGAATGTAAAAACTAAAAAGTGAAAGAAGGAGCTGCCTGTGAGCAGAACTGAGGATTTTACCATGTTGGTTTGACCTTGTCTTTTACCACTGTTTTTAAGTTCCTGTAGCCTGTTGAGCT]
[+] EMBL BI801253             [                                                                                                                                                                                                                    TCAAGCCTTTCGCCGATGCCCGTAATATCATTGCTGAT GCAATGGT CAGGGTTGAAGGT CAGGGCAGGGGAGCTGTGAACACAGAAACTGTGGTTCTCCCTGCAGAAGTGTGGTATGTGCCGGAGATTGATGAAAACTTGGTTTCTGTTGACCAGCTCAATGAACTTGGCCTCAGTATTTCGATTGGCCGAGGTGTATGCACCGTCACTAGAGTTAGTGATGGATCTGTAGTTGGCAAAGCGCGTAGATCAGGTGGAGTCTATGAGGTGGAATTCCTCAAGGTTCCCCTTAATTAGCACCAGAAATTCCTTGCTGCAGTATCAGTTGGGGTAGTCAGACTCGTATGATGATATTGCCTACTATATGC ATGCTTGTTGGGTTGGAACTTAAGTTGGATCTTTCAGTAGTTAAGGGATCTGGAGTTTTCTCTGAATGTAAAAACTAAAAAGTGAAAGAAGGAGCTGCCTGTGAGCAGAACTGAGGATTTTACCcaaaaa                                                    ]




>consensus_6005#0
GCTTTGGTACGCGCAGCACTTCTTCTCATCCCTTCCCCGAACTCACGAACGCACGCCGCC
ACCACCGCCCACCGTCGTCTCGTCGGAGATGGCCTCCTCCGCCTCATGGCCGGCGTTCGG
AGTAAGCCCAGAGGAAGCAGGGAAGGGTAAATGGTACATCGCAACTGCTGCTACCAACCA
CATGACCAATGACAAGAGCCTCATCTCCGACCTCAAGCCTGTCGCCGATGGCCGTAATAT
CATTGCTGATGGCAATGGTGCAGGGTTGAAGGTGCAGGGCAGGGGAGCTGTGAACACAGA
AACTGTGGTTCTCCCTGCAGAAGTGTGGTATGTGCCGGAGATTGATGAAAACTTGGTTTC
TGTTGACCAGCTCAATGAACTTGGCCTCAGTATTTCGATTGGCCGAGGTGTATGCACCGT
CACTAGAGTTAGTGATGGATCTGTAGTTGGCAAAGCGCGTAGATCAGGTGGAGTCTATGA
GGTGGAATTCCTCAAGGTTCCCCTTAATTAGCACCAGAAATTCCTTGCTGCAGTATCAGT
TGGGGTAGTCAGACTCGTATGATGATATTGCCTACTATATGCAATGCTTGTTGGGTTGGA
ACTTAAGTTGGATCTTTCAGTAGTTAAGGGATCTGGAGTTTTCTCTGAATGTAAAAACTA
AAAAGTGAAAGAAGGAGCTGCCTGTGAGCAGAACTGAGGATTTTACCATGTTGGTTTGAC
CTTGTCTTTTACCACTGTTTTTAAGTTCCTGTAGCCTGTTGAGCT

consensusID : consensus_6005#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 387
fasta sequence

                              [GCCGCTGCAGGGTTGAAGGTGCAGGGCAGGGGAGCTGTGAACACAGAAACTGTGGTTCTCCCTGCAGAAGTGTGGTATGTGCCGGAGATTGATGAAAACTTGGTTTCTGTTGACCAGCTCAATGAACTTGGCCTCAGTATTTCGATTGGCCGAGGTGTATGCACCGTCACTAGAGTTAGTGATGGATCTGTAGTTGGCAAAGCGCGTAGATCAGGTGGAGTCTATGAGGTGGAATTCCTCAGCCTGTGAGCAGAACTGAGGATTTTACCATGTTGGTTTGACCTTGTCTTTTACCACTGTTTTTAAGTTCCTGTAGCCTGTTGAGCTGTTCATATCCATCGACTTGCAATTGCCATTTCAGTTTCAGTGTTCCTGCCCTGCTGATTT]

[+] EMBL AU225680             [GCCGCTGCAGGGTTGAAGGTGCAGGGCAGGGGAGCTGTGAACACAGAAACTGTGGTTCTCCCTGCAGAAGTGTGGTATGTGCCGGAGATTGATGAAAACTTGGTTTCTGTTGACCAGCTCAATGAACTTGGCCTCAGTATTTCGATTGGCCGAGGTGTATGCACCGTCACTAGAGTTAGTGATGGATCTGTAGTTGGCAAAGCGCGTAGATCAGGTGGAGTCTATGAGGTGGAATTCCTCAGCCTGTGAGCAGAACTGAGGATTTTACCATGTTGGTTTGACCTTGTCTTTTACCACTGTTTTTAAGTTCCTGTAGCCTGTTGAGCTGTTCATATCCATCGACTTGCAATTGCCATTTCAGTTTCAGTGTTCCTGCCCTGCTGATTT]




>consensus_6005#1
GCCGCTGCAGGGTTGAAGGTGCAGGGCAGGGGAGCTGTGAACACAGAAACTGTGGTTCTC
CCTGCAGAAGTGTGGTATGTGCCGGAGATTGATGAAAACTTGGTTTCTGTTGACCAGCTC
AATGAACTTGGCCTCAGTATTTCGATTGGCCGAGGTGTATGCACCGTCACTAGAGTTAGT
GATGGATCTGTAGTTGGCAAAGCGCGTAGATCAGGTGGAGTCTATGAGGTGGAATTCCTC
AGCCTGTGAGCAGAACTGAGGATTTTACCATGTTGGTTTGACCTTGTCTTTTACCACTGT
TTTTAAGTTCCTGTAGCCTGTTGAGCTGTTCATATCCATCGACTTGCAATTGCCATTTCA
GTTTCAGTGTTCCTGCCCTGCTGATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6005#0      GCTTTGGTACGCGCAGCACTTCTTCTCATCCCTTCCCCGAACTCACGAACGCACGCCGCC 60
consensus_6005#1      ------------------------------------------------------------
                                                                                  

consensus_6005#0      ACCACCGCCCACCGTCGTCTCGTCGGAGATGGCCTCCTCCGCCTCATGGCCGGCGTTCGG 120
consensus_6005#1      ------------------------------------------------------------
                                                                                  

consensus_6005#0      AGTAAGCCCAGAGGAAGCAGGGAAGGGTAAATGGTACATCGCAACTGCTGCTACCAACCA 180
consensus_6005#1      ------------------------------------------------------------
                                                                                  

consensus_6005#0      CATGACCAATGACAAGAGCCTCATCTCCGACCTCAAGCCTGTCGCCGATGGCCGTAATAT 240
consensus_6005#1      ------------------------------------------------------------
                                                                                  

consensus_6005#0      CATTGCTGATGGCAATGGTGCAGGGTTGAAGGTGCAGGGCAGGGGAGCTGTGAACACAGA 300
consensus_6005#1      -------------GCCGCTGCAGGGTTGAAGGTGCAGGGCAGGGGAGCTGTGAACACAGA 47
                                      * ******************************************

consensus_6005#0      AACTGTGGTTCTCCCTGCAGAAGTGTGGTATGTGCCGGAGATTGATGAAAACTTGGTTTC 360
consensus_6005#1      AACTGTGGTTCTCCCTGCAGAAGTGTGGTATGTGCCGGAGATTGATGAAAACTTGGTTTC 107
                      ************************************************************

consensus_6005#0      TGTTGACCAGCTCAATGAACTTGGCCTCAGTATTTCGATTGGCCGAGGTGTATGCACCGT 420
consensus_6005#1      TGTTGACCAGCTCAATGAACTTGGCCTCAGTATTTCGATTGGCCGAGGTGTATGCACCGT 167
                      ************************************************************

consensus_6005#0      CACTAGAGTTAGTGATGGATCTGTAGTTGGCAAAGCGCGTAGATCAGGTGGAGTCTATGA 480
consensus_6005#1      CACTAGAGTTAGTGATGGATCTGTAGTTGGCAAAGCGCGTAGATCAGGTGGAGTCTATGA 227
                      ************************************************************

consensus_6005#0      GGTGGAATTCCTCAAGGTTCCCCTTAATTAGCACCAGAAATTCCTTGCTGCAGTATCAGT 540
consensus_6005#1      GGTGGAATTCCTCAG-----CCTGTGAGCAGAACTGAGGATTT-----TACCATGTTGGT 277
                      **************      **  * *  ** **     ***      * *  * *  **

consensus_6005#0      TGGGGTAGTCAGACTCGTATGATGATATTGCCTACTATATGCAATGCTTGTTGGGTTGGA 600
consensus_6005#1      TTG---ACCTTGTCTTTTACCAC--TGTTTTTAAGTTCCTGTA--GCCTGTTGAGCTGTT 330
                      * *   *    * **  **  *   * **    * *   ** *  ** ***** * **  

consensus_6005#0      ACTTAAGTTGGATCTTTCAGTAGTTAAGGGATCTGGAGTTTTCTCTGAATGTAAAAACTA 660
consensus_6005#1      -CATATCCATCGACTTGCAATTGCCATTTCAGTTTCAGTGTTCCTGCCCTGCTGATTT-- 387
                       * **        *** ** * *  *    *  *  *** ***      **   *     

consensus_6005#0      AAAAGTGAAAGAAGGAGCTGCCTGTGAGCAGAACTGAGGATTTTACCATGTTGGTTTGAC 720
consensus_6005#1      ------------------------------------------------------------
                                                                                  

consensus_6005#0      CTTGTCTTTTACCACTGTTTTTAAGTTCCTGTAGCCTGTTGAGCT 765
consensus_6005#1      ---------------------------------------------