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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6026#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1650 fasta sequence
[GTGAGAGCAAGCATCAATGGAAGCCGCCGGTGGCGGCGGCCGGCGCGGCACGGTGAAGCAGCTCAACGTGGGCGGCAAGCTCTTCGCCTTGGAGGCAAGCTCCCTCCCGATCTCCCTCTCTCTCTCGCCTTCCCCAAACCCAATCTTCGTGGACCGCGACCCCGCCCTTCTCTCCGCGATCCTCTCCGCCATCCGCGCCCCCTCCGCCGCGCCCGCCTTCCCCGCCGGCGTCCTCCTCGACGAGGCCCACTCCTACGGCCTCCAAGACCAGCTCCTCGCCGCCCTCTCCCCTCCGCCCCTCCTCGGCTTCTCCGCCTCCCGCGCCTCCACGCTCTCCCCGCCCTCCGAGCCCTTCCCCACCGCGCTCGCCCAGCGCCACGATGGCTCGCTCTGCCTCGCCCATGGCGCCGGCCTGCTCACCCACTACTCCCCTGCGCTGGAGCACCTCACCACCTTCCGGACCCATCTCCACCGCATCACCTCCCTCCGGCAGCTGCCTCCTGGCCTCGCTGTTGCCGGGTCCAGCCTCTCCCCGGGGCTCCATGTGTACGACCTCCTCAAAGGTCGGCACGTCGCCTCTGTCCAATGGTCAGATCCCACCGACCTTCGCGTTCAAAAGGCCAAGGTGATTGCCATTGCCGCCCGTCCTGCTGCCGATGCAGCTGATAAGAATTCACCCATCTTAGCTACATTCGAGTGCCCACACCGGGAGAATTGCATCCTGGTGTTTGACCCTGTAACTCTAAAGCCCATTCAAGAGATTGGCCGGCAAACTGGCAGCGCAGCTAAGTCGTCGGCGCCAGGCCGAGTAGTGCACCTGCAGGAGCTTGGGCTGGTATTTGCGGCATCTGTGAGCTCGGGGGCATTTGGTTACTCTGGGTACATGAGGCTGTGGGACATTCGTTCTGGGGATGTGGTGTGGGAAACAAGCGAGCCAGGGGGAGTTGGAAGAAGCAGCCGGTTTGGAGATCCATTTGCAGATGTGGATGTTGACGTTAAGCAACGGATACTATACAAGGTGTGCTCAAAGTCAGGAGATATTGGAGCCGCTGACTTGAGATGCCTTGGTAAAGACCCTTGGGTTTATATGTCGTCAGGACCTAGAGGGAGTGGAGGGGGCCATGGCAGTGTTCTGCATTGCTACAAGTCTCAGGTGTTTGTCAGCCGGAAGGATGGATTGGAGGTTTGGTCTCGACTGGAAGAACAGAGCAATGGCACAGCCAACTTGGCGGAGCAAACGAGAGCAAAGGAAAACATCAACAACGAAGGAATAAACGAGAACTGTTTTAGGAGTTG-CTATGTGGATACAGAAGAGGATGCTGACCGTGGTATGATACACATCATGGAAGGGGGTGGAGACCGCTTATTTGTTACCAGAGAAGAAATGCAAGGCGTGGAGGTGTGGGAGACCTCCCAGCTGGCTGGTGCTATCTCTCTATCTCTTAGCAGTTTGCTTGTCTGAACATGATTGACCTGTGGCAATTCAGGTGGTTCTATTAAACGTGAGTGTGCATTTTCTACCATAGCATCGCATTATTCAGTACTGAAAATTCCTCTCAAGTCATGATGCGGTAATGTTATAATTCTTGCTTCTGCATCTGTATTTTGTGGTGATCAAATCCCTTGGATGTTGGTAAGCTTATTTCATAT]
[+] EMBL AK111791 [GTGAGAGCAAGCATCAATGGAAGCCGCCGGTGGCGGCGGCCGGCGCGGCACGGTGAAGCAGCTCAACGTGGGCGGCAAGCTCTTCGCCTTGGAGGCAAGCTCCCTCCCGATCTCCCTCTCTCTCTCGCCTTCCCCAAACCCAATCTTCGTGGACCGCGACCCCGCCCTTCTCTCCGCGATCCTCTCCGCCATCCGCGCCCCCTCCGCCGCGCCCGCCTTCCCCGCCGGCGTCCTCCTCGACGAGGCCCACTCCTACGGCCTCCAAGACCAGCTCCTCGCCGCCCTCTCCCCTCCGCCCCTCCTCGGCTTCTCCGCCTCCCGCGCCTCCACGCTCTCCCCGCCCTCCGAGCCCTTCCCCACCGCGCTCGCCCAGCGCCACGATGGCTCGCTCTGCCTCGCCCATGGCGCCGGCCTGCTCACCCACTACTCCCCTGCGCTGGAGCACCTCACCACCTTCCGGACCCATCTCCACCGCATCACCTCCCTCCGGCAGCTGCCTCCTGGCCTCGCTGTTGCCGGGTCCAGCCTCTCCCCGGGGCTCCATGTGTACGACCTCCTCAAAGGTCGGCACGTCGCCTCTGTCCAATGGTCAGATCCCACCGACCTTCGCGTTCAAAAGGCCAAGGTGATTGCCATTGCCGCCCGTCCTGCTGCCGATGCAGCTGATAAGAATTCACCCATCTTAGCTACATTCGAGTGCCCACACCGGGAGAATTGCATCCTGGTGTTTGACCCTGTAACTCTAAAGCCCATTCAAGAGATTGGCCGGCAAACTGGCAGCGCAGCTAAGTCGTCGGCGCCAGGCCGAGTAGTGCACCTGCAGGAGCTTGGGCTGGTATTTGCGGCATCTGTGAGCTCGGGGGCATTTGGTTACTCTGGGTACATGAGGCTGTGGGACATTCGTTCTGGGGATGTGGTGTGGGAAACAAGCGAGCCAGGGGGAGTTGGAAGAAGCAGCCGGTTTGGAGATCCATTTGCAGATGTGGATGTTGACGTTAAGCAACGGATACTATACAAGGTGTGCTCAAAGTCAGGAGATATTGGAGCCGCTGACTTGAGATGCCTTGGTAAAGACCCTTGGGTTTATATGTCGTCAGGACCTAGAGGGAGTGGAGGGGGCCATGGCAGTGTTCTGCATTGCTACAAGTCTCAGGTGTTTGTCAGCCGGAAGGATGGATTGGAGGTTTGGTCTCGACTGGAAGAACAGAGCAATGGCACAGCCAACTTGGCGGAGCAAACGAGAGCAAAGGAAAACATCAACAACGAAGGAATAAACGAGAACTGTTTTAGGAGTTG CTATGTGGATACAGAAGAGGATGCTGACCGTGGTATGATACACATCATGGAAGGGGGTGGAGACCGCTTATTTGTTACCAGAGAAGAAATGCAAGGCGTGGAGGTGTGGGAGACCTCCCAGCTGGCTGGTGCTATCTCTCTATCTCTTAGCAGTTTGCTTGTCTGAACATGATTGACCTGTGGCAATTCAGGTGGTTCTATTAAACGTGAGTGTGCATTTTCTACCATAGCATCGCATTATTCAGTACTGAAAATTCCTCTCAAGTCATGATGCGGTAATGTTATAATTCTTGCTTCTGCATCTGTATTTTGTGGTGATCAAATCCCTTGGATGTTGGTAAGCTTATTTCATAT]
[+] EMBL AA749832 [ GAGAACTGTTTTAGGAGTTGCCTATGTGGATACAGAAGAAGATGCTGACCGTGGTATGATACACATCATGGAAGGGGGTGGAGACCGCTTATTTGTTACCAGAGAAGAAATGCAAGGCGTGGTGG GTGGGAGACCTCCCAGCTGGCTGGTGCTATCTCTCTATCTCTTAGCAGTTTACTTGTCTGAACTAGATTGACTTG GGCA TCAG ]
consensusID : consensus_6026#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence
[GAGACAAGGGGGGGAAACAAGCGAGCCAGGGGGAGTTGGAAGAAGCAGCCGGTTTGGAGATCCATTTGCAGATGTGGATGTTGACGTTAAGCAACAGATACTATACAAGGTGTGCTCAAAGTCAGGAGATATTGGAGCCGCTGACCTGAGATGCCTTGGTAAAGACCCTTGGGTTTATATGTCGTCAGGACCTAGAGGGAGTGGAGGGGGCCATGGCAGTGTTTTGCATTGCTACAAGTCGCAGGTGTTTGTCACCCGGAAGGATGGATTGGAGGTTTGGTCTCGACTGGAAGAACAGAGCAATGGCCCAGCCAACTTGGCGGAGCAAACGAGAGCAAAGGAAAACATCACCAACGAAGGAATAAACGAGAACTGTTTTTGGAGTTGCTATGTGGATACAGAAAAAAATGCTGACCGTGGTTTGATACCCATCATGGAAGGGGGTGGAGACCGCTTATTTGTTACCAGAGAAAAAATGCAAGGCGTGGAGGTGTGGGAGACCTCCCAGCTGGCTGGTGCTATCTCTCTATCTTTTAGCAGTTTACTTGTTTGAACATGATTGACCTGTGGCAATTCAGGTGGTTTTATTAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA762225 [GAGACAAGGGGGGGAAACAAGCGAGCCAGGGGGAGTTGGAAGAAGCAGCCGGTTTGGAGATCCATTTGCAGATGTGGATGTTGACGTTAAGCAACAGATACTATACAAGGTGTGCTCAAAGTCAGGAGATATTGGAGCCGCTGACCTGAGATGCCTTGGTAAAGACCCTTGGGTTTATATGTCGTCAGGACCTAGAGGGAGTGGAGGGGGCCATGGCAGTGTTTTGCATTGCTACAAGTCGCAGGTGTTTGTCACCCGGAAGGATGGATTGGAGGTTTGGTCTCGACTGGAAGAACAGAGCAATGGCCCAGCCAACTTGGCGGAGCAAACGAGAGCAAAGGAAAACATCACCAACGAAGGAATAAACGAGAACTGTTTTTGGAGTTGCTATGTGGATACAGAAAAAAATGCTGACCGTGGTTTGATACCCATCATGGAAGGGGGTGGAGACCGCTTATTTGTTACCAGAGAAAAAATGCAAGGCGTGGAGGTGTGGGAGACCTCCCAGCTGGCTGGTGCTATCTCTCTATCTTTTAGCAGTTTACTTGTTTGAACATGATTGACCTGTGGCAATTCAGGTGGTTTTATTAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6026#0 GTGAGAGCAAGCATCAATGGAAGCCGCCGGTGGCGGCGGCCGGCGCGGCACGGTGAAGCA 60
consensus_6026#1 ------------------------------------------------------------
consensus_6026#0 GCTCAACGTGGGCGGCAAGCTCTTCGCCTTGGAGGCAAGCTCCCTCCCGATCTCCCTCTC 120
consensus_6026#1 ------------------------------------------------------------
consensus_6026#0 TCTCTCGCCTTCCCCAAACCCAATCTTCGTGGACCGCGACCCCGCCCTTCTCTCCGCGAT 180
consensus_6026#1 ------------------------------------------------------------
consensus_6026#0 CCTCTCCGCCATCCGCGCCCCCTCCGCCGCGCCCGCCTTCCCCGCCGGCGTCCTCCTCGA 240
consensus_6026#1 ------------------------------------------------------------
consensus_6026#0 CGAGGCCCACTCCTACGGCCTCCAAGACCAGCTCCTCGCCGCCCTCTCCCCTCCGCCCCT 300
consensus_6026#1 ------------------------------------------------------------
consensus_6026#0 CCTCGGCTTCTCCGCCTCCCGCGCCTCCACGCTCTCCCCGCCCTCCGAGCCCTTCCCCAC 360
consensus_6026#1 ------------------------------------------------------------
consensus_6026#0 CGCGCTCGCCCAGCGCCACGATGGCTCGCTCTGCCTCGCCCATGGCGCCGGCCTGCTCAC 420
consensus_6026#1 ------------------------------------------------------------
consensus_6026#0 CCACTACTCCCCTGCGCTGGAGCACCTCACCACCTTCCGGACCCATCTCCACCGCATCAC 480
consensus_6026#1 ------------------------------------------------------------
consensus_6026#0 CTCCCTCCGGCAGCTGCCTCCTGGCCTCGCTGTTGCCGGGTCCAGCCTCTCCCCGGGGCT 540
consensus_6026#1 ------------------------------------------------------------
consensus_6026#0 CCATGTGTACGACCTCCTCAAAGGTCGGCACGTCGCCTCTGTCCAATGGTCAGATCCCAC 600
consensus_6026#1 ------------------------------------------------------------
consensus_6026#0 CGACCTTCGCGTTCAAAAGGCCAAGGTGATTGCCATTGCCGCCCGTCCTGCTGCCGATGC 660
consensus_6026#1 ------------------------------------------------------------
consensus_6026#0 AGCTGATAAGAATTCACCCATCTTAGCTACATTCGAGTGCCCACACCGGGAGAATTGCAT 720
consensus_6026#1 ------------------------------------------------------------
consensus_6026#0 CCTGGTGTTTGACCCTGTAACTCTAAAGCCCATTCAAGAGATTGGCCGGCAAACTGGCAG 780
consensus_6026#1 ------------------------------------------------------------
consensus_6026#0 CGCAGCTAAGTCGTCGGCGCCAGGCCGAGTAGTGCACCTGCAGGAGCTTGGGCTGGTATT 840
consensus_6026#1 ------------------------------------------------------------
consensus_6026#0 TGCGGCATCTGTGAGCTCGGGGGCATTTGGTTACTCTGGGTACATGAGGCTGTGGGACAT 900
consensus_6026#1 ------------------------------------------------------------
consensus_6026#0 TCGTTCTGGGGATGTGGTGTGGGAAACAAGCGAGCCAGGGGGAGTTGGAAGAAGCAGCCG 960
consensus_6026#1 --------GAGACAAGG-GGGGGAAACAAGCGAGCCAGGGGGAGTTGGAAGAAGCAGCCG 51
* ** ** * ****************************************
consensus_6026#0 GTTTGGAGATCCATTTGCAGATGTGGATGTTGACGTTAAGCAACGGATACTATACAAGGT 1020
consensus_6026#1 GTTTGGAGATCCATTTGCAGATGTGGATGTTGACGTTAAGCAACAGATACTATACAAGGT 111
******************************************** ***************
consensus_6026#0 GTGCTCAAAGTCAGGAGATATTGGAGCCGCTGACTTGAGATGCCTTGGTAAAGACCCTTG 1080
consensus_6026#1 GTGCTCAAAGTCAGGAGATATTGGAGCCGCTGACCTGAGATGCCTTGGTAAAGACCCTTG 171
********************************** *************************
consensus_6026#0 GGTTTATATGTCGTCAGGACCTAGAGGGAGTGGAGGGGGCCATGGCAGTGTTCTGCATTG 1140
consensus_6026#1 GGTTTATATGTCGTCAGGACCTAGAGGGAGTGGAGGGGGCCATGGCAGTGTTTTGCATTG 231
**************************************************** *******
consensus_6026#0 CTACAAGTCTCAGGTGTTTGTCAGCCGGAAGGATGGATTGGAGGTTTGGTCTCGACTGGA 1200
consensus_6026#1 CTACAAGTCGCAGGTGTTTGTCACCCGGAAGGATGGATTGGAGGTTTGGTCTCGACTGGA 291
********* ************* ************************************
consensus_6026#0 AGAACAGAGCAATGGCACAGCCAACTTGGCGGAGCAAACGAGAGCAAAGGAAAACATCAA 1260
consensus_6026#1 AGAACAGAGCAATGGCCCAGCCAACTTGGCGGAGCAAACGAGAGCAAAGGAAAACATCAC 351
**************** ******************************************
consensus_6026#0 CAACGAAGGAATAAACGAGAACTGTTTTAGGAGTTGCTATGTGGATACAGAAGAGGATGC 1320
consensus_6026#1 CAACGAAGGAATAAACGAGAACTGTTTTTGGAGTTGCTATGTGGATACAGAAAAAAATGC 411
**************************** *********************** * ****
consensus_6026#0 TGACCGTGGTATGATACACATCATGGAAGGGGGTGGAGACCGCTTATTTGTTACCAGAGA 1380
consensus_6026#1 TGACCGTGGTTTGATACCCATCATGGAAGGGGGTGGAGACCGCTTATTTGTTACCAGAGA 471
********** ****** ******************************************
consensus_6026#0 AGAAATGCAAGGCGTGGAGGTGTGGGAGACCTCCCAGCTGGCTGGTGCTATCTCTCTATC 1440
consensus_6026#1 AAAAATGCAAGGCGTGGAGGTGTGGGAGACCTCCCAGCTGGCTGGTGCTATCTCTCTATC 531
* **********************************************************
consensus_6026#0 TCTTAGCAGTTTGCTTGTCTGAACATGATTGACCTGTGGCAATTCAGGTGGTTCTATTAA 1500
consensus_6026#1 TTTTAGCAGTTTACTTGTTTGAACATGATTGACCTGTGGCAATTCAGGTGGTTTTATTAA 591
* ********** ***** ********************************** ******
consensus_6026#0 ACGTGAGTGTGCATTTTCTACCATAGCATCGCATTATTCAGTACTGAAAATTCCTCTCAA 1560
consensus_6026#1 AAAAAAAAAAAAAAAAAAAAAAA------------------------------------- 614
* * * * *
consensus_6026#0 GTCATGATGCGGTAATGTTATAATTCTTGCTTCTGCATCTGTATTTTGTGGTGATCAAAT 1620
consensus_6026#1 ------------------------------------------------------------
consensus_6026#0 CCCTTGGATGTTGGTAAGCTTATTTCATAT 1650
consensus_6026#1 ------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||