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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6027#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1201 fasta sequence
[CCCACCGGGTGGCGGGGCCGCAGAATCCGGCAAAGCGGCGGCGACGGCGAGGGGATCGGGCGCGGACGCGGAGAGGAGAGAGACAGCGATGGCCGCCGCCCGTGGTTGCCTCGCCTCTCGAGCCTACATAAGGGGGCGCGCGGCGCATCTCCGGGCTTCGGCGCGTCGGATTGGGAGGTCGGGATTGGGAGGAGGATGGGGAGGCGGGGGCGGGTGGTGCTGCGGCGGATCGAGGACCGGGTGCGGCGCGGGATCTGCTTCCGGAAGAGGCTCGCCGGGCTGGAGAAGAAGGTGGAGGAGCTCGCCGTGCTCTGCGACGCCCACGTCGGCTTCGTCGTCCTCTCCTGCTCCGGCGACGACGCCAACCCCCACCACTTCGCCGCGCCCGCCACTATTGAAAACATTGTGGAACGTTATGAGCACTCTCAAGCAGCACAAAAAGGAGTACATGGCAGGTGCATTCTGCAAAAGAGGAAGAGCAAGGATTTTCAAGTTCTCAAGGAAACAATAGATAAAGGACCAATCAATGATGACATGCGACCTATTGATGAAAAAGACATATCCACATTAAACATGGACCAGATTAGCCAAATTGAAATATTATTGGAAGATGAACTGAGGTGGACAAGGGCAAGAAAGGTGGTGGCAGATAGAATTGCCAGGTTGCAGAACAAGGTACAGAAGAACCCGGCGACTGCTGAGACAGAAAGCAACTCCCCTGAGATGCCCTCTGATCATGAGAAGAAACAGGTAGCAGGAGGAAGCCAGCAGAGCGCCGAGGAGGAGGAGGAGGAGATGGAGGTGGTGCTCAGGCACCGCCTGAGCCTGGGCACCGGCGACCGTGACGATGGTGGCGGTGGCGCGGCGGAGCAACGGCACCGGACGACGCCGCCGCCGGCGGTCGACCTCAACGTGCCGTGCCGGGACGCGGGTCAGCTGCAGTAGACGTGGACAAAACACCATTTGTTGCAGCACAGCAATCCGAGCCCATAACACAGCGTAGTAGTAACAGTTTACAGCCGTAAACAATGTTTCGAAGTTATACTGTTGCTGGGAAGTTACTGTGCTAATAATTTTACTACTGTAGCGGTTCATGCCGAGGGACGCTGTGTGTGTCCGTACGTATCCGTATATATATTAATAAGGCTGGCTGTGCCTGCAAATTACTGCTAATGTGAAGGGCATGCGAAAGAAGACGCAT]
[+] EMBL CB645178 [CCCACCGGGTGGCGGGGCCGCAGAATCCGGCAAAGCGGCGGCGACGGCGAGGGGATCGGGCGCGGACGCGGAGAGGAGAGAGACAGCGATGGCCGCCGCCCGTGGTTGCCTCGCCTCTCGAGCCTACATAAGGGGGCGCGCGGCGCATCTCCGGGCTTCGGCGCGTCGGATTGGGAGGTCGGGATTGGGAGGAGGATGGGGAGGCGGGGGCGGGTGGTGCTGCGGCGGATCGAGGACCGGGTGCGGCGCGGGATCTGCTTCCGGAAGAGGCTCGCCGGGCTGGAGAAGAAGGTGGAGGAGCTCGCCGTGCTCTGCGACGCCCACGTCGGCTTCGTCGTCCTCTCCTGCTCCGGCGACGACGCCAACCCCCACCACTTCGCCGCGCCCGCCACTATTGAAAACATTGTGGAACGTTATGAGCACTCTCAAGCAGCACAAAAAGGAGTACATGGCAGGTGCATTCTGCAAAAGAGGAAGAGCAAGGATTTTCAAGTTCTCAAGGAAACAATAGATAAAGGACCAATCAATGATGACATGCGACCTATTGATGAAAAAGACATATCCACATTAAACATGGACCAGATTAGCCAAATTGAAATATTATTGGAAGATGAACTGAGGTGGACAAGGGCAAGAAAGGTGGTGGCAGATAGAATTGCCAGGTTGCAGAACAAGGTACAGAAGAACC ]
[-] EMBL CB645179 [ GAGCAAGGATTTTCAAGTTCTCAGGGAACCAATAGATAAAGGCCCAATCAATGATGACATGCGGCCTATTGATGAAAAAGACATATCCCCATTAAACATGGACCAGATTAGCCAAATTGAAATATTATTGGAAGATGAACTGAGGTGGACAAGGGCAAGAAAGGTGGTGGCAGATAGAATTGCCAGGTTGCAGAAAAAGGTACAGAAGAAACCGGCGACTGCTGAGACAGAAAGCAACTCCCCTGAGATGCCCTCTGATCATGAGAAGAAACAGGTAGCAGGAGGAAGCCAGCAGAGCGCCGAGGAGGAGGAGGAGGAGATGGAGGTGGTGCTCAGGCACCGCCTGAGCCTGGGCACCGGCGACCGTGACGATGGTGGCGGTGGCGCGGCGGAGCAACGGCACCGGACGACGCCGCCGCCGGCGGTCGACCTCAACGTGCCGTGCCGGGACGCGGGTCAGCTGCAGTAGACGTGGACAAAACACCATTTGTTGCAGCACAGCAATCCGAGCCCATAACACAGCGTAGTAGTAACAGTTTACAGCCGTAAACAATGTTTCGAAGTTATACTGTTGCTGGGAAGTTACTGTGCTAATAATTTTACTACTGTAGCGGTTCATGCCGAGGGACGCTGTGTGTGTCCGTACGTATCCGTATATATATTAATAAGGCTGGCTGTGCCTGCAAATTACTGCTAATGTGAAGGGCATGCGAAAGAAGACGCAT]
consensusID : consensus_6027#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1060 fasta sequence
[GGGATGGGGAGGCGGGGGCGGGTGGTGCTGCGGCGGATCGAGGACCGGGTGCGGCGCGGGATCTGCTTCCGGAAGAGGCTCGCCGGGCTGGAGAAGAAGGCGGAGGAGCTCGCCGTGCTCTGCGACGCCCACGTCGGCTTCGTCGTCCTCTCCTGCTCCGACGACGACCGCCTCCACCATTTCGCCGCGCCCGCCACTATAGAAAACATTGTGGAACGTTATGAGAATTCTCTAACAGCACAAAAGGGAGTACATGGCAGGCGCACTCCGGAAAAGAGAGACACTCATTGGTGAAAATTTTCCTGCCGGTGCTGATGATAATTATTTTACCATACCAAGGGCAAGGATTTTCATGTTCCCAAGGAAACAACAGATAAAGGGTCGAACGATGATGACATGCGATCTATTGATGAAACAGACATATCCACATTGAACATGGACCAGCTTAGCCAAATTGAAAGATTACTGGAAGATGAACTAAGGTGGACAAGGGCAAGAAAGGTGGTGGTGGATAGAAGTGCCAGATTACAAAAAAAGGTGCAGGGGAAAGCGGCGATTGTTGAGGTTGAGAGGGGCTCCATGGAGATTCCCATAGAATCTGGGCAGGAGAAGGAACAGATAGGAGGGGAGGCTGTGGAGGAGCAACGGAGCCGGACTACGCCGTTGGACCTCAACATGCCTTGCTGGGACGCAGGTCCTCTGCAGTAAACGTAGATAACATTATCTTTGCACAGCAATCTGAGTCTGTCTAACGTTAGTCGCTACTACTGTCCCCGGTACTAACAGTGTCGTAAGTTACTGTTGCTGGGAAACTACTACTACGCTTTGCTAATCTTTTTTTACTGTAGCCGTTCATATCCAGGATACTGTGCCGTAACTGGAGCACACCAGATTCAAATCAAATGTACTGTGACACCATTGTATTTTAAAATGTGTTTTTCTCCTACTTCCTACTAGTTCTAGTTCATGTTCGGTGGAAAATTGTAAACCAAATAAACCGGCATCGGTATTGGTCGATGTGTACCCGTGGGCTCTGTAATAAGACTGTCCGTGCCTGCAA]
[+] EMBL AK111796 [GGGATGGGGAGGCGGGGGCGGGTGGTGCTGCGGCGGATCGAGGACCGGGTGCGGCGCGGGATCTGCTTCCGGAAGAGGCTCGCCGGGCTGGAGAAGAAGGCGGAGGAGCTCGCCGTGCTCTGCGACGCCCACGTCGGCTTCGTCGTCCTCTCCTGCTCCGACGACGACCGCCTCCACCATTTCGCCGCGCCCGCCACTATAGAAAACATTGTGGAACGTTATGAGAATTCTCTAACAGCACAAAAGGGAGTACATGGCAGGCGCACTCCGGAAAAGAGAGACACTCATTGGTGAAAATTTTCCTGCCGGTGCTGATGATAATTATTTTACCATACCAAGGGCAAGGATTTTCATGTTCCCAAGGAAACAACAGATAAAGGGTCGAACGATGATGACATGCGATCTATTGATGAAACAGACATATCCACATTGAACATGGACCAGCTTAGCCAAATTGAAAGATTACTGGAAGATGAACTAAGGTGGACAAGGGCAAGAAAGGTGGTGGTGGATAGAAGTGCCAGATTACAAAAAAAGGTGCAGGGGAAAGCGGCGATTGTTGAGGTTGAGAGGGGCTCCATGGAGATTCCCATAGAATCTGGGCAGGAGAAGGAACAGATAGGAGGGGAGGCTGTGGAGGAGCAACGGAGCCGGACTACGCCGTTGGACCTCAACATGCCTTGCTGGGACGCAGGTCCTCTGCAGTAAACGTAGATAACATTATCTTTGCACAGCAATCTGAGTCTGTCTAACGTTAGTCGCTACTACTGTCCCCGGTACTAACAGTGTCGTAAGTTACTGTTGCTGGGAAACTACTACTACGCTTTGCTAATCTTTTTTTACTGTAGCCGTTCATATCCAGGATACTGTGCCGTAACTGGAGCACACCAGATTCAAATCAAATGTACTGTGACACCATTGTATTTTAAAATGTGTTTTTCTCCTACTTCCTACTAGTTCTAGTTCATGTTCGGTGGAAAATTGTAAACCAAATAAACCGGCATCGGTATTGGTCGATGTGTACCCGTGGGCTCTGTAATAAGACTGTCCGTGCCTGCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6027#0 CCCACCGGGTGGCGGGGCCGCAGAATCCGGCAAAGCGGCGGCGACGGCGAGGGGATCGGG 60
consensus_6027#1 ------------------------------------------------------------
consensus_6027#0 CGCGGACGCGGAGAGGAGAGAGACAGCGATGGCCGCCGCCCGTGGTTGCCTCGCCTCTCG 120
consensus_6027#1 ------------------------------------------------------------
consensus_6027#0 AGCCTACATAAGGGGGCGCGCGGCGCATCTCCGGGCTTCGGCGCGTCGGATTGGGAGGTC 180
consensus_6027#1 ------------------------------------------------------------
consensus_6027#0 GGGATTGGGAGGAGGATGGGGAGGCGGGGGCGGGTGGTGCTGCGGCGGATCGAGGACCGG 240
consensus_6027#1 ------------GGGATGGGGAGGCGGGGGCGGGTGGTGCTGCGGCGGATCGAGGACCGG 48
***********************************************
consensus_6027#0 GTGCGGCGCGGGATCTGCTTCCGGAAGAGGCTCGCCGGGCTGGAGAAGAAGGTGGAGGAG 300
consensus_6027#1 GTGCGGCGCGGGATCTGCTTCCGGAAGAGGCTCGCCGGGCTGGAGAAGAAGGCGGAGGAG 108
**************************************************** *******
consensus_6027#0 CTCGCCGTGCTCTGCGACGCCCACGTCGGCTTCGTCGTCCTCTCCTGCTCCGGCGACGAC 360
consensus_6027#1 CTCGCCGTGCTCTGCGACGCCCACGTCGGCTTCGTCGTCCTCTCCTGCTCCGACGACGAC 168
**************************************************** *******
consensus_6027#0 GCCAACCCCCACCACTTCGCCGCGCCCGCCACTATTGAAAACATTGTGGAACGTTATGAG 420
consensus_6027#1 C---GCCTCCACCATTTCGCCGCGCCCGCCACTATAGAAAACATTGTGGAACGTTATGAG 225
** ****** ******************** ************************
consensus_6027#0 CACTCTCAAGCAGCACAAAAAGGAGTACATGGCAGGTGCATTCTGCAAAAGAGG------ 474
consensus_6027#1 AATTCTCTAACAGCACAAAAGGGAGTACATGGCAGGCGCACTCCGGAAAAGAGAGACACT 285
* **** * ********** *************** *** ** * *******
consensus_6027#0 ---------------------------------------------------AAGAGCAAG 483
consensus_6027#1 CATTGGTGAAAATTTTCCTGCCGGTGCTGATGATAATTATTTTACCATACCAAGGGCAAG 345
*** *****
consensus_6027#0 GATTTTCAAGTTCTCAAGGAAACAATAGATAAAGGACCAATCAATGATGACATGCGACCT 543
consensus_6027#1 GATTTTCATGTTCCCAAGGAAACAACAGATAAAGGGTCGAACGATGATGACATGCGATCT 405
******** **** *********** ********* * * * ************** **
consensus_6027#0 ATTGATGAAAAAGACATATCCACATTAAACATGGACCAGATTAGCCAAATTGAAATATTA 603
consensus_6027#1 ATTGATGAAACAGACATATCCACATTGAACATGGACCAGCTTAGCCAAATTGAAAGATTA 465
********** *************** ************ *************** ****
consensus_6027#0 TTGGAAGATGAACTGAGGTGGACAAGGGCAAGAAAGGTGGTGGCAGATAGAATTGCCAGG 663
consensus_6027#1 CTGGAAGATGAACTAAGGTGGACAAGGGCAAGAAAGGTGGTGGTGGATAGAAGTGCCAGA 525
************* **************************** ******* ******
consensus_6027#0 TTGCAGAACAAGGTACAGAAGAACCCGGCGACTGCTGAGACAGAAAGCAACTCCCCTGAG 723
consensus_6027#1 TTACAAAAAAAGGTGCAGGGGAAAGCGGCGATTGTTGAGGTTGAGAGGGGCTCCATGGAG 585
** ** ** ***** *** *** ****** ** **** ** ** **** ***
consensus_6027#0 ATGCCC------TCTGATCATGAGAAGAAACAGGTAGCAGGAGGAAGCCAGCAGAGCGCC 777
consensus_6027#1 ATTCCCATAGAATCTGGGCAGGAGAAGGAACAGATAGGAGG-GGAGGCTGTGGAGGAGCA 644
** *** **** ** ****** ***** *** *** *** ** * **
consensus_6027#0 GAGGAGGAGGAGGAGGAGATGGAGGTGGTGCTCAGGCACCGCCTGAGCCTGGGCACCGGC 837
consensus_6027#1 ACGGAGCCGGACTACGCCGTTGGACC--TCAACATGCCTTGCTGGGACGCAGGTCCT--C 700
**** *** * * * * * ** ** ** * * ** * *
consensus_6027#0 GACCGTGA-CGATGGTGGCGGTGGCGCGGCGGAGCAAC--GGCACCGGACGACGCCGCCG 894
consensus_6027#1 TGCAGTAAACGTAGATAACATTATCTTTGCACAGCAATCTGAGTCTGTCTAACGTTAGTC 760
* ** * ** * * * * * ** ***** * * * ***
consensus_6027#0 CCGGCGGTCGACCTCAACGT--GCCGTGCCGGGACGCGGGTCAGCTGCAGTAG-ACGTGG 951
consensus_6027#1 GCTACTACTGTCCCCGGTACTAACAGTGTCGTAAGTTACTGTTGCTGGGAAACTACTACT 820
* * * ** * * *** ** * **** * **
consensus_6027#0 ACAAAACACCA--TTTGTTGCAGCACAGCAATCCGAGCCCATAACACAGCGTAGTAGTAA 1009
consensus_6027#1 ACGCTTTGCTAATCTTTTTTTACTGTAGCCGTTCATATCCAGGATACTGTGCCGTAACTG 880
** * * ** ** * *** * * *** * ** * * ***
consensus_6027#0 CAGTTTAC-AGCCGTAAAC--AATGTTTCGAAGTTATACTGTTGCTGGGAAGTTACTGTG 1066
consensus_6027#1 GAGCACACCAGATTCAAATCAAATGTACTGTGACACCATTGTATTTTAAAATGTGTTTTT 940
** ** ** *** ***** * * *** * ** * * *
consensus_6027#0 CTAATAATTTTACTACT-GTAGCGGTTCATGCCGAGGGACGCTGTGTGTGTCCGTACGTA 1125
consensus_6027#1 CTCCTA--CTTCCTACTAGTTCTAGTTCATGTTCGGTGGAAAATTGTAAA-CCAAATAAA 997
** ** ** ***** ** ******* * * *** ** * *
consensus_6027#0 TCCGTATATATATTAATAAGGCTGGCTGTGCCTGCAAATTACTGCTAATGTGAAGGGCAT 1185
consensus_6027#1 CCGGCATCGGTATTGGTCGATGTGTACCCGTGGGCTCTGTAATAAGACTGTCC-GTGCCT 1056
* * ** **** * ** * ** ** * * *** * ** *
consensus_6027#0 GCGAAAGAAGACGCAT 1201
consensus_6027#1 GCAA------------ 1060
** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||