These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6026#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1650 fasta sequence [GTGAGAGCAAGCATCAATGGAAGCCGCCGGTGGCGGCGGCCGGCGCGGCACGGTGAAGCAGCTCAACGTGGGCGGCAAGCTCTTCGCCTTGGAGGCAAGCTCCCTCCCGATCTCCCTCTCTCTCTCGCCTTCCCCAAACCCAATCTTCGTGGACCGCGACCCCGCCCTTCTCTCCGCGATCCTCTCCGCCATCCGCGCCCCCTCCGCCGCGCCCGCCTTCCCCGCCGGCGTCCTCCTCGACGAGGCCCACTCCTACGGCCTCCAAGACCAGCTCCTCGCCGCCCTCTCCCCTCCGCCCCTCCTCGGCTTCTCCGCCTCCCGCGCCTCCACGCTCTCCCCGCCCTCCGAGCCCTTCCCCACCGCGCTCGCCCAGCGCCACGATGGCTCGCTCTGCCTCGCCCATGGCGCCGGCCTGCTCACCCACTACTCCCCTGCGCTGGAGCACCTCACCACCTTCCGGACCCATCTCCACCGCATCACCTCCCTCCGGCAGCTGCCTCCTGGCCTCGCTGTTGCCGGGTCCAGCCTCTCCCCGGGGCTCCATGTGTACGACCTCCTCAAAGGTCGGCACGTCGCCTCTGTCCAATGGTCAGATCCCACCGACCTTCGCGTTCAAAAGGCCAAGGTGATTGCCATTGCCGCCCGTCCTGCTGCCGATGCAGCTGATAAGAATTCACCCATCTTAGCTACATTCGAGTGCCCACACCGGGAGAATTGCATCCTGGTGTTTGACCCTGTAACTCTAAAGCCCATTCAAGAGATTGGCCGGCAAACTGGCAGCGCAGCTAAGTCGTCGGCGCCAGGCCGAGTAGTGCACCTGCAGGAGCTTGGGCTGGTATTTGCGGCATCTGTGAGCTCGGGGGCATTTGGTTACTCTGGGTACATGAGGCTGTGGGACATTCGTTCTGGGGATGTGGTGTGGGAAACAAGCGAGCCAGGGGGAGTTGGAAGAAGCAGCCGGTTTGGAGATCCATTTGCAGATGTGGATGTTGACGTTAAGCAACGGATACTATACAAGGTGTGCTCAAAGTCAGGAGATATTGGAGCCGCTGACTTGAGATGCCTTGGTAAAGACCCTTGGGTTTATATGTCGTCAGGACCTAGAGGGAGTGGAGGGGGCCATGGCAGTGTTCTGCATTGCTACAAGTCTCAGGTGTTTGTCAGCCGGAAGGATGGATTGGAGGTTTGGTCTCGACTGGAAGAACAGAGCAATGGCACAGCCAACTTGGCGGAGCAAACGAGAGCAAAGGAAAACATCAACAACGAAGGAATAAACGAGAACTGTTTTAGGAGTTG-CTATGTGGATACAGAAGAGGATGCTGACCGTGGTATGATACACATCATGGAAGGGGGTGGAGACCGCTTATTTGTTACCAGAGAAGAAATGCAAGGCGTGGAGGTGTGGGAGACCTCCCAGCTGGCTGGTGCTATCTCTCTATCTCTTAGCAGTTTGCTTGTCTGAACATGATTGACCTGTGGCAATTCAGGTGGTTCTATTAAACGTGAGTGTGCATTTTCTACCATAGCATCGCATTATTCAGTACTGAAAATTCCTCTCAAGTCATGATGCGGTAATGTTATAATTCTTGCTTCTGCATCTGTATTTTGTGGTGATCAAATCCCTTGGATGTTGGTAAGCTTATTTCATAT] [+] EMBL AK111791 [GTGAGAGCAAGCATCAATGGAAGCCGCCGGTGGCGGCGGCCGGCGCGGCACGGTGAAGCAGCTCAACGTGGGCGGCAAGCTCTTCGCCTTGGAGGCAAGCTCCCTCCCGATCTCCCTCTCTCTCTCGCCTTCCCCAAACCCAATCTTCGTGGACCGCGACCCCGCCCTTCTCTCCGCGATCCTCTCCGCCATCCGCGCCCCCTCCGCCGCGCCCGCCTTCCCCGCCGGCGTCCTCCTCGACGAGGCCCACTCCTACGGCCTCCAAGACCAGCTCCTCGCCGCCCTCTCCCCTCCGCCCCTCCTCGGCTTCTCCGCCTCCCGCGCCTCCACGCTCTCCCCGCCCTCCGAGCCCTTCCCCACCGCGCTCGCCCAGCGCCACGATGGCTCGCTCTGCCTCGCCCATGGCGCCGGCCTGCTCACCCACTACTCCCCTGCGCTGGAGCACCTCACCACCTTCCGGACCCATCTCCACCGCATCACCTCCCTCCGGCAGCTGCCTCCTGGCCTCGCTGTTGCCGGGTCCAGCCTCTCCCCGGGGCTCCATGTGTACGACCTCCTCAAAGGTCGGCACGTCGCCTCTGTCCAATGGTCAGATCCCACCGACCTTCGCGTTCAAAAGGCCAAGGTGATTGCCATTGCCGCCCGTCCTGCTGCCGATGCAGCTGATAAGAATTCACCCATCTTAGCTACATTCGAGTGCCCACACCGGGAGAATTGCATCCTGGTGTTTGACCCTGTAACTCTAAAGCCCATTCAAGAGATTGGCCGGCAAACTGGCAGCGCAGCTAAGTCGTCGGCGCCAGGCCGAGTAGTGCACCTGCAGGAGCTTGGGCTGGTATTTGCGGCATCTGTGAGCTCGGGGGCATTTGGTTACTCTGGGTACATGAGGCTGTGGGACATTCGTTCTGGGGATGTGGTGTGGGAAACAAGCGAGCCAGGGGGAGTTGGAAGAAGCAGCCGGTTTGGAGATCCATTTGCAGATGTGGATGTTGACGTTAAGCAACGGATACTATACAAGGTGTGCTCAAAGTCAGGAGATATTGGAGCCGCTGACTTGAGATGCCTTGGTAAAGACCCTTGGGTTTATATGTCGTCAGGACCTAGAGGGAGTGGAGGGGGCCATGGCAGTGTTCTGCATTGCTACAAGTCTCAGGTGTTTGTCAGCCGGAAGGATGGATTGGAGGTTTGGTCTCGACTGGAAGAACAGAGCAATGGCACAGCCAACTTGGCGGAGCAAACGAGAGCAAAGGAAAACATCAACAACGAAGGAATAAACGAGAACTGTTTTAGGAGTTG CTATGTGGATACAGAAGAGGATGCTGACCGTGGTATGATACACATCATGGAAGGGGGTGGAGACCGCTTATTTGTTACCAGAGAAGAAATGCAAGGCGTGGAGGTGTGGGAGACCTCCCAGCTGGCTGGTGCTATCTCTCTATCTCTTAGCAGTTTGCTTGTCTGAACATGATTGACCTGTGGCAATTCAGGTGGTTCTATTAAACGTGAGTGTGCATTTTCTACCATAGCATCGCATTATTCAGTACTGAAAATTCCTCTCAAGTCATGATGCGGTAATGTTATAATTCTTGCTTCTGCATCTGTATTTTGTGGTGATCAAATCCCTTGGATGTTGGTAAGCTTATTTCATAT] [+] EMBL AA749832 [ GAGAACTGTTTTAGGAGTTGCCTATGTGGATACAGAAGAAGATGCTGACCGTGGTATGATACACATCATGGAAGGGGGTGGAGACCGCTTATTTGTTACCAGAGAAGAAATGCAAGGCGTGGTGG GTGGGAGACCTCCCAGCTGGCTGGTGCTATCTCTCTATCTCTTAGCAGTTTACTTGTCTGAACTAGATTGACTTG GGCA TCAG ] consensusID : consensus_6026#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence [GAGACAAGGGGGGGAAACAAGCGAGCCAGGGGGAGTTGGAAGAAGCAGCCGGTTTGGAGATCCATTTGCAGATGTGGATGTTGACGTTAAGCAACAGATACTATACAAGGTGTGCTCAAAGTCAGGAGATATTGGAGCCGCTGACCTGAGATGCCTTGGTAAAGACCCTTGGGTTTATATGTCGTCAGGACCTAGAGGGAGTGGAGGGGGCCATGGCAGTGTTTTGCATTGCTACAAGTCGCAGGTGTTTGTCACCCGGAAGGATGGATTGGAGGTTTGGTCTCGACTGGAAGAACAGAGCAATGGCCCAGCCAACTTGGCGGAGCAAACGAGAGCAAAGGAAAACATCACCAACGAAGGAATAAACGAGAACTGTTTTTGGAGTTGCTATGTGGATACAGAAAAAAATGCTGACCGTGGTTTGATACCCATCATGGAAGGGGGTGGAGACCGCTTATTTGTTACCAGAGAAAAAATGCAAGGCGTGGAGGTGTGGGAGACCTCCCAGCTGGCTGGTGCTATCTCTCTATCTTTTAGCAGTTTACTTGTTTGAACATGATTGACCTGTGGCAATTCAGGTGGTTTTATTAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA762225 [GAGACAAGGGGGGGAAACAAGCGAGCCAGGGGGAGTTGGAAGAAGCAGCCGGTTTGGAGATCCATTTGCAGATGTGGATGTTGACGTTAAGCAACAGATACTATACAAGGTGTGCTCAAAGTCAGGAGATATTGGAGCCGCTGACCTGAGATGCCTTGGTAAAGACCCTTGGGTTTATATGTCGTCAGGACCTAGAGGGAGTGGAGGGGGCCATGGCAGTGTTTTGCATTGCTACAAGTCGCAGGTGTTTGTCACCCGGAAGGATGGATTGGAGGTTTGGTCTCGACTGGAAGAACAGAGCAATGGCCCAGCCAACTTGGCGGAGCAAACGAGAGCAAAGGAAAACATCACCAACGAAGGAATAAACGAGAACTGTTTTTGGAGTTGCTATGTGGATACAGAAAAAAATGCTGACCGTGGTTTGATACCCATCATGGAAGGGGGTGGAGACCGCTTATTTGTTACCAGAGAAAAAATGCAAGGCGTGGAGGTGTGGGAGACCTCCCAGCTGGCTGGTGCTATCTCTCTATCTTTTAGCAGTTTACTTGTTTGAACATGATTGACCTGTGGCAATTCAGGTGGTTTTATTAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6026#0 GTGAGAGCAAGCATCAATGGAAGCCGCCGGTGGCGGCGGCCGGCGCGGCACGGTGAAGCA 60 consensus_6026#1 ------------------------------------------------------------ consensus_6026#0 GCTCAACGTGGGCGGCAAGCTCTTCGCCTTGGAGGCAAGCTCCCTCCCGATCTCCCTCTC 120 consensus_6026#1 ------------------------------------------------------------ consensus_6026#0 TCTCTCGCCTTCCCCAAACCCAATCTTCGTGGACCGCGACCCCGCCCTTCTCTCCGCGAT 180 consensus_6026#1 ------------------------------------------------------------ consensus_6026#0 CCTCTCCGCCATCCGCGCCCCCTCCGCCGCGCCCGCCTTCCCCGCCGGCGTCCTCCTCGA 240 consensus_6026#1 ------------------------------------------------------------ consensus_6026#0 CGAGGCCCACTCCTACGGCCTCCAAGACCAGCTCCTCGCCGCCCTCTCCCCTCCGCCCCT 300 consensus_6026#1 ------------------------------------------------------------ consensus_6026#0 CCTCGGCTTCTCCGCCTCCCGCGCCTCCACGCTCTCCCCGCCCTCCGAGCCCTTCCCCAC 360 consensus_6026#1 ------------------------------------------------------------ consensus_6026#0 CGCGCTCGCCCAGCGCCACGATGGCTCGCTCTGCCTCGCCCATGGCGCCGGCCTGCTCAC 420 consensus_6026#1 ------------------------------------------------------------ consensus_6026#0 CCACTACTCCCCTGCGCTGGAGCACCTCACCACCTTCCGGACCCATCTCCACCGCATCAC 480 consensus_6026#1 ------------------------------------------------------------ consensus_6026#0 CTCCCTCCGGCAGCTGCCTCCTGGCCTCGCTGTTGCCGGGTCCAGCCTCTCCCCGGGGCT 540 consensus_6026#1 ------------------------------------------------------------ consensus_6026#0 CCATGTGTACGACCTCCTCAAAGGTCGGCACGTCGCCTCTGTCCAATGGTCAGATCCCAC 600 consensus_6026#1 ------------------------------------------------------------ consensus_6026#0 CGACCTTCGCGTTCAAAAGGCCAAGGTGATTGCCATTGCCGCCCGTCCTGCTGCCGATGC 660 consensus_6026#1 ------------------------------------------------------------ consensus_6026#0 AGCTGATAAGAATTCACCCATCTTAGCTACATTCGAGTGCCCACACCGGGAGAATTGCAT 720 consensus_6026#1 ------------------------------------------------------------ consensus_6026#0 CCTGGTGTTTGACCCTGTAACTCTAAAGCCCATTCAAGAGATTGGCCGGCAAACTGGCAG 780 consensus_6026#1 ------------------------------------------------------------ consensus_6026#0 CGCAGCTAAGTCGTCGGCGCCAGGCCGAGTAGTGCACCTGCAGGAGCTTGGGCTGGTATT 840 consensus_6026#1 ------------------------------------------------------------ consensus_6026#0 TGCGGCATCTGTGAGCTCGGGGGCATTTGGTTACTCTGGGTACATGAGGCTGTGGGACAT 900 consensus_6026#1 ------------------------------------------------------------ consensus_6026#0 TCGTTCTGGGGATGTGGTGTGGGAAACAAGCGAGCCAGGGGGAGTTGGAAGAAGCAGCCG 960 consensus_6026#1 --------GAGACAAGG-GGGGGAAACAAGCGAGCCAGGGGGAGTTGGAAGAAGCAGCCG 51 * ** ** * **************************************** consensus_6026#0 GTTTGGAGATCCATTTGCAGATGTGGATGTTGACGTTAAGCAACGGATACTATACAAGGT 1020 consensus_6026#1 GTTTGGAGATCCATTTGCAGATGTGGATGTTGACGTTAAGCAACAGATACTATACAAGGT 111 ******************************************** *************** consensus_6026#0 GTGCTCAAAGTCAGGAGATATTGGAGCCGCTGACTTGAGATGCCTTGGTAAAGACCCTTG 1080 consensus_6026#1 GTGCTCAAAGTCAGGAGATATTGGAGCCGCTGACCTGAGATGCCTTGGTAAAGACCCTTG 171 ********************************** ************************* consensus_6026#0 GGTTTATATGTCGTCAGGACCTAGAGGGAGTGGAGGGGGCCATGGCAGTGTTCTGCATTG 1140 consensus_6026#1 GGTTTATATGTCGTCAGGACCTAGAGGGAGTGGAGGGGGCCATGGCAGTGTTTTGCATTG 231 **************************************************** ******* consensus_6026#0 CTACAAGTCTCAGGTGTTTGTCAGCCGGAAGGATGGATTGGAGGTTTGGTCTCGACTGGA 1200 consensus_6026#1 CTACAAGTCGCAGGTGTTTGTCACCCGGAAGGATGGATTGGAGGTTTGGTCTCGACTGGA 291 ********* ************* ************************************ consensus_6026#0 AGAACAGAGCAATGGCACAGCCAACTTGGCGGAGCAAACGAGAGCAAAGGAAAACATCAA 1260 consensus_6026#1 AGAACAGAGCAATGGCCCAGCCAACTTGGCGGAGCAAACGAGAGCAAAGGAAAACATCAC 351 **************** ****************************************** consensus_6026#0 CAACGAAGGAATAAACGAGAACTGTTTTAGGAGTTGCTATGTGGATACAGAAGAGGATGC 1320 consensus_6026#1 CAACGAAGGAATAAACGAGAACTGTTTTTGGAGTTGCTATGTGGATACAGAAAAAAATGC 411 **************************** *********************** * **** consensus_6026#0 TGACCGTGGTATGATACACATCATGGAAGGGGGTGGAGACCGCTTATTTGTTACCAGAGA 1380 consensus_6026#1 TGACCGTGGTTTGATACCCATCATGGAAGGGGGTGGAGACCGCTTATTTGTTACCAGAGA 471 ********** ****** ****************************************** consensus_6026#0 AGAAATGCAAGGCGTGGAGGTGTGGGAGACCTCCCAGCTGGCTGGTGCTATCTCTCTATC 1440 consensus_6026#1 AAAAATGCAAGGCGTGGAGGTGTGGGAGACCTCCCAGCTGGCTGGTGCTATCTCTCTATC 531 * ********************************************************** consensus_6026#0 TCTTAGCAGTTTGCTTGTCTGAACATGATTGACCTGTGGCAATTCAGGTGGTTCTATTAA 1500 consensus_6026#1 TTTTAGCAGTTTACTTGTTTGAACATGATTGACCTGTGGCAATTCAGGTGGTTTTATTAA 591 * ********** ***** ********************************** ****** consensus_6026#0 ACGTGAGTGTGCATTTTCTACCATAGCATCGCATTATTCAGTACTGAAAATTCCTCTCAA 1560 consensus_6026#1 AAAAAAAAAAAAAAAAAAAAAAA------------------------------------- 614 * * * * * consensus_6026#0 GTCATGATGCGGTAATGTTATAATTCTTGCTTCTGCATCTGTATTTTGTGGTGATCAAAT 1620 consensus_6026#1 ------------------------------------------------------------ consensus_6026#0 CCCTTGGATGTTGGTAAGCTTATTTCATAT 1650 consensus_6026#1 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||