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Oryza sativa
cluster # 6033 cluster # 6033       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6033#0 length = 1891 sequences # 3  

consensusID : consensus_6033#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1891
fasta sequence
                              [CATTCTTCCTCCCTCTGCCCTCCCTCCATCTCTTTCCCTTCCTCCGTCGCCGCCGCTACCCTTCTCTCTCTCTTCTGTGTTCCGGCGGCGGCAAGGCCGACCTGCTCCCCCGCCGCCTCTCCTCCTCCTCCTCCTCGCGCGCGCGCCGCCGGCGAACGGCCGCCGTATACTTACCCGCGGTGC-GGACGGGCTCCTCTTATCTCCTCCCCCGACCGCATCCTACCCCCTCTCTCTCCCTTGTGAGCCCTCCTCGGCGCGCACGGCCCCCGCCGCCGGCGAGCAGGCTCGGAACCAGGGGGGGTGGGGGACTCGACGCGACGAGCCCTCGTTCCATCGGCCTCTGTCTCGGTTGAGTCGAATTGAAGTATAATGGCATACCATGGACAGCTGGATGGACGCCAAGCTTCAGGTTTGATGCGTGATGGCGCCTTCCCTGCAGCCAGCCTTTCTGGCCGCCAACCTTTGGATCGCGCTGCCACCGCTCTGGAGATCTTGGAAAAGAAACTTGCTGAGCAGACCGCCGAGGCAGAAAAGCTTATCAGAGAGAATCAGCGATTGGCATCTAGCCATGTCGTCTTGAGGCAGGATATTGTTGATACTGAGAAAGAAATGCAAATGATCCGTGCTCACCTAGGTGATGTTCAGACAGAGACTGATATGCATATGAGAGATTTGATGGAGAGAATGAGATTGATGGAAGCAGATATACAAGCTGGTGATGCAGTGAAGAAGGAACTTCATCAAGTGCATATGGAGGCAAAGAGACTTATTGCTGAGAGGCAGATGCTCACTGTTGAGATGGATAAAGTAACTAAAGAGCTACATAAGTTCTCTGGTGACAGTAAGAAACTTCCTGAATTACTGACTGAGCTAGATGGGCTCCGAAAAGAGCATCAGAGTCTAAGATCTGCTTTTGAATATGAGAAAAACACAAACATCAAGCAAGTTGAGCAGATGCGGACGATGGAGATGAATTTAATGACTATGACCAAAGAGGCTGACAAGTTGCGTGCTGATGTGGCAAATGCTGAAAAACGAGCTCAAGTGGCAGCGGCTCAAGCAGTAGCAGCACAGGCGGGGGTGGCACATGTGACTGCTTCACAACCAGGGGCAGCACAAGCTGTGGCAGTGCCAGCTGCCTCAAACCCATATTCAAGTGCATTTACCGGTCATCCCTCTGCATATCACCAAGGAGCCACCCAAGCTGGGGTTTATCAGCAAGGGACCACCCAAGCTGGGGCATATCAGCAAGGATCTACCCAAGCTGGGGCATATGCTTACCCAACTTATGATGCCGCTACTGCTTACCAGATGCATGCTGCGCAAGCAAATGCATACGCGGGCTATCCTGGTTATCCAGTTGCAGGGTACACACAGGCCGCTTTGCCCGGTTATCCTAGTGCGTATGCTGCACCGCAGCAACCAATAAGCAGTGGTGTAGCTACAGATGTTGCAAGCATGTATGGCGCGATCAGTAGTGCTGGATATCCTGCTGGAGTTGTTCAGTCAAGCAGTGGAGCTGCCAATGCAGGACAAGCACCAGCTACTTATCCTGTCGCATACGACCCAACCAGAGCAGGCCAGAGGTGAAATCGTAGTTTCAGTCTCAGACCCAAATCACTATTTGCTAAACCCATTTTGTGGTGTAGCTGTAGTAAGATCCTTGGAGAGGCCAACAACAGCATGGCTCTAGTTCGTTTTTCTTGTAGATTCCTTCCCTATACATTTTAGCGGTCAATGAAAATTAGTTGTATATCGAATTGCTGCTCTTGGTTCGATACTTGAATTTAATTAGTTGTATACCGAATAGATCACGGTCAACTTGAATCTCTGTAATTCCCGGTTAAGAACGACACCCGGCAATTTTCTGAATGCTTTAGCTCCAGTGCTC]

[+] EMBL AK071348             [CATTCTTCCTCCCTCTGCCCTCCCTCCATCTCTTTCCCTTCCTCCGTCGCCGCCGCTACCCTTCTCTCTCTCTTCTGTGTTCCGGCGGCGGCAAGGCCGACCTGCTCCCCCGCCGCCTCTCCTCCTCCTCCTCCTCGCGCGCGCGCCGCCGGCGAACGGCCGCCGTATACTTACCCGCGGTGC GGACGGGCTCCTCTTATCTCCTCCCCCGACCGCATCCTACCCCCTCTCTCTCCCTTGTGAGCCCTCCTCGGCGCGCACGGCCCCCGCCGCCGGCGAGCAGGCTCGGAACCAGGGGGGGTGGGGGACTCGACGCGACGAGCCCTCGTTCCATCGGCCTCTGTCTCGGTTGAGTCGAATTGAAGTATAATGGCATACCATGGACAGCTGGATGGACGCCAAGCTTCAGGTTTGATGCGTGATGGCGCCTTCCCTGCAGCCAGCCTTTCTGGCCGCCAACCTTTGGATCGCGCTGCCACCGCTCTGGAGATCTTGGAAAAGAAACTTGCTGAGCAGACCGCCGAGGCAGAAAAGCTTATCAGAGAGAATCAGCGATTGGCATCTAGCCATGTCGTCTTGAGGCAGGATATTGTTGATACTGAGAAAGAAATGCAAATGATCCGTGCTCACCTAGGTGATGTTCAGACAGAGACTGATATGCATATGAGAGATTTGATGGAGAGAATGAGATTGATGGAAGCAGATATACAAGCTGGTGATGCAGTGAAGAAGGAACTTCATCAAGTGCATATGGAGGCAAAGAGACTTATTGCTGAGAGGCAGATGCTCACTGTTGAGATGGATAAAGTAACTAAAGAGCTACATAAGTTCTCTGGTGACAGTAAGAAACTTCCTGAATTACTGACTGAGCTAGATGGGCTCCGAAAAGAGCATCAGAGTCTAAGATCTGCTTTTGAATATGAGAAAAACACAAACATCAAGCAAGTTGAGCAGATGCGGACGATGGAGATGAATTTAATGACTATGACCAAAGAGGCTGACAAGTTGCGTGCTGATGTGGCAAATGCTGAAAAACGAGCTCAAGTGGCAGCGGCTCAAGCAGTAGCAGCACAGGCGGGGGTGGCACATGTGACTGCTTCACAACCAGGGGCAGCACAAGCTGTGGCAGTGCCAGCTGCCTCAAACCCATATTCAAGTGCATTTACCGGTCATCCCTCTGCATATCACCAAGGAGCCACCCAAGCTGGGGTTTATCAGCAAGGGACCACCCAAGCTGGGGCATATCAGCAAGGATCTACCCAAGCTGGGGCATATGCTTACCCAACTTATGATGCCGCTACTGCTTACCAGATGCATGCTGCGCAAGCAAATGCATACGCGGGCTATCCTGGTTATCCAGTTGCAGGGTACACACAGGCCGCTTTGCCCGGTTATCCTAGTGCGTATGCTGCACCGCAGCAACCAATAAGCAGTGGTGTAGCTACAGATGTTGCAAGCATGTATGGCGCGATCAGTAGTGCTGGATATCCTGCTGGAGTTGTTCAGTCAAGCAGTGGAGCTGCCAATGCAGGACAAGCACCAGCTACTTATCCTGTCGCATACGACCCAACCAGAGCAGGCCAGAGGTGAAATCGTAGTTTCAGTCTCAGACCCAAATCACTATTTGCTAAACCCATTTTGTGGTGTAGCTGTAGTAAGATCCTTGGAGAGGCCAACAACAGCATGGCTCTAGTTCGTTTTTCTTGTAGATTCCTTCCCTATACATTTTAGCGGTCAATGAAAATTAGTTGTATATCGAATTGCTGCTCTTGGTTCGATACTTGAATTTAATTAGTTGTATACCGAATAGATCACGGTCAACTTGAATCTCTGTAATTCCCGGTTAAGAACGACACCCGGCAATTTTCTGAATGCTTTAGCTCCAGTGCTC]
[+] EMBL AK104848             [                        TCCATCTCTTTCCCTTCCTCCGTCGCCGCCGCTACCCTTCTCTCTCTCTTCTGTGTTCCGGCGGCGGCAAGGCCGACCTGCTCCCCCGCCGCCTCTCCTCCTCCTCCTCCTCGCGCGCGCGCCGCCGGCGAACGGCCGCCGTATACTTACCCGCGGTGC GGACGGGCTCCTCTTATCTCCTCCCCCGACCGCATCCTACCCCCTCTCTCTCCCTTGTGAGCCCTCCTCGGCGCGCACGGCCCCCGCCGCCGGCGAGCAGGCTCGGAACCAGGGGGGGTGGGGGACTCGACGCGACGAGCCCTCGTTCCATCGGCCTCTGTCTCGGTTGAGTCGAATTGAAGTATAATGGCATACCATGGACAGCTGGATGGACGCCAAGCTTCAGGTTTGATGCGTGATGGCGCCTTCCCTGCAGCCAGCCTTTCTGGCCGCCAACCTTTGGATCGCGCTGCCACCGCTCTGGAGATCTTGGAAAAGAAACTTGCTGAGCAGACCGCCGAGGCAGAAAAGCTTATCAGAGAGAATCAGCGATTGGCATCTAGCCATGTCGTCTTGAGGCAGGATATTGTTGATACTGAGAAAGAAATGCAAATGATCCGTGCTCACCTAGGTGATGTTCAGACAGAGACTGATATGCATATGAGAGATTTGATGGAGAGAATGAGATTGATGGAAGCAGATATACAAGCTGGTGATGCAGTGAAGAAGGAACTTCATCAAGTGCATATGGAGGCAAAGAGACTTATTGCTGAGAGGCAGATGCTCACTGTTGAGATGGATAAAGTAACTAAAGAGCTACATAAGTTCTCTGGTGACAGTAAGAAACTTCCTGAATTACTGACTGAGCTAGATGGGCTCCGAAAAGAGCATCAGAGTCTAAGATCTGCTTTTGAATATGAGAAAAACACAAACATCAAGCAAGTTGAGCAGATGCGGACGATGGAGATGAATTTAATGACTATGACCAAAGAGGCTGACAAGTTGCGTGCTGATGTGGCAAATGCTGAAAAACGAGCTCAAGTGGCAGCGGCTCAAGCAGTAGCAGCACAGGCGGGGGTGGCACATGTGACTGCTTCACAACCAGGGGCAGCACAAGCTGTGGCAGTGCCAGCTGCCTCAAACCCATATTCAAGTGCATTTACCGGTCATCCCTCTGCATATCACCAAGGAGCCACCCAAGCTGGGGTTTATCAGCAAGGGACCACCCAAGCTGGGGCATATCAGCAAGGATCTACCCAAGCTGGGGCATATGCTTACCCAACTTATGATGCCGCTACTGCTTACCAGATGCATGCTGCGCAAGCAAATGCATACGCGGGCTATCCTGGTTATCCAGTTGCAGGGTACACACAGGCCGCTTTGCCCGGTTATCCTAGTGCGTATGCTGCACCGCAGCAACCAATAAGCAGTGGTGTAGCTACAGATGTTGCAAGCATGTATGGCGCGATCAGTAGTGCTGGATATCCTGCTGGAGTTGTTCAGTCAAGCAGTGGAGCTGCCAATGCAGGACAAGCACCAGCTA TTATCCTGTCGCATACGACCCAACCAGAGCAGGCCAGAGGTGAAATCGTAGTTTCAGTCTCAGACCCAAATCACTATTTGCTAAACCCATTTTGTGGTGTAGCTGTAGTAAGATCCTTGGAGAGGCCAACAACAGCATGGCTCTAGTTCGTTTTTCTTGTAGATTCCTTCCCTATACATTTTAGCGGTCAATGAAAATTAGTTGTATATCGAATTGCTGCTCTTGGTTCGATACTTGAATTTAATTAGTTGTATACCGAATAGATCACGGTCAACTTGAATCTCTGTAATT                                                     ]
[+] EMBL AU182849             [                                                                                   GGCGGCGGCAAGGCCGACCTGCTCCCCCGCCGCCTCTCCTCCTCCTCCTCCTCGCGCGCGCGCCGCCGGCGAACGGCCGCCGTATACTTACCCGCGGTGCAGGACGGGCTCCTCTTATCTCCTCCCCCGACCGCATCCTACCCCCTCTCTCTCCCTTGTGAGCCCTCCTCGGCGCGCACGGCCCCCGCCGCCGGCGAGCAGGCTCGGAACCAGGGGGGGTGGGGGACTCGACGCGACGAGCCCTCGTTCCATCGGCCTCTGTCTCGGTTGAGTCGAATTGAAGTATAATGGCATACCATGGACAGCTGGATGGACGCCAAGCTTCAGGTTTGATGCGTGATGGCGCCTTCCCTGCAGCCAGCCTTTCTGGCCGCCAACCTTTGGATCGCGCTGCCACCGCTCTGGAGATCTTGGAAAAGAAACTTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]


>consensus_6033#0 CATTCTTCCTCCCTCTGCCCTCCCTCCATCTCTTTCCCTTCCTCCGTCGCCGCCGCTACC CTTCTCTCTCTCTTCTGTGTTCCGGCGGCGGCAAGGCCGACCTGCTCCCCCGCCGCCTCT CCTCCTCCTCCTCCTCGCGCGCGCGCCGCCGGCGAACGGCCGCCGTATACTTACCCGCGG TGCGGACGGGCTCCTCTTATCTCCTCCCCCGACCGCATCCTACCCCCTCTCTCTCCCTTG TGAGCCCTCCTCGGCGCGCACGGCCCCCGCCGCCGGCGAGCAGGCTCGGAACCAGGGGGG GTGGGGGACTCGACGCGACGAGCCCTCGTTCCATCGGCCTCTGTCTCGGTTGAGTCGAAT TGAAGTATAATGGCATACCATGGACAGCTGGATGGACGCCAAGCTTCAGGTTTGATGCGT GATGGCGCCTTCCCTGCAGCCAGCCTTTCTGGCCGCCAACCTTTGGATCGCGCTGCCACC GCTCTGGAGATCTTGGAAAAGAAACTTGCTGAGCAGACCGCCGAGGCAGAAAAGCTTATC AGAGAGAATCAGCGATTGGCATCTAGCCATGTCGTCTTGAGGCAGGATATTGTTGATACT GAGAAAGAAATGCAAATGATCCGTGCTCACCTAGGTGATGTTCAGACAGAGACTGATATG CATATGAGAGATTTGATGGAGAGAATGAGATTGATGGAAGCAGATATACAAGCTGGTGAT GCAGTGAAGAAGGAACTTCATCAAGTGCATATGGAGGCAAAGAGACTTATTGCTGAGAGG CAGATGCTCACTGTTGAGATGGATAAAGTAACTAAAGAGCTACATAAGTTCTCTGGTGAC AGTAAGAAACTTCCTGAATTACTGACTGAGCTAGATGGGCTCCGAAAAGAGCATCAGAGT CTAAGATCTGCTTTTGAATATGAGAAAAACACAAACATCAAGCAAGTTGAGCAGATGCGG ACGATGGAGATGAATTTAATGACTATGACCAAAGAGGCTGACAAGTTGCGTGCTGATGTG GCAAATGCTGAAAAACGAGCTCAAGTGGCAGCGGCTCAAGCAGTAGCAGCACAGGCGGGG GTGGCACATGTGACTGCTTCACAACCAGGGGCAGCACAAGCTGTGGCAGTGCCAGCTGCC TCAAACCCATATTCAAGTGCATTTACCGGTCATCCCTCTGCATATCACCAAGGAGCCACC CAAGCTGGGGTTTATCAGCAAGGGACCACCCAAGCTGGGGCATATCAGCAAGGATCTACC CAAGCTGGGGCATATGCTTACCCAACTTATGATGCCGCTACTGCTTACCAGATGCATGCT GCGCAAGCAAATGCATACGCGGGCTATCCTGGTTATCCAGTTGCAGGGTACACACAGGCC GCTTTGCCCGGTTATCCTAGTGCGTATGCTGCACCGCAGCAACCAATAAGCAGTGGTGTA GCTACAGATGTTGCAAGCATGTATGGCGCGATCAGTAGTGCTGGATATCCTGCTGGAGTT GTTCAGTCAAGCAGTGGAGCTGCCAATGCAGGACAAGCACCAGCTACTTATCCTGTCGCA TACGACCCAACCAGAGCAGGCCAGAGGTGAAATCGTAGTTTCAGTCTCAGACCCAAATCA CTATTTGCTAAACCCATTTTGTGGTGTAGCTGTAGTAAGATCCTTGGAGAGGCCAACAAC AGCATGGCTCTAGTTCGTTTTTCTTGTAGATTCCTTCCCTATACATTTTAGCGGTCAATG AAAATTAGTTGTATATCGAATTGCTGCTCTTGGTTCGATACTTGAATTTAATTAGTTGTA TACCGAATAGATCACGGTCAACTTGAATCTCTGTAATTCCCGGTTAAGAACGACACCCGG CAATTTTCTGAATGCTTTAGCTCCAGTGCTC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)