cluster # 6017

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Oryza sativa
cluster # 6017 cluster # 6017 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6017#0 length = 1100 sequences # 1

consensus_6017#1 length = 636 sequences # 1
consensus_6017#2 length = 439 sequences # 1

consensusID : consensus_6017#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1100
fasta sequence

                              [ACGCGCACTCTCACTCACACGGAGAGAGAGAGAGAGAGAGACTAGACTAGTAGTACCAATTAATGGCGGCGCTCTCCTCCTGCTTACTCGCCGCCGTCCGACCTCATCCTCCACCTCCACCTCGACCGCTCTCCCCTTCCTTCATCCCCTCTGCCCTCCGCCACCGCCACCGCCTCAGCCAAGCGCCGCCCCTCGCCACCTCTCTCCCACGACCACGACCACCATGGTGCCGCTTCTCCGCCTCCTCGCCGCCACCGCCACCCGACGACCCTGACGACTACGAGCTGTTGGACACGACAGGAAATTGTGATCCTTTATGCTCCGTTGATGAAGTTAGCTCACAGTATTTTGAAGCTAACTACAAGCCAAAAAATGATCTTCTTAAAGCTTTAACTATAATAGCAACAGCTTTGGCTGGGGCAGCTGCAATAAACCATTCCTGGGTTGCTGAACATCAGGACATTGCAATGGTGCTAGTGTTTGCTCTCGGTTATGCAGGTATCATATTTGAGGAATCACTAGCGTTTAACAAAAGTGGAGTTGGATTGCTCATGGCCGTTTGCCTATGGGTTATCAGAAGTATCGGGGCTCCATCTACTGATGTAGCAGTTCAAGAGTTGAGTCATACAACCGCCGAAGTTAGTGAAATAGTCTTTTTCTTGCTCGGTGCAATGACCATTGTTGAGATTGTTGATGCACATCAAGGATTTAAGCTAGTGACTGACAATATATCTACTCGAAATCCAAGAACTCTTCTCTGGGTGATAGGGTTTGTAACTTTCTTCTTGAGTTCTATCCTTGACAATTTGACTTCCACTATTGTGATGGTTTCATTGCTTCGGAAACTAGTACCTCCATCAGAGTACAGAAAATTGTTAGGCGCTGTTGTTGTGATATCTGCAAATGCTGGGGGTGCATGGACACCAATTGGTGATGTGACGACCACTATGTTGTGGATTCATGGTCAGATTACAACGTTGAACACAATGCAGGGCTTGTTTCTTCCCTCAGTTGTTTCATTGGCAGTTCCACTGGCTCTGATGTCCCTCACGAGTGAAGCAAATGGATCTTCTCAGAAATCTTCCAGCTTGCTGTCATCA]

[+] EMBL AK059327             [ACGCGCACTCTCACTCACACGGAGAGAGAGAGAGAGAGAGACTAGACTAGTAGTACCAATTAATGGCGGCGCTCTCCTCCTGCTTACTCGCCGCCGTCCGACCTCATCCTCCACCTCCACCTCGACCGCTCTCCCCTTCCTTCATCCCCTCTGCCCTCCGCCACCGCCACCGCCTCAGCCAAGCGCCGCCCCTCGCCACCTCTCTCCCACGACCACGACCACCATGGTGCCGCTTCTCCGCCTCCTCGCCGCCACCGCCACCCGACGACCCTGACGACTACGAGCTGTTGGACACGACAGGAAATTGTGATCCTTTATGCTCCGTTGATGAAGTTAGCTCACAGTATTTTGAAGCTAACTACAAGCCAAAAAATGATCTTCTTAAAGCTTTAACTATAATAGCAACAGCTTTGGCTGGGGCAGCTGCAATAAACCATTCCTGGGTTGCTGAACATCAGGACATTGCAATGGTGCTAGTGTTTGCTCTCGGTTATGCAGGTATCATATTTGAGGAATCACTAGCGTTTAACAAAAGTGGAGTTGGATTGCTCATGGCCGTTTGCCTATGGGTTATCAGAAGTATCGGGGCTCCATCTACTGATGTAGCAGTTCAAGAGTTGAGTCATACAACCGCCGAAGTTAGTGAAATAGTCTTTTTCTTGCTCGGTGCAATGACCATTGTTGAGATTGTTGATGCACATCAAGGATTTAAGCTAGTGACTGACAATATATCTACTCGAAATCCAAGAACTCTTCTCTGGGTGATAGGGTTTGTAACTTTCTTCTTGAGTTCTATCCTTGACAATTTGACTTCCACTATTGTGATGGTTTCATTGCTTCGGAAACTAGTACCTCCATCAGAGTACAGAAAATTGTTAGGCGCTGTTGTTGTGATATCTGCAAATGCTGGGGGTGCATGGACACCAATTGGTGATGTGACGACCACTATGTTGTGGATTCATGGTCAGATTACAACGTTGAACACAATGCAGGGCTTGTTTCTTCCCTCAGTTGTTTCATTGGCAGTTCCACTGGCTCTGATGTCCCTCACGAGTGAAGCAAATGGATCTTCTCAGAAATCTTCCAGCTTGCTGTCATCA]




>consensus_6017#0
ACGCGCACTCTCACTCACACGGAGAGAGAGAGAGAGAGAGACTAGACTAGTAGTACCAAT
TAATGGCGGCGCTCTCCTCCTGCTTACTCGCCGCCGTCCGACCTCATCCTCCACCTCCAC
CTCGACCGCTCTCCCCTTCCTTCATCCCCTCTGCCCTCCGCCACCGCCACCGCCTCAGCC
AAGCGCCGCCCCTCGCCACCTCTCTCCCACGACCACGACCACCATGGTGCCGCTTCTCCG
CCTCCTCGCCGCCACCGCCACCCGACGACCCTGACGACTACGAGCTGTTGGACACGACAG
GAAATTGTGATCCTTTATGCTCCGTTGATGAAGTTAGCTCACAGTATTTTGAAGCTAACT
ACAAGCCAAAAAATGATCTTCTTAAAGCTTTAACTATAATAGCAACAGCTTTGGCTGGGG
CAGCTGCAATAAACCATTCCTGGGTTGCTGAACATCAGGACATTGCAATGGTGCTAGTGT
TTGCTCTCGGTTATGCAGGTATCATATTTGAGGAATCACTAGCGTTTAACAAAAGTGGAG
TTGGATTGCTCATGGCCGTTTGCCTATGGGTTATCAGAAGTATCGGGGCTCCATCTACTG
ATGTAGCAGTTCAAGAGTTGAGTCATACAACCGCCGAAGTTAGTGAAATAGTCTTTTTCT
TGCTCGGTGCAATGACCATTGTTGAGATTGTTGATGCACATCAAGGATTTAAGCTAGTGA
CTGACAATATATCTACTCGAAATCCAAGAACTCTTCTCTGGGTGATAGGGTTTGTAACTT
TCTTCTTGAGTTCTATCCTTGACAATTTGACTTCCACTATTGTGATGGTTTCATTGCTTC
GGAAACTAGTACCTCCATCAGAGTACAGAAAATTGTTAGGCGCTGTTGTTGTGATATCTG
CAAATGCTGGGGGTGCATGGACACCAATTGGTGATGTGACGACCACTATGTTGTGGATTC
ATGGTCAGATTACAACGTTGAACACAATGCAGGGCTTGTTTCTTCCCTCAGTTGTTTCAT
TGGCAGTTCCACTGGCTCTGATGTCCCTCACGAGTGAAGCAAATGGATCTTCTCAGAAAT
CTTCCAGCTTGCTGTCATCA

consensusID : consensus_6017#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 636
fasta sequence

                              [AATGGCGGCGCTCTCCTCCTGCTTACTCGCCGCCGTCCGACCTCATCCTCCACCTCCACCTCGACCGCTCTCCCCTTCCTTCATCCCCTCTGCCCTCCGCCACCGCCACCGCCTCAGCCAAGCGCCGCCCCTCGCCACCTCTCTCCCACGACCACGACCACCATGGTGCCGCTTCTCCGCCTCCTCGCCGCCACCGCCACCCGACGACCCTGACGACTACGAGCTGTTGGACACGACAGGAAATTGTGATCCTTTATGCTCCGTTGATGAAGTTAGCTCACAGTATTTTGAAGCTAACTACAAGCCAAAAAATGATCTTCTTAAAGCTTTAACTATAATAGCAACAGCTTTGGCTGGGGCAGCTGCAATAAACCATTCCTGGGTTGCTGAACATCAGGACATTGCAATGGTGCTAGTGTTTGCTCTCGGTTATGCAGGTATCATATTTGAGGAATCACTAGCGTTTAACAAAAGTGGAGTTGGATTGCTCATGGCCGTTTGCCTATGGGTTATCAGAAGTATCGGGGTAAGCTAATCTGTGAAGTTGCCGTGAAGACTTGAACAACCCTTTCCCGATGACAAGCTATCGGTCCTACATCTTGTATCTTTAAGATTAACCTATCAATCCTAAATCTT]

[+] EMBL CF305228             [AATGGCGGCGCTCTCCTCCTGCTTACTCGCCGCCGTCCGACCTCATCCTCCACCTCCACCTCGACCGCTCTCCCCTTCCTTCATCCCCTCTGCCCTCCGCCACCGCCACCGCCTCAGCCAAGCGCCGCCCCTCGCCACCTCTCTCCCACGACCACGACCACCATGGTGCCGCTTCTCCGCCTCCTCGCCGCCACCGCCACCCGACGACCCTGACGACTACGAGCTGTTGGACACGACAGGAAATTGTGATCCTTTATGCTCCGTTGATGAAGTTAGCTCACAGTATTTTGAAGCTAACTACAAGCCAAAAAATGATCTTCTTAAAGCTTTAACTATAATAGCAACAGCTTTGGCTGGGGCAGCTGCAATAAACCATTCCTGGGTTGCTGAACATCAGGACATTGCAATGGTGCTAGTGTTTGCTCTCGGTTATGCAGGTATCATATTTGAGGAATCACTAGCGTTTAACAAAAGTGGAGTTGGATTGCTCATGGCCGTTTGCCTATGGGTTATCAGAAGTATCGGGGTAAGCTAATCTGTGAAGTTGCCGTGAAGACTTGAACAACCCTTTCCCGATGACAAGCTATCGGTCCTACATCTTGTATCTTTAAGATTAACCTATCAATCCTAAATCTT]




>consensus_6017#1
AATGGCGGCGCTCTCCTCCTGCTTACTCGCCGCCGTCCGACCTCATCCTCCACCTCCACC
TCGACCGCTCTCCCCTTCCTTCATCCCCTCTGCCCTCCGCCACCGCCACCGCCTCAGCCA
AGCGCCGCCCCTCGCCACCTCTCTCCCACGACCACGACCACCATGGTGCCGCTTCTCCGC
CTCCTCGCCGCCACCGCCACCCGACGACCCTGACGACTACGAGCTGTTGGACACGACAGG
AAATTGTGATCCTTTATGCTCCGTTGATGAAGTTAGCTCACAGTATTTTGAAGCTAACTA
CAAGCCAAAAAATGATCTTCTTAAAGCTTTAACTATAATAGCAACAGCTTTGGCTGGGGC
AGCTGCAATAAACCATTCCTGGGTTGCTGAACATCAGGACATTGCAATGGTGCTAGTGTT
TGCTCTCGGTTATGCAGGTATCATATTTGAGGAATCACTAGCGTTTAACAAAAGTGGAGT
TGGATTGCTCATGGCCGTTTGCCTATGGGTTATCAGAAGTATCGGGGTAAGCTAATCTGT
GAAGTTGCCGTGAAGACTTGAACAACCCTTTCCCGATGACAAGCTATCGGTCCTACATCT
TGTATCTTTAAGATTAACCTATCAATCCTAAATCTT

consensusID : consensus_6017#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 439
fasta sequence

                              [GTGGGAGAGAGGTGGCGAGGNGCGGCGCTTCTCCGCCTCCTCGCCGCCACCGCCACCCGACGACCCTGACGACTACGAGCTGTTGGACACGACAGGAAATTGTGATCCTTTATGCTCCGTTGATGAAGTTAGCTCACAGTATTTTGAAGCTAACTACAAGCCAAAAAATGATCTTCTTAAAGCTTTAACTATAATAGCAACAGCTTTGGCTGGGGCAGNTGCAATAAACCATTCCTGGGTTNCTGAACATCAGGACATTGCAATGGTGCTAGTGTTTGCTCTCGGTTATGCAGGTATCATATTTGAGGAATCACTAGCGTTTAACAAAAGTGGAGTTGGATTTCTCATGGCCGNTTGCCTATGGGGTTATCAAGAAGTATCGGGGCTCCATCTACTTGATGTAGAAGTTCAAAGAGTTNAGTCATACAACCGCCGAAGT]

[+] EMBL OSS13769A            [GTGGGAGAGAGGTGGCGAGGNGCGGCGCTTCTCCGCCTCCTCGCCGCCACCGCCACCCGACGACCCTGACGACTACGAGCTGTTGGACACGACAGGAAATTGTGATCCTTTATGCTCCGTTGATGAAGTTAGCTCACAGTATTTTGAAGCTAACTACAAGCCAAAAAATGATCTTCTTAAAGCTTTAACTATAATAGCAACAGCTTTGGCTGGGGCAGNTGCAATAAACCATTCCTGGGTTNCTGAACATCAGGACATTGCAATGGTGCTAGTGTTTGCTCTCGGTTATGCAGGTATCATATTTGAGGAATCACTAGCGTTTAACAAAAGTGGAGTTGGATTTCTCATGGCCGNTTGCCTATGGGGTTATCAAGAAGTATCGGGGCTCCATCTACTTGATGTAGAAGTTCAAAGAGTTNAGTCATACAACCGCCGAAGT]




>consensus_6017#2
GTGGGAGAGAGGTGGCGAGGNGCGGCGCTTCTCCGCCTCCTCGCCGCCACCGCCACCCGA
CGACCCTGACGACTACGAGCTGTTGGACACGACAGGAAATTGTGATCCTTTATGCTCCGT
TGATGAAGTTAGCTCACAGTATTTTGAAGCTAACTACAAGCCAAAAAATGATCTTCTTAA
AGCTTTAACTATAATAGCAACAGCTTTGGCTGGGGCAGNTGCAATAAACCATTCCTGGGT
TNCTGAACATCAGGACATTGCAATGGTGCTAGTGTTTGCTCTCGGTTATGCAGGTATCAT
ATTTGAGGAATCACTAGCGTTTAACAAAAGTGGAGTTGGATTTCTCATGGCCGNTTGCCT
ATGGGGTTATCAAGAAGTATCGGGGCTCCATCTACTTGATGTAGAAGTTCAAAGAGTTNA
GTCATACAACCGCCGAAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6017#0      ACGCGCACTCTCACTCACACGGAGAGAGAGAGAGAGAGAGACTAGACTAGTAGTACCAAT 60
consensus_6017#2      ------------------------------------------------------------
consensus_6017#1      ------------------------------------------------------------
                                                                                  

consensus_6017#0      TAATGGCGGCGCTCTCCTCCTGCTTACTCGCCGCCGTCCGACCTCATCCTCCACCTCCAC 120
consensus_6017#2      ------------------------------------------------------------
consensus_6017#1      -AATGGCGGCGCTCTCCTCCTGCTTACTCGCCGCCGTCCGACCTCATCCTCCACCTCCAC 59
                                                                                  

consensus_6017#0      CTCGACCGCTCTCCCCTTCCTTCATCCCCTCTGCCCTCCGCCACCGCCACCGCCTCAGCC 180
consensus_6017#2      ------------------------------------------------------------
consensus_6017#1      CTCGACCGCTCTCCCCTTCCTTCATCCCCTCTGCCCTCCGCCACCGCCACCGCCTCAGCC 119
                                                                                  

consensus_6017#0      AAGCGCCGCCCCTCGCCACCTCTCTCCCACGACCACGACCACCATGG-TGCCGCTTCTCC 239
consensus_6017#2      --------------------------GTGGGAGAGAGGTGGCGAGGNGCGGCGCTTCTCC 34
consensus_6017#1      AAGCGCCGCCCCTCGCCACCTCTCTCCCACGACCACGACCACCATGG-TGCCGCTTCTCC 178
                                                    **    *    * * *   * *********

consensus_6017#0      GCCTCCTCGCCGCCACCGCCACCCGACGACCCTGACGACTACGAGCTGTTGGACACGACA 299
consensus_6017#2      GCCTCCTCGCCGCCACCGCCACCCGACGACCCTGACGACTACGAGCTGTTGGACACGACA 94
consensus_6017#1      GCCTCCTCGCCGCCACCGCCACCCGACGACCCTGACGACTACGAGCTGTTGGACACGACA 238
                      ************************************************************

consensus_6017#0      GGAAATTGTGATCCTTTATGCTCCGTTGATGAAGTTAGCTCACAGTATTTTGAAGCTAAC 359
consensus_6017#2      GGAAATTGTGATCCTTTATGCTCCGTTGATGAAGTTAGCTCACAGTATTTTGAAGCTAAC 154
consensus_6017#1      GGAAATTGTGATCCTTTATGCTCCGTTGATGAAGTTAGCTCACAGTATTTTGAAGCTAAC 298
                      ************************************************************

consensus_6017#0      TACAAGCCAAAAAATGATCTTCTTAAAGCTTTAACTATAATAGCAACAGCTTTGGCTGGG 419
consensus_6017#2      TACAAGCCAAAAAATGATCTTCTTAAAGCTTTAACTATAATAGCAACAGCTTTGGCTGGG 214
consensus_6017#1      TACAAGCCAAAAAATGATCTTCTTAAAGCTTTAACTATAATAGCAACAGCTTTGGCTGGG 358
                      ************************************************************

consensus_6017#0      GCAGCTGCAATAAACCATTCCTGGGTTGCTGAACATCAGGACATTGCAATGGTGCTAGTG 479
consensus_6017#2      GCAGNTGCAATAAACCATTCCTGGGTTNCTGAACATCAGGACATTGCAATGGTGCTAGTG 274
consensus_6017#1      GCAGCTGCAATAAACCATTCCTGGGTTGCTGAACATCAGGACATTGCAATGGTGCTAGTG 418
                      **** ********************** ********************************

consensus_6017#0      TTTGCTCTCGGTTATGCAGGTATCATATTTGAGGAATCACTAGCGTTTAACAAAAGTGGA 539
consensus_6017#2      TTTGCTCTCGGTTATGCAGGTATCATATTTGAGGAATCACTAGCGTTTAACAAAAGTGGA 334
consensus_6017#1      TTTGCTCTCGGTTATGCAGGTATCATATTTGAGGAATCACTAGCGTTTAACAAAAGTGGA 478
                      ************************************************************

consensus_6017#0      GTTGGATTGCTCATGGCCGTTTGCCTATGGG-TTATCA-GAAGTATCGGGGCTCCATCTA 597
consensus_6017#2      GTTGGATTTCTCATGGCCGNTTGCCTATGGGGTTATCAAGAAGTATCGGGGCTCCATCTA 394
consensus_6017#1      GTTGGATTGCTCATGGCCGTTTGCCTATGGG-TTATCA-GAAGTATCGGGGT--AAGCTA 534
                      ******** ********** *********** ****** ************    * ***

consensus_6017#0      CT-GATGTAGCAGTTCAA-GAGTTGAGTCATACAACCGCCGAAGTTAGTGAAATAGTCTT 655
consensus_6017#2      CTTGATGTAGAAGTTCAAAGAGTTNAGTCATACAACCGCCGAAGT--------------- 439
consensus_6017#1      ATCTGTGAAGTTGCCGTGAAGACTTGAACAACCCTTTCCCGATGACAAGCTATCGGTCCT 594
                       *   ** **  *          *    **  *     **** *                

consensus_6017#0      TTTCTTGCTCGGTGCAATGACCATTGTTGAGATTGTTGATGCACATCAAGGATTTAAGCT 715
consensus_6017#2      ------------------------------------------------------------
consensus_6017#1      ACATCTTGTATCTTTAAGATTAACCTATCAATCCTAAATCTT------------------ 636
                                                                                  

consensus_6017#0      AGTGACTGACAATATATCTACTCGAAATCCAAGAACTCTTCTCTGGGTGATAGGGTTTGT 775
consensus_6017#2      ------------------------------------------------------------
consensus_6017#1      ------------------------------------------------------------
                                                                                  

consensus_6017#0      AACTTTCTTCTTGAGTTCTATCCTTGACAATTTGACTTCCACTATTGTGATGGTTTCATT 835
consensus_6017#2      ------------------------------------------------------------
consensus_6017#1      ------------------------------------------------------------
                                                                                  

consensus_6017#0      GCTTCGGAAACTAGTACCTCCATCAGAGTACAGAAAATTGTTAGGCGCTGTTGTTGTGAT 895
consensus_6017#2      ------------------------------------------------------------
consensus_6017#1      ------------------------------------------------------------
                                                                                  

consensus_6017#0      ATCTGCAAATGCTGGGGGTGCATGGACACCAATTGGTGATGTGACGACCACTATGTTGTG 955
consensus_6017#2      ------------------------------------------------------------
consensus_6017#1      ------------------------------------------------------------
                                                                                  

consensus_6017#0      GATTCATGGTCAGATTACAACGTTGAACACAATGCAGGGCTTGTTTCTTCCCTCAGTTGT 1015
consensus_6017#2      ------------------------------------------------------------
consensus_6017#1      ------------------------------------------------------------
                                                                                  

consensus_6017#0      TTCATTGGCAGTTCCACTGGCTCTGATGTCCCTCACGAGTGAAGCAAATGGATCTTCTCA 1075
consensus_6017#2      ------------------------------------------------------------
consensus_6017#1      ------------------------------------------------------------
                                                                                  

consensus_6017#0      GAAATCTTCCAGCTTGCTGTCATCA 1100
consensus_6017#2      -------------------------
consensus_6017#1      -------------------------