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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6020#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1691 fasta sequence
[ACTTGCGGCGGAAGCGCCACTCTCTCCTCTCCTCTCCTCCCTCCCCCCCACCCATCCCCCGCGCCCCACGCGCCCACGTTGGCGGTGCGGTTGATCCGGCAACAGCGGGCGCCTCCTCCTCCTCCGCCCCCAACCACCACCCCCACCCCTGCGGCGCCCATGGGTGTCCGTTCCTGAGCACACCCCACGCTTCCGCTCCGCGCATCTCCGTGGGTGGGTTGGGCATATACCTTGCTTCAGTCGCTTTCCCATCTCTTGCTTCGTCCTGCCTTCTTCTTTCTTCCGTGATCCCGGAACCCGGTGGTCGCCGCCGCCTCGGTGGATCTTGCTCGGCCCTGCGGGGTGCTCAGGATTAACAGTGAGGGGACATTCTGTATTCAGTAATATCAAGTTTCTACAAATAAATAGGTGTAGGAATACCTTTGATGCCCCATTTACACTGTTTGTGCAATGTCTTTATATTATATTTTCTGTGGGAACTTCCATCAACTAAGGAATTCAATAGGAAGCTGTTCTAGTACCGGTTTGCTTAAATGCGGATTAATCTATAGAACTGTACTTCAGAACAGAGGAAATAAAACTCGACCAATCAGTACGACAATACTAGCAAGAAGTACAAGAAAAGAAAGTAAGCAGTCATTCAAAACCAGCCGTCATTTGCATAGTGAATCGGTTGAGTCATCGATTGAAGTGCTCAAACAGTCAGATCTTGAGCATCTTAAATCACTTCAATGCTACAATATTCCACAAAAGGTTTCCGGAGTGAAGACCGATTGGCCTGCAACTATCCTTGTTTTTGATATTGAAACTACAGGCTTCTCACGCCGCTATGAAAGAATCATTGAGTTTGCTGTTCGGGATCTTATGGGAGGAAAGAATAGCACTATCCAGACACTCATAAATCCTGAGAGAGAGATAAAAAATGCATATGTTCATGGTATTAGCAGCAGCATGGTCTGCAAACCTGATATACCAAGATTTCGGGAGTTTATCCCTCTTCTATTACAGTATGTTTTGAGTCGTCAAATGGCTGATAAACCAGTTCTGTGGGTCGCTCATAATGGACGTAGCTTTGATGTACCATTTCTCATGTATGAATTCCAACGGAGTAAAATAGAGATGCCTGGTGACTGGCTATTTGTAGATACACTTCCAATTGCAAGGCAATTGATTGGTTCTGATGGGGAAAAACTGAAATCTGTATCTTTAGACAATCTGAGGGAGCACTACAAGATCCCATTGGCAGGGAGCGCTCATCGAGCAATGCAGGATGTGATCACCCTCTGCTATGTTCTCCAGAAGTTGACCTTCGAGCTGAAACTAACTGTTCCTCAGCTCCTTGAGAGGTCATTCCGGGTTTCCGATCTTTCAATCCCTCGCCCTGGAAAATGACTGCAGTTGCCTCGCCGAAAGGATCACACAGAAACCTGGATTGTTTCATTGTCCTTGTATCCAGTGCTGTTGTTTCAGATCCCAGCTCATATGTTATTCCGACAACAGAATAAGGCAGGCCTGATCGTTACCGTGATATTAATCATTTTTAGTTTAGTACTGATACTTGTTGCCCCTTGAAACATTGATTAGACGTACATTTATTCAAAGTTGTAAAGACCAAAACATGTCCTGGTTTCCAACCTGGAAGAAATGAAACGTTCTTGACTATCTGTAGTCACTGTGGTAAAAAAAGCGGC]
[+] EMBL AK101988 [ACTTGCGGCGGAAGCGCCACTCTCTCCTCTCCTCTCCTCCCTCCCCCCCACCCATCCCCCGCGCCCCACGCGCCCACGTTGGCGGTGCGGTTGATCCGGCAACAGCGGGCGCCTCCTCCTCCTCCGCCCCCAACCACCACCCCCACCCCTGCGGCGCCCATGGGTGTCCGTTCCTGAGCACACCCCACGCTTCCGCTCCGCGCATCTCCGTGGGTGGGTTGGGCATATACCTTGCTTCAGTCGCTTTCCCATCTCTTGCTTCGTCCTGCCTTCTTCTTTCTTCCGTGATCCCGGAACCCGGTGGTCGCCGCCGCCTCGGTGGATCTTGCTCGGCCCTGCGGGGTGCTCAGGATTAACAGTGAGGGGACATTCTGTATTCAGTAATATCAAGTTTCTACAAATAAATAGGTGTAGGAATACCTTTGATGCCCCATTTACACTGTTTGTGCAATGTCTTTATATTATATTTTCTGTGGGAACTTCCATCAACTAAGGAATTCAATAGGAAGCTGTTCTAGTACCGGTTTGCTTAAATGCGGATTAATCTATAGAACTGTACTTCAGAACAGAGGAAATAAAACTCGACCAATCAGTACGACAATACTAGCAAGAAGTACAAGAAAAGAAAGTAAGCAGTCATTCAAAACCAGCCGTCATTTGCATAGTGAATCGGTTGAGTCATCGATTGAAGTGCTCAAACAGTCAGATCTTGAGCATCTTAAATCACTTCAATGCTACAATATTCCACAAAAGGTTTCCGGAGTGAAGACCGATTGGCCTGCAACTATCCTTGTTTTTGATATTGAAACTACAGGCTTCTCACGCCGCTATGAAAGAATCATTGAGTTTGCTGTTCGGGATCTTATGGGAGGAAAGAATAGCACTATCCAGACACTCATAAATCCTGAGAGAGAGATAAAAAATGCATATGTTCATGGTATTAGCAGCAGCATGGTCTGCAAACCTGATATACCAAGATTTCGGGAGTTTATCCCTCTTCTATTACAGTATGTTTTGAGTCGTCAAATGGCTGATAAACCAGTTCTGTGGGTCGCTCATAATGGACGTAGCTTTGATGTACCATTTCTCATGTATGAATTCCAACGGAGTAAAATAGAGATGCCTGGTGACTGGCTATTTGTAGATACACTTCCAATTGCAAGGCAATTGATTGGTTCTGATGGGGAAAAACTGAAATCTGTATCTTTAGACAATCTGAGGGAGCACTACAAGATCCCATTGGCAGGGAGCGCTCATCGAGCAATGCAGGATGTGATCACCCTCTGCTATGTTCTCCAGAAGTTGACCTTCGAGCTGAAACTAACTGTTCCTCAGCTCCTTGAGAGGTCATTCCGGGTTTCCGATCTTTCAATCCCTCGCCCTGGAAAATGACTGCAGTTGCCTCGCCGAAAGGATCACACAGAAACCTGGATTGTTTCATTGTCCTTGTATCCAGTGCTGTTGTTTCAGATCCCAGCTCATATGTTATTCCGACAACAGAATAAGGCAGGCCTGATCGTTACCGTGATATTAATCATTTTTAGTTTAGTACTGATACTTGTTGCCCCTTGAAACATTGATTAGACGTACATTTATTCAAAGTTGTAAAGACCAAAACATGTCCTGGTTTCCAACCTGGAAGAAATGAAACGTTCTTGACT ]
[-] EMBL AU225242 [ ACACAGAAACCTGGATTGTTTCATTGTCCTTGTATCCAGTGCTGTTGTTTCAGATCCCAGCTCATATGTTATTCCGACAACAGAATAAGGCAGGCCTGATCGTTACCGTGATATTAATCATTTTTAGTTTAGTACTGATACTTGTTGCCCCTTGAAACATTGATTAGACGTACATTTATTCAAAGTTGTAAAGACCAAAACATGTCCTGGTTTCCAACCTGGAAGAAATGAAACGTTCTTGACTATCTGTAGTCACTGTGGTAAAAAAAGCGGC]
consensusID : consensus_6020#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 288 fasta sequence
[GAGAGAGAGATAAAAAATGCATATGTTCATGGTATTAGCAGCAGCATGGTCTGCAAACCTGATATACCAAGATTTCGGGAGTTTATCCCTATTCTATTACAGTATGTTYYTGAGTYGTCAAATGGCTGATAAACCAGTTCTGTGGGKCGCTCATAATGGACGTAGCTTTGATGTACCATTTCTCATGTATGAATTCCAACGRGTGTAAATAGAGATGTCCTBTGTGACYKGCTATWTTGTAGATACACTYTYCCMAWTKCGMAGGGGAATTGAGTTGAGTTCTCKATA]
[+] EMBL AA752640 [GAGAGAGAGATAAAAAATGCATATGTTCATGGTATTAGCAGCAGCATGGTCTGCAAACCTGATATACCAAGATTTCGGGAGTTTATCCCTATTCTATTACAGTATGTTYYTGAGTYGTCAAATGGCTGATAAACCAGTTCTGTGGGKCGCTCATAATGGACGTAGCTTTGATGTACCATTTCTCATGTATGAATTCCAACGRGTGTAAATAGAGATGTCCTBTGTGACYKGCTATWTTGTAGATACACTYTYCCMAWTKCGMAGGGGAATTGAGTTGAGTTCTCKATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6020#0 ACTTGCGGCGGAAGCGCCACTCTCTCCTCTCCTCTCCTCCCTCCCCCCCACCCATCCCCC 60
consensus_6020#1 ------------------------------------------------------------
consensus_6020#0 GCGCCCCACGCGCCCACGTTGGCGGTGCGGTTGATCCGGCAACAGCGGGCGCCTCCTCCT 120
consensus_6020#1 ------------------------------------------------------------
consensus_6020#0 CCTCCGCCCCCAACCACCACCCCCACCCCTGCGGCGCCCATGGGTGTCCGTTCCTGAGCA 180
consensus_6020#1 ------------------------------------------------------------
consensus_6020#0 CACCCCACGCTTCCGCTCCGCGCATCTCCGTGGGTGGGTTGGGCATATACCTTGCTTCAG 240
consensus_6020#1 ------------------------------------------------------------
consensus_6020#0 TCGCTTTCCCATCTCTTGCTTCGTCCTGCCTTCTTCTTTCTTCCGTGATCCCGGAACCCG 300
consensus_6020#1 ------------------------------------------------------------
consensus_6020#0 GTGGTCGCCGCCGCCTCGGTGGATCTTGCTCGGCCCTGCGGGGTGCTCAGGATTAACAGT 360
consensus_6020#1 ------------------------------------------------------------
consensus_6020#0 GAGGGGACATTCTGTATTCAGTAATATCAAGTTTCTACAAATAAATAGGTGTAGGAATAC 420
consensus_6020#1 ------------------------------------------------------------
consensus_6020#0 CTTTGATGCCCCATTTACACTGTTTGTGCAATGTCTTTATATTATATTTTCTGTGGGAAC 480
consensus_6020#1 ------------------------------------------------------------
consensus_6020#0 TTCCATCAACTAAGGAATTCAATAGGAAGCTGTTCTAGTACCGGTTTGCTTAAATGCGGA 540
consensus_6020#1 ------------------------------------------------------------
consensus_6020#0 TTAATCTATAGAACTGTACTTCAGAACAGAGGAAATAAAACTCGACCAATCAGTACGACA 600
consensus_6020#1 ------------------------------------------------------------
consensus_6020#0 ATACTAGCAAGAAGTACAAGAAAAGAAAGTAAGCAGTCATTCAAAACCAGCCGTCATTTG 660
consensus_6020#1 ------------------------------------------------------------
consensus_6020#0 CATAGTGAATCGGTTGAGTCATCGATTGAAGTGCTCAAACAGTCAGATCTTGAGCATCTT 720
consensus_6020#1 ------------------------------------------------------------
consensus_6020#0 AAATCACTTCAATGCTACAATATTCCACAAAAGGTTTCCGGAGTGAAGACCGATTGGCCT 780
consensus_6020#1 ------------------------------------------------------------
consensus_6020#0 GCAACTATCCTTGTTTTTGATATTGAAACTACAGGCTTCTCACGCCGCTATGAAAGAATC 840
consensus_6020#1 ------------------------------------------------------------
consensus_6020#0 ATTGAGTTTGCTGTTCGGGATCTTATGGGAGGAAAGAATAGCACTATCCAGACACTCATA 900
consensus_6020#1 ------------------------------------------------------------
consensus_6020#0 AATCCTGAGAGAGAGATAAAAAATGCATATGTTCATGGTATTAGCAGCAGCATGGTCTGC 960
consensus_6020#1 ------GAGAGAGAGATAAAAAATGCATATGTTCATGGTATTAGCAGCAGCATGGTCTGC 54
******************************************************
consensus_6020#0 AAACCTGATATACCAAGATTTCGGGAGTTTATCCCTCTTCTATTACAGTATGTTTT-GAG 1019
consensus_6020#1 AAACCTGATATACCAAGATTTCGGGAGTTTATCCCTATTCTATTACAGTATGTTYYTGAG 114
************************************ ***************** ***
consensus_6020#0 TCGTCAAATGGCTGATAAACCAGTTCTGTGGGTCGCTCATAATGGACGTAGCTTTGATGT 1079
consensus_6020#1 TYGTCAAATGGCTGATAAACCAGTTCTGTGGGKCGCTCATAATGGACGTAGCTTTGATGT 174
* ****************************** ***************************
consensus_6020#0 ACCATTTCTCATGTATGAATTCCAACGGAGTAAAATAGAGATGCC--TGGTGACTGGCTA 1137
consensus_6020#1 ACCATTTCTCATGTATGAATTCCAACGRGTGTAAATAGAGATGTCCTBTGTGACYKGCTA 234
*************************** *********** * ***** ****
consensus_6020#0 TTT-GTAGATACACTT--CCAATTGCAA--GGCAATTGATTGGTTCTGATGGGGAAAAAC 1192
consensus_6020#1 TWTTGTAGATACACTYTYCCMAWTKCGMAGGGGAATTGAGTTGAGTTCTCKATA------ 288
* * *********** ** * * * ** ****** * * *
consensus_6020#0 TGAAATCTGTATCTTTAGACAATCTGAGGGAGCACTACAAGATCCCATTGGCAGGGAGCG 1252
consensus_6020#1 ------------------------------------------------------------
consensus_6020#0 CTCATCGAGCAATGCAGGATGTGATCACCCTCTGCTATGTTCTCCAGAAGTTGACCTTCG 1312
consensus_6020#1 ------------------------------------------------------------
consensus_6020#0 AGCTGAAACTAACTGTTCCTCAGCTCCTTGAGAGGTCATTCCGGGTTTCCGATCTTTCAA 1372
consensus_6020#1 ------------------------------------------------------------
consensus_6020#0 TCCCTCGCCCTGGAAAATGACTGCAGTTGCCTCGCCGAAAGGATCACACAGAAACCTGGA 1432
consensus_6020#1 ------------------------------------------------------------
consensus_6020#0 TTGTTTCATTGTCCTTGTATCCAGTGCTGTTGTTTCAGATCCCAGCTCATATGTTATTCC 1492
consensus_6020#1 ------------------------------------------------------------
consensus_6020#0 GACAACAGAATAAGGCAGGCCTGATCGTTACCGTGATATTAATCATTTTTAGTTTAGTAC 1552
consensus_6020#1 ------------------------------------------------------------
consensus_6020#0 TGATACTTGTTGCCCCTTGAAACATTGATTAGACGTACATTTATTCAAAGTTGTAAAGAC 1612
consensus_6020#1 ------------------------------------------------------------
consensus_6020#0 CAAAACATGTCCTGGTTTCCAACCTGGAAGAAATGAAACGTTCTTGACTATCTGTAGTCA 1672
consensus_6020#1 ------------------------------------------------------------
consensus_6020#0 CTGTGGTAAAAAAAGCGGC 1691
consensus_6020#1 -------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||