These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6015#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1189 fasta sequence [CGCTCCTCCCGTCGCCAGGTCGCCACCGCCGCCGAAGCCGCGCCGCCCATTCTCGCTCCTCCCGTCGTCAGATCACCGCCAGGCCGCACCTCCACTCTTCCTCGCTTCGCCCCTCGTCTCCTCCGCCGCACCCTCCCCTCCTCTCCGGCTCCCTCCCCCTCGCCTCCTCCGTCACCGCCCTCCCCTCCTCCTCCCCCTCCGGCTCCCCTCCCCTTCCGGCCTCCTCCCCTCGCGCTCGTCGCCGGCGAGGCGGCCCAAATCCCTTCTCCCTTCGCGGGCGAGGTGTTCGACGGACTCCTCCTCCTCCTCCCTTCTGCGCGGCCTCCTCGCGTCACGCGCGCCCACGCACGGCCAGCGACGAGCAGGCTTGGAGGGCGCGACGCGGTGCCCGGCCTCCGCCCCTCCCGCCTCTGCCCTCCGTCTCAGTTCGAGTCGAATCGAAGGGCGAGGCTGATCGATTGATGCATGGGCGAGGCGGATCGGTGGAGGTGTGCTTCCAGGGACGAAGGGTGCGTGCCGCTAGCGACAGACGTCTGGACGCCCTGCCGATCGATCTGGAGGTGGGGTTCCCTGGTAGGCGAGGAGGGCTTCGTCTCGTAAGCGCGGGATGTTCATGAGGAGCAGCAGCTCATCAGATTGATGATTAGTGGTCAGCGTCACTGGGATTTAGGCTTTGAAGAAAGATCTCCTAAGGCATATCAAGGTGACTATATAAACTGCATCTGTTGATCCGCGATCTGTAACTGCATTTGCCGTCAAGACTCTGAAACTGCATCTGTTGCCAAGATACTCTGTGCCTTGCCCTGGCACGGGATAATCCTTCACGTGGCACAGACTACACCACCGGCAACCTCGTCCATGGCGCACTCACCTCCCTAAGACTATTTACTAAACAGATTGCCATGCGTAACCCTGCCAATCAGAGCTCTCCTGTGCCCATATCCTGTTGTTTCCAGTCGACATCCTTGGTTCATGCCTCAATTGAAGGTTATGGAGACAGAAACGGGTGACTTTTGTTAACTAAATTTGCACGATCTCTTAACAATTTGTAGTACGGGGAAGAAAAATTTCTGAAGTGTGTCACAAGTGCTAAACACTAGGATGGTTATTTACCTACAGGGTAGTATATTATATATATGTATTAAATGCTCTATTTTGTGTCCGCAACAAATAATGGAACAACTCTATA] [+] EMBL AK073642 [CGCTCCTCCCGTCGCCAGGTCGCCACCGCCGCCGAAGCCGCGCCGCCCATTCTCGCTCCTCCCGTCGTCAGATCACCGCCAGGCCGCACCTCCACTCTTCCTCGCTTCGCCCCTCGTCTCCTCCGCCGCACCCTCCCCTCCTCTCCGGCTCCCTCCCCCTCGCCTCCTCCGTCACCGCCCTCCCCTCCTCCTCCCCCTCCGGCTCCCCTCCCCTTCCGGCCTCCTCCCCTCGCGCTCGTCGCCGGCGAGGCGGCCCAAATCCCTTCTCCCTTCGCGGGCGAGGTGTTCGACGGACTCCTCCTCCTCCTCCCTTCTGCGCGGCCTCCTCGCGTCACGCGCGCCCACGCACGGCCAGCGACGAGCAGGCTTGGAGGGCGCGACGCGGTGCCCGGCCTCCGCCCCTCCCGCCTCTGCCCTCCGTCTCAGTTCGAGTCGAATCGAAGGGCGAGGCTGATCGATTGATGCATGGGCGAGGCGGATCGGTGGAGGTGTGCTTCCAGGGACGAAGGGTGCGTGCCGCTAGCGACAGACGTCTGGACGCCCTGCCGATCGATCTGGAGGTGGGGTTCCCTGGTAGGCGAGGAGGGCTTCGTCTCGTAAGCGCGGGATGTTCATGAGGAGCAGCAGCTCATCAGATTGATGATTAGTGGTCAGCGTCACTGGGATTTAGGCTTTGAAGAAAGATCTCCTAAGGCATATCAAGGTGACTATATAAACTGCATCTGTTGATCCGCGATCTGTAACTGCATTTGCCGTCAAGACTCTGAAACTGCATCTGTTGCCAAGATACTCTGTGCCTTGCCCTGGCACGGGATAATCCTTCACGTGGCACAGACTACACCACCGGCAACCTCGTCCATGGCGCACTCACCTCCCTAAGACTATTTACTAAACAGATTGCCATGCGTAACCCTGCCAATCAGAGCTCTCCTGTGCCCATATCCTGTTGTTTCCAGTCGACATCCTTGGTTCATGCCTCAATTGAAGGTTATGGAGACAGAAACGGGTGACTTTTGTTAACTAAATTTGCACGATCTCTTAACAATTTGTAGTACGGGGAAGAAAAATTTCTGAAGTGTGTCACAAGTGCTAAACACTAGGATGGTTATTTACCTACAGGGTAGTATATTATATATATGTATTAAATGCTCTATTTTGTGTCCGCAACAAATAATGGAACAACTCTATA] [+] EMBL AK099371 [CGCTCCTCCCGTCGCCAGGTCGCCACCGCCGCCGAAGCCGCGCCGCCCATTCTCGCTCCTCCCGTCGTCAGATCACCGCCAGGCCGCACCTCCACTCTTCCTCGCTTCGCCCCTCGTCTCCTCCGCCGCACCCTCCCCTCCTCTCCGGCTCCCTCCCCCTCGCCTCCTCCGTCACCGCCCTCCCCTCCTCCTCCCCCTCCGGCTCCCCTCCCCTTCCGGCCTCCTCCCCTCGCGCTCGTCGCCGGCGAGGCGGCCCAAATCCCTTCTCCCTTCGCGGGCGAGGTGTTCGACGGACTCCTCCTCCTCCTCCCTTCTGCGCGGCCTCCTCGCGTCACGCGCGCCCACGCACGGCCAGCGACGAGCAGGCTTGGAGGGCGCGACGCGGTGCCCGGCCTCCGCCCCTCCCGCCTCTGCCCTCCGTCTCAGTTCGAGTCGAATCGAAGGGCGAGGCTGATCGATTGATGCATGGGCGAGGCGGATCGGTGGAGGTGTGCTTCCAGGGACGAAGGGTGCGTGCCGCTAGCGACAGACGTCTGGACGCCCTGCCGATCGATCTGGAGGTGGGGTTCCCTGGTAGGCGAGGAGGGCTTCGTCTCGTAAGCGCGGGATGTTCATGAGGAGCAGCAGCTCATCAGATTGATGATTAGTGGTCAGCGTCACTGGGATTTAGGCTTTGAAGAAAGATCTCCTAAGGCATATCAAGGTGACTATATAAACTGCATCTGTTGATCCGCGATCTGTAACTGCATTTGCCGTCAAGACTCTGAAACTGCATCTGTTGCCAAGATACTCTGTGCCTTGCCCTGGCACGGGATAATCCTTCACGTGGCACAGACTACACCACCGGCAACCTCGTCCATGGCGCACTCACCTCCCTAAGACTATTTACTAAACAGATTGCCATGCGTAACCCTGCCAATCAGAGCTCTCCTGTGCCCATATCCTGTTGTTTCCAGTCGACATCCTTGGTTCATGCCTCAATTGAAGGTTATGGAGACAGAAACGGGTGACTTTTGTTAACTAAATTTGCACGATCTCTTAACAATTTGTAGTACGGGGAAGAAAAATTTCTGAAGTGTGTCACAAGTGCTAAACACTAGGATGGTTATTTACCTACAGGGTAGTATATTATATATATGTATTAAATGCTCTATTTTGTGTCCGCAACAAATAATGGAACAACTCTATA] consensusID : consensus_6015#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 788 fasta sequence [GCCTCCTCGCGTCACGCACGCCCACGCACGGCCAGCGACGAGCCCCTCCCGCCTCTACCCTCCGTCTCAGTTCGAGTCGAATCGAAGGGCGAGGCTGATCGATTGATGCATGGGCGAGGCGAATCGGTGGAGGTGTGCTTCCAGGGACGAAGGGTGCGTGCCGCTAGCGACAGACGTCTGGACGCCCTGTCGATCGATCTGGAGGTGGGGTTCCCTGGTAGGCGAGGAGGGCTTCGTCTCGTAAGCGCGGGATGTTCATGAGGAGCAGCAGCTCATCAGATTGATGATTAGTGGTAAATGTTAAAAATAGGTCAGCGTCACTGGGATTTAGGCTTTGAAGAAAGATCTCCTAAGGCATATCAAGGTGACTATATAAACTGCATCTGTTGATCCGCGATTTGTAACTGCATTTGCCGTCAAGACTCTGAAACTGCATCTGTTGCCAAGATACTCTGTGCCTTGCCCTGGCACGGGATAATCCTTCACGTGGCACAGACTACACCACCGGCAACCTCGTCCATGGCGCACTCACCTCCCTAAGACTATTTACTAAACAGGTAAAACACTACCTACTCTATCTCCTGCTCTCTATTCCTCCTATTGATGTCAACAGCATGTGAGCACTACCATGCCAAGGTTTCCATTTTGCACGCAAGATAGCATGTGAATTGTGCTTGCGTCGGGGTCAGATTTTACCTACGATTTGAGTAGATGAATGTAAGTTCATCTTTAAGAAACATTAAACTGTACCTACAAAATCCTACAATTCCTGACTTTGTGTTTATGCA] [+] EMBL CB634127 [GCCTCCTCGCGTCACGCACGCCCACGCACGGCCAGCGACGAGCCCCTCCCGCCTCTACCCTCCGTCTCAGTTCGAGTCGAATCGAAGGGCGAGGCTGATCGATTGATGCATGGGCGAGGCGAATCGGTGGAGGTGTGCTTCCAGGGACGAAGGGTGCGTGCCGCTAGCGACAGACGTCTGGACGCCCTGTCGATCGATCTGGAGGTGGGGTTCCCTGGTAGGCGAGGAGGGCTTCGTCTCGTAAGCGCGGGATGTTCATGAGGAGCAGCAGCTCATCAGATTGATGATTAGTGGTAAATGTTAAAAATAGGTCAGCGTCACTGGGATTTAGGCTTTGAAGAAAGATCTCCTAAGGCATATCAAGGTGACTATATAAACTGCATCTGTTGATCCGCGATTTGTAACTGCATTTGCCGTCAAGACTCTGAAACTGCATCTGTTGCCAAGATACTCTGTGCCTTGCCCTGGCACGGGATAATCCTTCACGTGGCACAGACTACACCACCGGCAACCTCGTCCATGGCGCACTCACCTCCCTAAGACTATTTACTAAACAGGTAAAACACTACCTACTCTATCTCCTGCTCTCTATTCCTCCTATTGATGTCAACAGCATGTGAGCACTACCATGCCAAGGTTTCCATTTTGCACGCAAGATAGCATGTGAATTGTGCTTGCGTCGGGGTCAGATTTTACCTACGATTTGAGTAGATGAATGTAAGTTCATCTTTAAGAAACATTAAACTGTACCTACAAAATCCTACAATTCCTGACTTTGTGTTTATGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6015#0 CGCTCCTCCCGTCGCCAGGTCGCCACCGCCGCCGAAGCCGCGCCGCCCATTCTCGCTCCT 60 consensus_6015#1 ------------------------------------------------------------ consensus_6015#0 CCCGTCGTCAGATCACCGCCAGGCCGCACCTCCACTCTTCCTCGCTTCGCCCCTCGTCTC 120 consensus_6015#1 ------------------------------------------------------------ consensus_6015#0 CTCCGCCGCACCCTCCCCTCCTCTCCGGCTCCCTCCCCCTCGCCTCCTCCGTCACCGCCC 180 consensus_6015#1 ------------------------------------------------------------ consensus_6015#0 TCCCCTCCTCCTCCCCCTCCGGCTCCCCTCCCCTTCCGGCCTCCTCCCCTCGCGCTCGTC 240 consensus_6015#1 ------------------------------------------------------------ consensus_6015#0 GCCGGCGAGGCGGCCCAAATCCCTTCTCCCTTCGCGGGCGAGGTGTTCGACGGACTCCTC 300 consensus_6015#1 ------------------------------------------------------------ consensus_6015#0 CTCCTCCTCCCTTCTGCGCGGCCTCCTCGCGTCACGCGCGCCCACGCACGGCCAGCGACG 360 consensus_6015#1 --------------------GCCTCCTCGCGTCACGCACGCCCACGCACGGCCAGCGACG 40 ***************** ********************** consensus_6015#0 AGCAGGCTTGGAGGGCGCGACGCGGTGCCCGGCCTCCGCCCCTCCCGCCTCTGCCCTCCG 420 consensus_6015#1 AGC------------------------------------CCCTCCCGCCTCTACCCTCCG 64 *** ************* ******* consensus_6015#0 TCTCAGTTCGAGTCGAATCGAAGGGCGAGGCTGATCGATTGATGCATGGGCGAGGCGGAT 480 consensus_6015#1 TCTCAGTTCGAGTCGAATCGAAGGGCGAGGCTGATCGATTGATGCATGGGCGAGGCGAAT 124 ********************************************************* ** consensus_6015#0 CGGTGGAGGTGTGCTTCCAGGGACGAAGGGTGCGTGCCGCTAGCGACAGACGTCTGGACG 540 consensus_6015#1 CGGTGGAGGTGTGCTTCCAGGGACGAAGGGTGCGTGCCGCTAGCGACAGACGTCTGGACG 184 ************************************************************ consensus_6015#0 CCCTGCCGATCGATCTGGAGGTGGGGTTCCCTGGTAGGCGAGGAGGGCTTCGTCTCGTAA 600 consensus_6015#1 CCCTGTCGATCGATCTGGAGGTGGGGTTCCCTGGTAGGCGAGGAGGGCTTCGTCTCGTAA 244 ***** ****************************************************** consensus_6015#0 GCGCGGGATGTTCATGAGGAGCAGCAGCTCATCAGATTGATGATTAGTGGT--------- 651 consensus_6015#1 GCGCGGGATGTTCATGAGGAGCAGCAGCTCATCAGATTGATGATTAGTGGTAAATGTTAA 304 *************************************************** consensus_6015#0 --------CAGCGTCACTGGGATTTAGGCTTTGAAGAAAGATCTCCTAAGGCATATCAAG 703 consensus_6015#1 AAATAGGTCAGCGTCACTGGGATTTAGGCTTTGAAGAAAGATCTCCTAAGGCATATCAAG 364 **************************************************** consensus_6015#0 GTGACTATATAAACTGCATCTGTTGATCCGCGATCTGTAACTGCATTTGCCGTCAAGACT 763 consensus_6015#1 GTGACTATATAAACTGCATCTGTTGATCCGCGATTTGTAACTGCATTTGCCGTCAAGACT 424 ********************************** ************************* consensus_6015#0 CTGAAACTGCATCTGTTGCCAAGATACTCTGTGCCTTGCCCTGGCACGGGATAATCCTTC 823 consensus_6015#1 CTGAAACTGCATCTGTTGCCAAGATACTCTGTGCCTTGCCCTGGCACGGGATAATCCTTC 484 ************************************************************ consensus_6015#0 ACGTGGCACAGACTACACCACCGGCAACCTCGTCCATGGCGCACTCACCTCCCTAAGACT 883 consensus_6015#1 ACGTGGCACAGACTACACCACCGGCAACCTCGTCCATGGCGCACTCACCTCCCTAAGACT 544 ************************************************************ consensus_6015#0 ATTTACTAAACAGATTGCCATGCGTAACCCTGCCAATCAGAGCTCTCCTGTGCCCATATC 943 consensus_6015#1 ATTTACTAAACAGGTAAA-ACAC-TACCTACTCTATCTCCTGCTCTCTATTCCTCCTAT- 601 ************* * * * ** * * * ****** * * * *** consensus_6015#0 CTGTTGTTTCCAGTCGACATCCTTGGTTCATGCCTCAATTGAAGGTTATGGAGACAGA-A 1002 consensus_6015#1 -TGATGTCAACAGCATGTGAGCACTAC-CATGCCAAGGTTTCCATTTTGCACGCAAGATA 659 ** *** *** * ****** ** ** * *** * consensus_6015#0 ACGGGTGACTTTTGTTAACTAAATTTGCACGATCTCTTAACAATTTGTAGTACGGGGAAG 1062 consensus_6015#1 GCATGTGAATTGTGCTTGCGTCGGGGTCAGATTTTACCTACGATTTG-AGTA-GATGAAT 717 * **** ** ** * * ** * * ** ***** **** * *** consensus_6015#0 AAAAATTTCTGAAGTGTGTCACAAGTGCTAAACACTAGGATGGTTATTTACCTACAGGGT 1122 consensus_6015#1 GTAAGTTC-----ATCTTTAAGAAACATTAAACTGTACCTACAAAAT---CCTACAATTC 769 ** ** * * * * ** ***** ** ** ****** consensus_6015#0 AGTATATTATATATATGTATTAAATGCTCTATTTTGTGTCCGCAACAAATAATGGAACAA 1182 consensus_6015#1 CTGACTTTGTGTTTATGCA----------------------------------------- 788 * ** * * **** * consensus_6015#0 CTCTATA 1189 consensus_6015#1 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||