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Oryza sativa
cluster # 6026 cluster # 6026       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6026#0 length = 1650 sequences # 2  
consensus_6026#1 length = 614 sequences # 1  

consensusID : consensus_6026#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1650
fasta sequence
                              [GTGAGAGCAAGCATCAATGGAAGCCGCCGGTGGCGGCGGCCGGCGCGGCACGGTGAAGCAGCTCAACGTGGGCGGCAAGCTCTTCGCCTTGGAGGCAAGCTCCCTCCCGATCTCCCTCTCTCTCTCGCCTTCCCCAAACCCAATCTTCGTGGACCGCGACCCCGCCCTTCTCTCCGCGATCCTCTCCGCCATCCGCGCCCCCTCCGCCGCGCCCGCCTTCCCCGCCGGCGTCCTCCTCGACGAGGCCCACTCCTACGGCCTCCAAGACCAGCTCCTCGCCGCCCTCTCCCCTCCGCCCCTCCTCGGCTTCTCCGCCTCCCGCGCCTCCACGCTCTCCCCGCCCTCCGAGCCCTTCCCCACCGCGCTCGCCCAGCGCCACGATGGCTCGCTCTGCCTCGCCCATGGCGCCGGCCTGCTCACCCACTACTCCCCTGCGCTGGAGCACCTCACCACCTTCCGGACCCATCTCCACCGCATCACCTCCCTCCGGCAGCTGCCTCCTGGCCTCGCTGTTGCCGGGTCCAGCCTCTCCCCGGGGCTCCATGTGTACGACCTCCTCAAAGGTCGGCACGTCGCCTCTGTCCAATGGTCAGATCCCACCGACCTTCGCGTTCAAAAGGCCAAGGTGATTGCCATTGCCGCCCGTCCTGCTGCCGATGCAGCTGATAAGAATTCACCCATCTTAGCTACATTCGAGTGCCCACACCGGGAGAATTGCATCCTGGTGTTTGACCCTGTAACTCTAAAGCCCATTCAAGAGATTGGCCGGCAAACTGGCAGCGCAGCTAAGTCGTCGGCGCCAGGCCGAGTAGTGCACCTGCAGGAGCTTGGGCTGGTATTTGCGGCATCTGTGAGCTCGGGGGCATTTGGTTACTCTGGGTACATGAGGCTGTGGGACATTCGTTCTGGGGATGTGGTGTGGGAAACAAGCGAGCCAGGGGGAGTTGGAAGAAGCAGCCGGTTTGGAGATCCATTTGCAGATGTGGATGTTGACGTTAAGCAACGGATACTATACAAGGTGTGCTCAAAGTCAGGAGATATTGGAGCCGCTGACTTGAGATGCCTTGGTAAAGACCCTTGGGTTTATATGTCGTCAGGACCTAGAGGGAGTGGAGGGGGCCATGGCAGTGTTCTGCATTGCTACAAGTCTCAGGTGTTTGTCAGCCGGAAGGATGGATTGGAGGTTTGGTCTCGACTGGAAGAACAGAGCAATGGCACAGCCAACTTGGCGGAGCAAACGAGAGCAAAGGAAAACATCAACAACGAAGGAATAAACGAGAACTGTTTTAGGAGTTG-CTATGTGGATACAGAAGAGGATGCTGACCGTGGTATGATACACATCATGGAAGGGGGTGGAGACCGCTTATTTGTTACCAGAGAAGAAATGCAAGGCGTGGAGGTGTGGGAGACCTCCCAGCTGGCTGGTGCTATCTCTCTATCTCTTAGCAGTTTGCTTGTCTGAACATGATTGACCTGTGGCAATTCAGGTGGTTCTATTAAACGTGAGTGTGCATTTTCTACCATAGCATCGCATTATTCAGTACTGAAAATTCCTCTCAAGTCATGATGCGGTAATGTTATAATTCTTGCTTCTGCATCTGTATTTTGTGGTGATCAAATCCCTTGGATGTTGGTAAGCTTATTTCATAT]

[+] EMBL AK111791             [GTGAGAGCAAGCATCAATGGAAGCCGCCGGTGGCGGCGGCCGGCGCGGCACGGTGAAGCAGCTCAACGTGGGCGGCAAGCTCTTCGCCTTGGAGGCAAGCTCCCTCCCGATCTCCCTCTCTCTCTCGCCTTCCCCAAACCCAATCTTCGTGGACCGCGACCCCGCCCTTCTCTCCGCGATCCTCTCCGCCATCCGCGCCCCCTCCGCCGCGCCCGCCTTCCCCGCCGGCGTCCTCCTCGACGAGGCCCACTCCTACGGCCTCCAAGACCAGCTCCTCGCCGCCCTCTCCCCTCCGCCCCTCCTCGGCTTCTCCGCCTCCCGCGCCTCCACGCTCTCCCCGCCCTCCGAGCCCTTCCCCACCGCGCTCGCCCAGCGCCACGATGGCTCGCTCTGCCTCGCCCATGGCGCCGGCCTGCTCACCCACTACTCCCCTGCGCTGGAGCACCTCACCACCTTCCGGACCCATCTCCACCGCATCACCTCCCTCCGGCAGCTGCCTCCTGGCCTCGCTGTTGCCGGGTCCAGCCTCTCCCCGGGGCTCCATGTGTACGACCTCCTCAAAGGTCGGCACGTCGCCTCTGTCCAATGGTCAGATCCCACCGACCTTCGCGTTCAAAAGGCCAAGGTGATTGCCATTGCCGCCCGTCCTGCTGCCGATGCAGCTGATAAGAATTCACCCATCTTAGCTACATTCGAGTGCCCACACCGGGAGAATTGCATCCTGGTGTTTGACCCTGTAACTCTAAAGCCCATTCAAGAGATTGGCCGGCAAACTGGCAGCGCAGCTAAGTCGTCGGCGCCAGGCCGAGTAGTGCACCTGCAGGAGCTTGGGCTGGTATTTGCGGCATCTGTGAGCTCGGGGGCATTTGGTTACTCTGGGTACATGAGGCTGTGGGACATTCGTTCTGGGGATGTGGTGTGGGAAACAAGCGAGCCAGGGGGAGTTGGAAGAAGCAGCCGGTTTGGAGATCCATTTGCAGATGTGGATGTTGACGTTAAGCAACGGATACTATACAAGGTGTGCTCAAAGTCAGGAGATATTGGAGCCGCTGACTTGAGATGCCTTGGTAAAGACCCTTGGGTTTATATGTCGTCAGGACCTAGAGGGAGTGGAGGGGGCCATGGCAGTGTTCTGCATTGCTACAAGTCTCAGGTGTTTGTCAGCCGGAAGGATGGATTGGAGGTTTGGTCTCGACTGGAAGAACAGAGCAATGGCACAGCCAACTTGGCGGAGCAAACGAGAGCAAAGGAAAACATCAACAACGAAGGAATAAACGAGAACTGTTTTAGGAGTTG CTATGTGGATACAGAAGAGGATGCTGACCGTGGTATGATACACATCATGGAAGGGGGTGGAGACCGCTTATTTGTTACCAGAGAAGAAATGCAAGGCGTGGAGGTGTGGGAGACCTCCCAGCTGGCTGGTGCTATCTCTCTATCTCTTAGCAGTTTGCTTGTCTGAACATGATTGACCTGTGGCAATTCAGGTGGTTCTATTAAACGTGAGTGTGCATTTTCTACCATAGCATCGCATTATTCAGTACTGAAAATTCCTCTCAAGTCATGATGCGGTAATGTTATAATTCTTGCTTCTGCATCTGTATTTTGTGGTGATCAAATCCCTTGGATGTTGGTAAGCTTATTTCATAT]
[+] EMBL AA749832             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GAGAACTGTTTTAGGAGTTGCCTATGTGGATACAGAAGAAGATGCTGACCGTGGTATGATACACATCATGGAAGGGGGTGGAGACCGCTTATTTGTTACCAGAGAAGAAATGCAAGGCGTGGTGG GTGGGAGACCTCCCAGCTGGCTGGTGCTATCTCTCTATCTCTTAGCAGTTTACTTGTCTGAACTAGATTGACTTG GGCA  TCAG                                                                                                                                                                   ]


>consensus_6026#0 GTGAGAGCAAGCATCAATGGAAGCCGCCGGTGGCGGCGGCCGGCGCGGCACGGTGAAGCA GCTCAACGTGGGCGGCAAGCTCTTCGCCTTGGAGGCAAGCTCCCTCCCGATCTCCCTCTC TCTCTCGCCTTCCCCAAACCCAATCTTCGTGGACCGCGACCCCGCCCTTCTCTCCGCGAT CCTCTCCGCCATCCGCGCCCCCTCCGCCGCGCCCGCCTTCCCCGCCGGCGTCCTCCTCGA CGAGGCCCACTCCTACGGCCTCCAAGACCAGCTCCTCGCCGCCCTCTCCCCTCCGCCCCT CCTCGGCTTCTCCGCCTCCCGCGCCTCCACGCTCTCCCCGCCCTCCGAGCCCTTCCCCAC CGCGCTCGCCCAGCGCCACGATGGCTCGCTCTGCCTCGCCCATGGCGCCGGCCTGCTCAC CCACTACTCCCCTGCGCTGGAGCACCTCACCACCTTCCGGACCCATCTCCACCGCATCAC CTCCCTCCGGCAGCTGCCTCCTGGCCTCGCTGTTGCCGGGTCCAGCCTCTCCCCGGGGCT CCATGTGTACGACCTCCTCAAAGGTCGGCACGTCGCCTCTGTCCAATGGTCAGATCCCAC CGACCTTCGCGTTCAAAAGGCCAAGGTGATTGCCATTGCCGCCCGTCCTGCTGCCGATGC AGCTGATAAGAATTCACCCATCTTAGCTACATTCGAGTGCCCACACCGGGAGAATTGCAT CCTGGTGTTTGACCCTGTAACTCTAAAGCCCATTCAAGAGATTGGCCGGCAAACTGGCAG CGCAGCTAAGTCGTCGGCGCCAGGCCGAGTAGTGCACCTGCAGGAGCTTGGGCTGGTATT TGCGGCATCTGTGAGCTCGGGGGCATTTGGTTACTCTGGGTACATGAGGCTGTGGGACAT TCGTTCTGGGGATGTGGTGTGGGAAACAAGCGAGCCAGGGGGAGTTGGAAGAAGCAGCCG GTTTGGAGATCCATTTGCAGATGTGGATGTTGACGTTAAGCAACGGATACTATACAAGGT GTGCTCAAAGTCAGGAGATATTGGAGCCGCTGACTTGAGATGCCTTGGTAAAGACCCTTG GGTTTATATGTCGTCAGGACCTAGAGGGAGTGGAGGGGGCCATGGCAGTGTTCTGCATTG CTACAAGTCTCAGGTGTTTGTCAGCCGGAAGGATGGATTGGAGGTTTGGTCTCGACTGGA AGAACAGAGCAATGGCACAGCCAACTTGGCGGAGCAAACGAGAGCAAAGGAAAACATCAA CAACGAAGGAATAAACGAGAACTGTTTTAGGAGTTGCTATGTGGATACAGAAGAGGATGC TGACCGTGGTATGATACACATCATGGAAGGGGGTGGAGACCGCTTATTTGTTACCAGAGA AGAAATGCAAGGCGTGGAGGTGTGGGAGACCTCCCAGCTGGCTGGTGCTATCTCTCTATC TCTTAGCAGTTTGCTTGTCTGAACATGATTGACCTGTGGCAATTCAGGTGGTTCTATTAA ACGTGAGTGTGCATTTTCTACCATAGCATCGCATTATTCAGTACTGAAAATTCCTCTCAA GTCATGATGCGGTAATGTTATAATTCTTGCTTCTGCATCTGTATTTTGTGGTGATCAAAT CCCTTGGATGTTGGTAAGCTTATTTCATAT



consensusID : consensus_6026#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 614
fasta sequence
                              [GAGACAAGGGGGGGAAACAAGCGAGCCAGGGGGAGTTGGAAGAAGCAGCCGGTTTGGAGATCCATTTGCAGATGTGGATGTTGACGTTAAGCAACAGATACTATACAAGGTGTGCTCAAAGTCAGGAGATATTGGAGCCGCTGACCTGAGATGCCTTGGTAAAGACCCTTGGGTTTATATGTCGTCAGGACCTAGAGGGAGTGGAGGGGGCCATGGCAGTGTTTTGCATTGCTACAAGTCGCAGGTGTTTGTCACCCGGAAGGATGGATTGGAGGTTTGGTCTCGACTGGAAGAACAGAGCAATGGCCCAGCCAACTTGGCGGAGCAAACGAGAGCAAAGGAAAACATCACCAACGAAGGAATAAACGAGAACTGTTTTTGGAGTTGCTATGTGGATACAGAAAAAAATGCTGACCGTGGTTTGATACCCATCATGGAAGGGGGTGGAGACCGCTTATTTGTTACCAGAGAAAAAATGCAAGGCGTGGAGGTGTGGGAGACCTCCCAGCTGGCTGGTGCTATCTCTCTATCTTTTAGCAGTTTACTTGTTTGAACATGATTGACCTGTGGCAATTCAGGTGGTTTTATTAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA762225             [GAGACAAGGGGGGGAAACAAGCGAGCCAGGGGGAGTTGGAAGAAGCAGCCGGTTTGGAGATCCATTTGCAGATGTGGATGTTGACGTTAAGCAACAGATACTATACAAGGTGTGCTCAAAGTCAGGAGATATTGGAGCCGCTGACCTGAGATGCCTTGGTAAAGACCCTTGGGTTTATATGTCGTCAGGACCTAGAGGGAGTGGAGGGGGCCATGGCAGTGTTTTGCATTGCTACAAGTCGCAGGTGTTTGTCACCCGGAAGGATGGATTGGAGGTTTGGTCTCGACTGGAAGAACAGAGCAATGGCCCAGCCAACTTGGCGGAGCAAACGAGAGCAAAGGAAAACATCACCAACGAAGGAATAAACGAGAACTGTTTTTGGAGTTGCTATGTGGATACAGAAAAAAATGCTGACCGTGGTTTGATACCCATCATGGAAGGGGGTGGAGACCGCTTATTTGTTACCAGAGAAAAAATGCAAGGCGTGGAGGTGTGGGAGACCTCCCAGCTGGCTGGTGCTATCTCTCTATCTTTTAGCAGTTTACTTGTTTGAACATGATTGACCTGTGGCAATTCAGGTGGTTTTATTAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_6026#1 GAGACAAGGGGGGGAAACAAGCGAGCCAGGGGGAGTTGGAAGAAGCAGCCGGTTTGGAGA TCCATTTGCAGATGTGGATGTTGACGTTAAGCAACAGATACTATACAAGGTGTGCTCAAA GTCAGGAGATATTGGAGCCGCTGACCTGAGATGCCTTGGTAAAGACCCTTGGGTTTATAT GTCGTCAGGACCTAGAGGGAGTGGAGGGGGCCATGGCAGTGTTTTGCATTGCTACAAGTC GCAGGTGTTTGTCACCCGGAAGGATGGATTGGAGGTTTGGTCTCGACTGGAAGAACAGAG CAATGGCCCAGCCAACTTGGCGGAGCAAACGAGAGCAAAGGAAAACATCACCAACGAAGG AATAAACGAGAACTGTTTTTGGAGTTGCTATGTGGATACAGAAAAAAATGCTGACCGTGG TTTGATACCCATCATGGAAGGGGGTGGAGACCGCTTATTTGTTACCAGAGAAAAAATGCA AGGCGTGGAGGTGTGGGAGACCTCCCAGCTGGCTGGTGCTATCTCTCTATCTTTTAGCAG TTTACTTGTTTGAACATGATTGACCTGTGGCAATTCAGGTGGTTTTATTAAAAAAAAAAA AAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6026#0      GTGAGAGCAAGCATCAATGGAAGCCGCCGGTGGCGGCGGCCGGCGCGGCACGGTGAAGCA 60
consensus_6026#1      ------------------------------------------------------------
                                                                                  

consensus_6026#0      GCTCAACGTGGGCGGCAAGCTCTTCGCCTTGGAGGCAAGCTCCCTCCCGATCTCCCTCTC 120
consensus_6026#1      ------------------------------------------------------------
                                                                                  

consensus_6026#0      TCTCTCGCCTTCCCCAAACCCAATCTTCGTGGACCGCGACCCCGCCCTTCTCTCCGCGAT 180
consensus_6026#1      ------------------------------------------------------------
                                                                                  

consensus_6026#0      CCTCTCCGCCATCCGCGCCCCCTCCGCCGCGCCCGCCTTCCCCGCCGGCGTCCTCCTCGA 240
consensus_6026#1      ------------------------------------------------------------
                                                                                  

consensus_6026#0      CGAGGCCCACTCCTACGGCCTCCAAGACCAGCTCCTCGCCGCCCTCTCCCCTCCGCCCCT 300
consensus_6026#1      ------------------------------------------------------------
                                                                                  

consensus_6026#0      CCTCGGCTTCTCCGCCTCCCGCGCCTCCACGCTCTCCCCGCCCTCCGAGCCCTTCCCCAC 360
consensus_6026#1      ------------------------------------------------------------
                                                                                  

consensus_6026#0      CGCGCTCGCCCAGCGCCACGATGGCTCGCTCTGCCTCGCCCATGGCGCCGGCCTGCTCAC 420
consensus_6026#1      ------------------------------------------------------------
                                                                                  

consensus_6026#0      CCACTACTCCCCTGCGCTGGAGCACCTCACCACCTTCCGGACCCATCTCCACCGCATCAC 480
consensus_6026#1      ------------------------------------------------------------
                                                                                  

consensus_6026#0      CTCCCTCCGGCAGCTGCCTCCTGGCCTCGCTGTTGCCGGGTCCAGCCTCTCCCCGGGGCT 540
consensus_6026#1      ------------------------------------------------------------
                                                                                  

consensus_6026#0      CCATGTGTACGACCTCCTCAAAGGTCGGCACGTCGCCTCTGTCCAATGGTCAGATCCCAC 600
consensus_6026#1      ------------------------------------------------------------
                                                                                  

consensus_6026#0      CGACCTTCGCGTTCAAAAGGCCAAGGTGATTGCCATTGCCGCCCGTCCTGCTGCCGATGC 660
consensus_6026#1      ------------------------------------------------------------
                                                                                  

consensus_6026#0      AGCTGATAAGAATTCACCCATCTTAGCTACATTCGAGTGCCCACACCGGGAGAATTGCAT 720
consensus_6026#1      ------------------------------------------------------------
                                                                                  

consensus_6026#0      CCTGGTGTTTGACCCTGTAACTCTAAAGCCCATTCAAGAGATTGGCCGGCAAACTGGCAG 780
consensus_6026#1      ------------------------------------------------------------
                                                                                  

consensus_6026#0      CGCAGCTAAGTCGTCGGCGCCAGGCCGAGTAGTGCACCTGCAGGAGCTTGGGCTGGTATT 840
consensus_6026#1      ------------------------------------------------------------
                                                                                  

consensus_6026#0      TGCGGCATCTGTGAGCTCGGGGGCATTTGGTTACTCTGGGTACATGAGGCTGTGGGACAT 900
consensus_6026#1      ------------------------------------------------------------
                                                                                  

consensus_6026#0      TCGTTCTGGGGATGTGGTGTGGGAAACAAGCGAGCCAGGGGGAGTTGGAAGAAGCAGCCG 960
consensus_6026#1      --------GAGACAAGG-GGGGGAAACAAGCGAGCCAGGGGGAGTTGGAAGAAGCAGCCG 51
                              * **   ** * ****************************************

consensus_6026#0      GTTTGGAGATCCATTTGCAGATGTGGATGTTGACGTTAAGCAACGGATACTATACAAGGT 1020
consensus_6026#1      GTTTGGAGATCCATTTGCAGATGTGGATGTTGACGTTAAGCAACAGATACTATACAAGGT 111
                      ******************************************** ***************

consensus_6026#0      GTGCTCAAAGTCAGGAGATATTGGAGCCGCTGACTTGAGATGCCTTGGTAAAGACCCTTG 1080
consensus_6026#1      GTGCTCAAAGTCAGGAGATATTGGAGCCGCTGACCTGAGATGCCTTGGTAAAGACCCTTG 171
                      ********************************** *************************

consensus_6026#0      GGTTTATATGTCGTCAGGACCTAGAGGGAGTGGAGGGGGCCATGGCAGTGTTCTGCATTG 1140
consensus_6026#1      GGTTTATATGTCGTCAGGACCTAGAGGGAGTGGAGGGGGCCATGGCAGTGTTTTGCATTG 231
                      **************************************************** *******

consensus_6026#0      CTACAAGTCTCAGGTGTTTGTCAGCCGGAAGGATGGATTGGAGGTTTGGTCTCGACTGGA 1200
consensus_6026#1      CTACAAGTCGCAGGTGTTTGTCACCCGGAAGGATGGATTGGAGGTTTGGTCTCGACTGGA 291
                      ********* ************* ************************************

consensus_6026#0      AGAACAGAGCAATGGCACAGCCAACTTGGCGGAGCAAACGAGAGCAAAGGAAAACATCAA 1260
consensus_6026#1      AGAACAGAGCAATGGCCCAGCCAACTTGGCGGAGCAAACGAGAGCAAAGGAAAACATCAC 351
                      **************** ****************************************** 

consensus_6026#0      CAACGAAGGAATAAACGAGAACTGTTTTAGGAGTTGCTATGTGGATACAGAAGAGGATGC 1320
consensus_6026#1      CAACGAAGGAATAAACGAGAACTGTTTTTGGAGTTGCTATGTGGATACAGAAAAAAATGC 411
                      **************************** *********************** *  ****

consensus_6026#0      TGACCGTGGTATGATACACATCATGGAAGGGGGTGGAGACCGCTTATTTGTTACCAGAGA 1380
consensus_6026#1      TGACCGTGGTTTGATACCCATCATGGAAGGGGGTGGAGACCGCTTATTTGTTACCAGAGA 471
                      ********** ****** ******************************************

consensus_6026#0      AGAAATGCAAGGCGTGGAGGTGTGGGAGACCTCCCAGCTGGCTGGTGCTATCTCTCTATC 1440
consensus_6026#1      AAAAATGCAAGGCGTGGAGGTGTGGGAGACCTCCCAGCTGGCTGGTGCTATCTCTCTATC 531
                      * **********************************************************

consensus_6026#0      TCTTAGCAGTTTGCTTGTCTGAACATGATTGACCTGTGGCAATTCAGGTGGTTCTATTAA 1500
consensus_6026#1      TTTTAGCAGTTTACTTGTTTGAACATGATTGACCTGTGGCAATTCAGGTGGTTTTATTAA 591
                      * ********** ***** ********************************** ******

consensus_6026#0      ACGTGAGTGTGCATTTTCTACCATAGCATCGCATTATTCAGTACTGAAAATTCCTCTCAA 1560
consensus_6026#1      AAAAAAAAAAAAAAAAAAAAAAA------------------------------------- 614
                      *    *      *      *  *                                     

consensus_6026#0      GTCATGATGCGGTAATGTTATAATTCTTGCTTCTGCATCTGTATTTTGTGGTGATCAAAT 1620
consensus_6026#1      ------------------------------------------------------------
                                                                                  

consensus_6026#0      CCCTTGGATGTTGGTAAGCTTATTTCATAT 1650
consensus_6026#1      ------------------------------
                                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)