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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6015#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1189 fasta sequence
[CGCTCCTCCCGTCGCCAGGTCGCCACCGCCGCCGAAGCCGCGCCGCCCATTCTCGCTCCTCCCGTCGTCAGATCACCGCCAGGCCGCACCTCCACTCTTCCTCGCTTCGCCCCTCGTCTCCTCCGCCGCACCCTCCCCTCCTCTCCGGCTCCCTCCCCCTCGCCTCCTCCGTCACCGCCCTCCCCTCCTCCTCCCCCTCCGGCTCCCCTCCCCTTCCGGCCTCCTCCCCTCGCGCTCGTCGCCGGCGAGGCGGCCCAAATCCCTTCTCCCTTCGCGGGCGAGGTGTTCGACGGACTCCTCCTCCTCCTCCCTTCTGCGCGGCCTCCTCGCGTCACGCGCGCCCACGCACGGCCAGCGACGAGCAGGCTTGGAGGGCGCGACGCGGTGCCCGGCCTCCGCCCCTCCCGCCTCTGCCCTCCGTCTCAGTTCGAGTCGAATCGAAGGGCGAGGCTGATCGATTGATGCATGGGCGAGGCGGATCGGTGGAGGTGTGCTTCCAGGGACGAAGGGTGCGTGCCGCTAGCGACAGACGTCTGGACGCCCTGCCGATCGATCTGGAGGTGGGGTTCCCTGGTAGGCGAGGAGGGCTTCGTCTCGTAAGCGCGGGATGTTCATGAGGAGCAGCAGCTCATCAGATTGATGATTAGTGGTCAGCGTCACTGGGATTTAGGCTTTGAAGAAAGATCTCCTAAGGCATATCAAGGTGACTATATAAACTGCATCTGTTGATCCGCGATCTGTAACTGCATTTGCCGTCAAGACTCTGAAACTGCATCTGTTGCCAAGATACTCTGTGCCTTGCCCTGGCACGGGATAATCCTTCACGTGGCACAGACTACACCACCGGCAACCTCGTCCATGGCGCACTCACCTCCCTAAGACTATTTACTAAACAGATTGCCATGCGTAACCCTGCCAATCAGAGCTCTCCTGTGCCCATATCCTGTTGTTTCCAGTCGACATCCTTGGTTCATGCCTCAATTGAAGGTTATGGAGACAGAAACGGGTGACTTTTGTTAACTAAATTTGCACGATCTCTTAACAATTTGTAGTACGGGGAAGAAAAATTTCTGAAGTGTGTCACAAGTGCTAAACACTAGGATGGTTATTTACCTACAGGGTAGTATATTATATATATGTATTAAATGCTCTATTTTGTGTCCGCAACAAATAATGGAACAACTCTATA]
[+] EMBL AK073642 [CGCTCCTCCCGTCGCCAGGTCGCCACCGCCGCCGAAGCCGCGCCGCCCATTCTCGCTCCTCCCGTCGTCAGATCACCGCCAGGCCGCACCTCCACTCTTCCTCGCTTCGCCCCTCGTCTCCTCCGCCGCACCCTCCCCTCCTCTCCGGCTCCCTCCCCCTCGCCTCCTCCGTCACCGCCCTCCCCTCCTCCTCCCCCTCCGGCTCCCCTCCCCTTCCGGCCTCCTCCCCTCGCGCTCGTCGCCGGCGAGGCGGCCCAAATCCCTTCTCCCTTCGCGGGCGAGGTGTTCGACGGACTCCTCCTCCTCCTCCCTTCTGCGCGGCCTCCTCGCGTCACGCGCGCCCACGCACGGCCAGCGACGAGCAGGCTTGGAGGGCGCGACGCGGTGCCCGGCCTCCGCCCCTCCCGCCTCTGCCCTCCGTCTCAGTTCGAGTCGAATCGAAGGGCGAGGCTGATCGATTGATGCATGGGCGAGGCGGATCGGTGGAGGTGTGCTTCCAGGGACGAAGGGTGCGTGCCGCTAGCGACAGACGTCTGGACGCCCTGCCGATCGATCTGGAGGTGGGGTTCCCTGGTAGGCGAGGAGGGCTTCGTCTCGTAAGCGCGGGATGTTCATGAGGAGCAGCAGCTCATCAGATTGATGATTAGTGGTCAGCGTCACTGGGATTTAGGCTTTGAAGAAAGATCTCCTAAGGCATATCAAGGTGACTATATAAACTGCATCTGTTGATCCGCGATCTGTAACTGCATTTGCCGTCAAGACTCTGAAACTGCATCTGTTGCCAAGATACTCTGTGCCTTGCCCTGGCACGGGATAATCCTTCACGTGGCACAGACTACACCACCGGCAACCTCGTCCATGGCGCACTCACCTCCCTAAGACTATTTACTAAACAGATTGCCATGCGTAACCCTGCCAATCAGAGCTCTCCTGTGCCCATATCCTGTTGTTTCCAGTCGACATCCTTGGTTCATGCCTCAATTGAAGGTTATGGAGACAGAAACGGGTGACTTTTGTTAACTAAATTTGCACGATCTCTTAACAATTTGTAGTACGGGGAAGAAAAATTTCTGAAGTGTGTCACAAGTGCTAAACACTAGGATGGTTATTTACCTACAGGGTAGTATATTATATATATGTATTAAATGCTCTATTTTGTGTCCGCAACAAATAATGGAACAACTCTATA]
[+] EMBL AK099371 [CGCTCCTCCCGTCGCCAGGTCGCCACCGCCGCCGAAGCCGCGCCGCCCATTCTCGCTCCTCCCGTCGTCAGATCACCGCCAGGCCGCACCTCCACTCTTCCTCGCTTCGCCCCTCGTCTCCTCCGCCGCACCCTCCCCTCCTCTCCGGCTCCCTCCCCCTCGCCTCCTCCGTCACCGCCCTCCCCTCCTCCTCCCCCTCCGGCTCCCCTCCCCTTCCGGCCTCCTCCCCTCGCGCTCGTCGCCGGCGAGGCGGCCCAAATCCCTTCTCCCTTCGCGGGCGAGGTGTTCGACGGACTCCTCCTCCTCCTCCCTTCTGCGCGGCCTCCTCGCGTCACGCGCGCCCACGCACGGCCAGCGACGAGCAGGCTTGGAGGGCGCGACGCGGTGCCCGGCCTCCGCCCCTCCCGCCTCTGCCCTCCGTCTCAGTTCGAGTCGAATCGAAGGGCGAGGCTGATCGATTGATGCATGGGCGAGGCGGATCGGTGGAGGTGTGCTTCCAGGGACGAAGGGTGCGTGCCGCTAGCGACAGACGTCTGGACGCCCTGCCGATCGATCTGGAGGTGGGGTTCCCTGGTAGGCGAGGAGGGCTTCGTCTCGTAAGCGCGGGATGTTCATGAGGAGCAGCAGCTCATCAGATTGATGATTAGTGGTCAGCGTCACTGGGATTTAGGCTTTGAAGAAAGATCTCCTAAGGCATATCAAGGTGACTATATAAACTGCATCTGTTGATCCGCGATCTGTAACTGCATTTGCCGTCAAGACTCTGAAACTGCATCTGTTGCCAAGATACTCTGTGCCTTGCCCTGGCACGGGATAATCCTTCACGTGGCACAGACTACACCACCGGCAACCTCGTCCATGGCGCACTCACCTCCCTAAGACTATTTACTAAACAGATTGCCATGCGTAACCCTGCCAATCAGAGCTCTCCTGTGCCCATATCCTGTTGTTTCCAGTCGACATCCTTGGTTCATGCCTCAATTGAAGGTTATGGAGACAGAAACGGGTGACTTTTGTTAACTAAATTTGCACGATCTCTTAACAATTTGTAGTACGGGGAAGAAAAATTTCTGAAGTGTGTCACAAGTGCTAAACACTAGGATGGTTATTTACCTACAGGGTAGTATATTATATATATGTATTAAATGCTCTATTTTGTGTCCGCAACAAATAATGGAACAACTCTATA]
consensusID : consensus_6015#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 788 fasta sequence
[GCCTCCTCGCGTCACGCACGCCCACGCACGGCCAGCGACGAGCCCCTCCCGCCTCTACCCTCCGTCTCAGTTCGAGTCGAATCGAAGGGCGAGGCTGATCGATTGATGCATGGGCGAGGCGAATCGGTGGAGGTGTGCTTCCAGGGACGAAGGGTGCGTGCCGCTAGCGACAGACGTCTGGACGCCCTGTCGATCGATCTGGAGGTGGGGTTCCCTGGTAGGCGAGGAGGGCTTCGTCTCGTAAGCGCGGGATGTTCATGAGGAGCAGCAGCTCATCAGATTGATGATTAGTGGTAAATGTTAAAAATAGGTCAGCGTCACTGGGATTTAGGCTTTGAAGAAAGATCTCCTAAGGCATATCAAGGTGACTATATAAACTGCATCTGTTGATCCGCGATTTGTAACTGCATTTGCCGTCAAGACTCTGAAACTGCATCTGTTGCCAAGATACTCTGTGCCTTGCCCTGGCACGGGATAATCCTTCACGTGGCACAGACTACACCACCGGCAACCTCGTCCATGGCGCACTCACCTCCCTAAGACTATTTACTAAACAGGTAAAACACTACCTACTCTATCTCCTGCTCTCTATTCCTCCTATTGATGTCAACAGCATGTGAGCACTACCATGCCAAGGTTTCCATTTTGCACGCAAGATAGCATGTGAATTGTGCTTGCGTCGGGGTCAGATTTTACCTACGATTTGAGTAGATGAATGTAAGTTCATCTTTAAGAAACATTAAACTGTACCTACAAAATCCTACAATTCCTGACTTTGTGTTTATGCA]
[+] EMBL CB634127 [GCCTCCTCGCGTCACGCACGCCCACGCACGGCCAGCGACGAGCCCCTCCCGCCTCTACCCTCCGTCTCAGTTCGAGTCGAATCGAAGGGCGAGGCTGATCGATTGATGCATGGGCGAGGCGAATCGGTGGAGGTGTGCTTCCAGGGACGAAGGGTGCGTGCCGCTAGCGACAGACGTCTGGACGCCCTGTCGATCGATCTGGAGGTGGGGTTCCCTGGTAGGCGAGGAGGGCTTCGTCTCGTAAGCGCGGGATGTTCATGAGGAGCAGCAGCTCATCAGATTGATGATTAGTGGTAAATGTTAAAAATAGGTCAGCGTCACTGGGATTTAGGCTTTGAAGAAAGATCTCCTAAGGCATATCAAGGTGACTATATAAACTGCATCTGTTGATCCGCGATTTGTAACTGCATTTGCCGTCAAGACTCTGAAACTGCATCTGTTGCCAAGATACTCTGTGCCTTGCCCTGGCACGGGATAATCCTTCACGTGGCACAGACTACACCACCGGCAACCTCGTCCATGGCGCACTCACCTCCCTAAGACTATTTACTAAACAGGTAAAACACTACCTACTCTATCTCCTGCTCTCTATTCCTCCTATTGATGTCAACAGCATGTGAGCACTACCATGCCAAGGTTTCCATTTTGCACGCAAGATAGCATGTGAATTGTGCTTGCGTCGGGGTCAGATTTTACCTACGATTTGAGTAGATGAATGTAAGTTCATCTTTAAGAAACATTAAACTGTACCTACAAAATCCTACAATTCCTGACTTTGTGTTTATGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6015#0 CGCTCCTCCCGTCGCCAGGTCGCCACCGCCGCCGAAGCCGCGCCGCCCATTCTCGCTCCT 60
consensus_6015#1 ------------------------------------------------------------
consensus_6015#0 CCCGTCGTCAGATCACCGCCAGGCCGCACCTCCACTCTTCCTCGCTTCGCCCCTCGTCTC 120
consensus_6015#1 ------------------------------------------------------------
consensus_6015#0 CTCCGCCGCACCCTCCCCTCCTCTCCGGCTCCCTCCCCCTCGCCTCCTCCGTCACCGCCC 180
consensus_6015#1 ------------------------------------------------------------
consensus_6015#0 TCCCCTCCTCCTCCCCCTCCGGCTCCCCTCCCCTTCCGGCCTCCTCCCCTCGCGCTCGTC 240
consensus_6015#1 ------------------------------------------------------------
consensus_6015#0 GCCGGCGAGGCGGCCCAAATCCCTTCTCCCTTCGCGGGCGAGGTGTTCGACGGACTCCTC 300
consensus_6015#1 ------------------------------------------------------------
consensus_6015#0 CTCCTCCTCCCTTCTGCGCGGCCTCCTCGCGTCACGCGCGCCCACGCACGGCCAGCGACG 360
consensus_6015#1 --------------------GCCTCCTCGCGTCACGCACGCCCACGCACGGCCAGCGACG 40
***************** **********************
consensus_6015#0 AGCAGGCTTGGAGGGCGCGACGCGGTGCCCGGCCTCCGCCCCTCCCGCCTCTGCCCTCCG 420
consensus_6015#1 AGC------------------------------------CCCTCCCGCCTCTACCCTCCG 64
*** ************* *******
consensus_6015#0 TCTCAGTTCGAGTCGAATCGAAGGGCGAGGCTGATCGATTGATGCATGGGCGAGGCGGAT 480
consensus_6015#1 TCTCAGTTCGAGTCGAATCGAAGGGCGAGGCTGATCGATTGATGCATGGGCGAGGCGAAT 124
********************************************************* **
consensus_6015#0 CGGTGGAGGTGTGCTTCCAGGGACGAAGGGTGCGTGCCGCTAGCGACAGACGTCTGGACG 540
consensus_6015#1 CGGTGGAGGTGTGCTTCCAGGGACGAAGGGTGCGTGCCGCTAGCGACAGACGTCTGGACG 184
************************************************************
consensus_6015#0 CCCTGCCGATCGATCTGGAGGTGGGGTTCCCTGGTAGGCGAGGAGGGCTTCGTCTCGTAA 600
consensus_6015#1 CCCTGTCGATCGATCTGGAGGTGGGGTTCCCTGGTAGGCGAGGAGGGCTTCGTCTCGTAA 244
***** ******************************************************
consensus_6015#0 GCGCGGGATGTTCATGAGGAGCAGCAGCTCATCAGATTGATGATTAGTGGT--------- 651
consensus_6015#1 GCGCGGGATGTTCATGAGGAGCAGCAGCTCATCAGATTGATGATTAGTGGTAAATGTTAA 304
***************************************************
consensus_6015#0 --------CAGCGTCACTGGGATTTAGGCTTTGAAGAAAGATCTCCTAAGGCATATCAAG 703
consensus_6015#1 AAATAGGTCAGCGTCACTGGGATTTAGGCTTTGAAGAAAGATCTCCTAAGGCATATCAAG 364
****************************************************
consensus_6015#0 GTGACTATATAAACTGCATCTGTTGATCCGCGATCTGTAACTGCATTTGCCGTCAAGACT 763
consensus_6015#1 GTGACTATATAAACTGCATCTGTTGATCCGCGATTTGTAACTGCATTTGCCGTCAAGACT 424
********************************** *************************
consensus_6015#0 CTGAAACTGCATCTGTTGCCAAGATACTCTGTGCCTTGCCCTGGCACGGGATAATCCTTC 823
consensus_6015#1 CTGAAACTGCATCTGTTGCCAAGATACTCTGTGCCTTGCCCTGGCACGGGATAATCCTTC 484
************************************************************
consensus_6015#0 ACGTGGCACAGACTACACCACCGGCAACCTCGTCCATGGCGCACTCACCTCCCTAAGACT 883
consensus_6015#1 ACGTGGCACAGACTACACCACCGGCAACCTCGTCCATGGCGCACTCACCTCCCTAAGACT 544
************************************************************
consensus_6015#0 ATTTACTAAACAGATTGCCATGCGTAACCCTGCCAATCAGAGCTCTCCTGTGCCCATATC 943
consensus_6015#1 ATTTACTAAACAGGTAAA-ACAC-TACCTACTCTATCTCCTGCTCTCTATTCCTCCTAT- 601
************* * * * ** * * * ****** * * * ***
consensus_6015#0 CTGTTGTTTCCAGTCGACATCCTTGGTTCATGCCTCAATTGAAGGTTATGGAGACAGA-A 1002
consensus_6015#1 -TGATGTCAACAGCATGTGAGCACTAC-CATGCCAAGGTTTCCATTTTGCACGCAAGATA 659
** *** *** * ****** ** ** * *** *
consensus_6015#0 ACGGGTGACTTTTGTTAACTAAATTTGCACGATCTCTTAACAATTTGTAGTACGGGGAAG 1062
consensus_6015#1 GCATGTGAATTGTGCTTGCGTCGGGGTCAGATTTTACCTACGATTTG-AGTA-GATGAAT 717
* **** ** ** * * ** * * ** ***** **** * ***
consensus_6015#0 AAAAATTTCTGAAGTGTGTCACAAGTGCTAAACACTAGGATGGTTATTTACCTACAGGGT 1122
consensus_6015#1 GTAAGTTC-----ATCTTTAAGAAACATTAAACTGTACCTACAAAAT---CCTACAATTC 769
** ** * * * * ** ***** ** ** ******
consensus_6015#0 AGTATATTATATATATGTATTAAATGCTCTATTTTGTGTCCGCAACAAATAATGGAACAA 1182
consensus_6015#1 CTGACTTTGTGTTTATGCA----------------------------------------- 788
* ** * * **** *
consensus_6015#0 CTCTATA 1189
consensus_6015#1 -------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||