cluster # 6034

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Oryza sativa
cluster # 6034 cluster # 6034 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6034#0 length = 1386 sequences # 1

consensus_6034#1 length = 750 sequences # 2

consensusID : consensus_6034#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1386
fasta sequence

                              [AAGAGGCCAAGCAAAGCAAATCAGTCGCGGCCATAGATAGCTATAGCTGCTATCTTAATCTAGCTCGCCTTTAATTTGGCCCCCGGCCTCTCTCTCTCTGCCTGTGTCCTACCAGCTGCACAAAAATCTCCCAGAAAACAGGCAGAGGGGAGAGAGACAGATACGCATCAATTAAGCTCATTTTCTTCGATCTGCTGGTGAAAGAAGAACTGAAGAAGAGAGGTAGCTGGACTGAAGAGGCCGGCAATGGCGGCGGCGGAAGTGCAGTCGGCTGCCGGGTGGGGGAGGCAGCTGCAGCAGGACGGCGGCGGGTGGAGGAAAGGGCCGTGGACGAGCCAGGAGGACGCGCTGCTCGTCGAGCATGTCAGGCAGCACGGCGAAGGCCGGTGGAATTCTGTCTCCAAGCTTACAGGTCTGAAGAGAAGCGGCAAGAGCTGCAGGCTACGATGGGTTAACTACCTGAGGCCTGATCTGAAGAGAGGCAAGATCACTCCCCAGGAGGAGAGCATCATCGTCCAGCTCCATGCCTTGTGGGGCAACAGGTGGTCGACGATCGCGCGTAGCCTCCCGGGCAGGACGGACAACGAGATCAAGAACTACTGGAGGACGCACTTCAAGAAGGGCAAGCCGTCCAAGAACATCGAGCGCGCCAGGGCCAGGTTCCTGAAGCAGCGCCGCGAGATGCAGCAGAGCCAGCAGCTGCAGCAGCCGACGCTAATGCCGACGCCGACGCCGCAGAGCAAGGACATCATCGTTGCCGAGACCGGTGACGCGCGCACCGACGACGACGCGGGCGGCGCCGCAGCGGCTGTGGCGCCGTCGTCGTCGTCGTCGTCTTTGTCGATGGCGGGCCGCGAGGCGGAGGACTTGATCATGCACCAGGACGCGATGGACGACCTCATGATGTGCCCCGCCATGTCCTACCACCTCATCCTCCACGGCGCCGCCGTCGCCGGCCATCAGCTGAGCGACGGCGGCGGCAGCTGCTGCGCCTCTACCAGCGAGGACTACGGCTCCAGCGAGGACGACGGCGCCACCTGGGGCAGCCTGTGGAACCTCGACGGCGCCGCCGGAGCATGCACGCTGTGGTAGATCAATTTCCCGGTCTGCATGACGCCATGAGAGAAGAGTAGTCGCGATCTCGAGTACGTGCATACAGACGACATAGCTGCGGCGTGCTCGTGGGATAAAGATGGGACAGCAAACTTATCATCCGTGGATCGATCGTACGTCCACTTCCACAAACGACGGCCTGAGTCGATGACACGTTAAAGCCATAGTACTATTATTGGTCACACTTCTTTAATCAGGGGAGATTAACTAATGTGTTCTTTTCCCCTTGTTGCTAGCTAGCTAGAGCTATAGTATAACAAAGGAGAGAGAGAG]

[+] EMBL AK109620             [AAGAGGCCAAGCAAAGCAAATCAGTCGCGGCCATAGATAGCTATAGCTGCTATCTTAATCTAGCTCGCCTTTAATTTGGCCCCCGGCCTCTCTCTCTCTGCCTGTGTCCTACCAGCTGCACAAAAATCTCCCAGAAAACAGGCAGAGGGGAGAGAGACAGATACGCATCAATTAAGCTCATTTTCTTCGATCTGCTGGTGAAAGAAGAACTGAAGAAGAGAGGTAGCTGGACTGAAGAGGCCGGCAATGGCGGCGGCGGAAGTGCAGTCGGCTGCCGGGTGGGGGAGGCAGCTGCAGCAGGACGGCGGCGGGTGGAGGAAAGGGCCGTGGACGAGCCAGGAGGACGCGCTGCTCGTCGAGCATGTCAGGCAGCACGGCGAAGGCCGGTGGAATTCTGTCTCCAAGCTTACAGGTCTGAAGAGAAGCGGCAAGAGCTGCAGGCTACGATGGGTTAACTACCTGAGGCCTGATCTGAAGAGAGGCAAGATCACTCCCCAGGAGGAGAGCATCATCGTCCAGCTCCATGCCTTGTGGGGCAACAGGTGGTCGACGATCGCGCGTAGCCTCCCGGGCAGGACGGACAACGAGATCAAGAACTACTGGAGGACGCACTTCAAGAAGGGCAAGCCGTCCAAGAACATCGAGCGCGCCAGGGCCAGGTTCCTGAAGCAGCGCCGCGAGATGCAGCAGAGCCAGCAGCTGCAGCAGCCGACGCTAATGCCGACGCCGACGCCGCAGAGCAAGGACATCATCGTTGCCGAGACCGGTGACGCGCGCACCGACGACGACGCGGGCGGCGCCGCAGCGGCTGTGGCGCCGTCGTCGTCGTCGTCGTCTTTGTCGATGGCGGGCCGCGAGGCGGAGGACTTGATCATGCACCAGGACGCGATGGACGACCTCATGATGTGCCCCGCCATGTCCTACCACCTCATCCTCCACGGCGCCGCCGTCGCCGGCCATCAGCTGAGCGACGGCGGCGGCAGCTGCTGCGCCTCTACCAGCGAGGACTACGGCTCCAGCGAGGACGACGGCGCCACCTGGGGCAGCCTGTGGAACCTCGACGGCGCCGCCGGAGCATGCACGCTGTGGTAGATCAATTTCCCGGTCTGCATGACGCCATGAGAGAAGAGTAGTCGCGATCTCGAGTACGTGCATACAGACGACATAGCTGCGGCGTGCTCGTGGGATAAAGATGGGACAGCAAACTTATCATCCGTGGATCGATCGTACGTCCACTTCCACAAACGACGGCCTGAGTCGATGACACGTTAAAGCCATAGTACTATTATTGGTCACACTTCTTTAATCAGGGGAGATTAACTAATGTGTTCTTTTCCCCTTGTTGCTAGCTAGCTAGAGCTATAGTATAACAAAGGAGAGAGAGAG]




>consensus_6034#0
AAGAGGCCAAGCAAAGCAAATCAGTCGCGGCCATAGATAGCTATAGCTGCTATCTTAATC
TAGCTCGCCTTTAATTTGGCCCCCGGCCTCTCTCTCTCTGCCTGTGTCCTACCAGCTGCA
CAAAAATCTCCCAGAAAACAGGCAGAGGGGAGAGAGACAGATACGCATCAATTAAGCTCA
TTTTCTTCGATCTGCTGGTGAAAGAAGAACTGAAGAAGAGAGGTAGCTGGACTGAAGAGG
CCGGCAATGGCGGCGGCGGAAGTGCAGTCGGCTGCCGGGTGGGGGAGGCAGCTGCAGCAG
GACGGCGGCGGGTGGAGGAAAGGGCCGTGGACGAGCCAGGAGGACGCGCTGCTCGTCGAG
CATGTCAGGCAGCACGGCGAAGGCCGGTGGAATTCTGTCTCCAAGCTTACAGGTCTGAAG
AGAAGCGGCAAGAGCTGCAGGCTACGATGGGTTAACTACCTGAGGCCTGATCTGAAGAGA
GGCAAGATCACTCCCCAGGAGGAGAGCATCATCGTCCAGCTCCATGCCTTGTGGGGCAAC
AGGTGGTCGACGATCGCGCGTAGCCTCCCGGGCAGGACGGACAACGAGATCAAGAACTAC
TGGAGGACGCACTTCAAGAAGGGCAAGCCGTCCAAGAACATCGAGCGCGCCAGGGCCAGG
TTCCTGAAGCAGCGCCGCGAGATGCAGCAGAGCCAGCAGCTGCAGCAGCCGACGCTAATG
CCGACGCCGACGCCGCAGAGCAAGGACATCATCGTTGCCGAGACCGGTGACGCGCGCACC
GACGACGACGCGGGCGGCGCCGCAGCGGCTGTGGCGCCGTCGTCGTCGTCGTCGTCTTTG
TCGATGGCGGGCCGCGAGGCGGAGGACTTGATCATGCACCAGGACGCGATGGACGACCTC
ATGATGTGCCCCGCCATGTCCTACCACCTCATCCTCCACGGCGCCGCCGTCGCCGGCCAT
CAGCTGAGCGACGGCGGCGGCAGCTGCTGCGCCTCTACCAGCGAGGACTACGGCTCCAGC
GAGGACGACGGCGCCACCTGGGGCAGCCTGTGGAACCTCGACGGCGCCGCCGGAGCATGC
ACGCTGTGGTAGATCAATTTCCCGGTCTGCATGACGCCATGAGAGAAGAGTAGTCGCGAT
CTCGAGTACGTGCATACAGACGACATAGCTGCGGCGTGCTCGTGGGATAAAGATGGGACA
GCAAACTTATCATCCGTGGATCGATCGTACGTCCACTTCCACAAACGACGGCCTGAGTCG
ATGACACGTTAAAGCCATAGTACTATTATTGGTCACACTTCTTTAATCAGGGGAGATTAA
CTAATGTGTTCTTTTCCCCTTGTTGCTAGCTAGCTAGAGCTATAGTATAACAAAGGAGAG
AGAGAG

consensusID : consensus_6034#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 750
fasta sequence

                              [CTTCATCACTCGCTAGCTCATCACTGCGAGCGGAGACAGCTCAGGAGGGAGGAAGCAAAAGAAGAGAGAGAGAGATCAAGAGATAGACGAAGAGATTTGTCTGTGTAAATCAATGGAAGGGCAGCAGTTCGCTTGGGGAAGGGAGGAGGGAGGGTGGAGGAAAGGGCCATGGACAGCGCAGGAAGACAAGCTGCTGGTTGAGTACGTGAGGCAGCACGGCGAAGGGAGGTGGAATTCTGTCGCCAAGATCACAGGTCTGAAGAGAAGTGGCAAGAGCTGCAGGCTTCGTTGGGTGAACTACCTGAGACCTGACCTCAAGCGAGGCAAGATCACGCCACAGGAGGAGAGCGTCATACTCGAGCTTCATGCCTTGTGGGGAAACAGGTGGTCGACGATCGCGCGTAGCCTGCCTGGCAGGACGGACAACGAGATCAAGAACTACTGGAGGACGCACTTCAAGAAGGGCAAGCCGTCCAAGAACATCGAGCGCGCGAGGGCTCGGTTCCTGAAGCAGCGCCGCGAGATGCAGCAGCAGAGCCAGCTGATGCAAACCGGCCAGCAGCAGCAGCTCGGCCAAGACGACGACGCCACCAGCGCGGTGGTGGACGACAACCTTGCGGAGGTCGCGCCACCAGCCGCCACCTCGCTGACCCACGACGGCGAGCTCCAGATAATGCAGGAGATGGCGCCGGACATGGACGACCTGCTGTACTACCACCCGGGAGACATGTCGCCCTATTCCTACGACGA]

[+] EMBL AK099283             [CTTCATCACTCGCTAGCTCATCACTGCGAGCGGAGACAGCTCAGGAGGGAGGAAGCAAAAGAAGAGAGAGAGAGATCAAGAGATAGACGAAGAGATTTGTCTGTGTAAATCAATGGAAGGGCAGCAGTTCGCTTGGGGAAGGGAGGAGGGAGGGTGGAGGAAAGGGCCATGGACAGCGCAGGAAGACAAGCTGCTGGTTGAGTACGTGAGGCAGCACGGCGAAGGGAGGTGGAATTCTGTCGCCAAGATCACAGGTCTGAAGAGAAGTGGCAAGAGCTGCAGGCTTCGTTGGGTGAACTACCTGAGACCTGACCTCAAGCGAGGCAAGATCACGCCACAGGAGGAGAGCGTCATACTCGAGCTTCATGCCTTGTGGGGAAACAGGTGGTCGACGATCGCGCGTAGCCTGCCTGGCAGGACGGACAACGAGATCAAGAACTACTGGAGGACGCACTTCAAGAAGGGCAAGCCGTCCAAGAACATCGAGCGCGCGAGGGCTCGGTTCCTGAAGCAGCGCCGCGAGATGCAGCAGCAGAGCCAGCTGATGCAAACCGGCCAGCAGCAGCAGCTCGGCCAAGACGACGACGCCACCAGCGCGGTGGTGGACGACAACCTTGCGGAGGTCGCGCCACCAGCCGCCACCTCGCTGACCCACGACGGCGAGCTCCAGATAATGCAGGAGATGGCGCCGGACATGGACGACCTGCTGTACTACCACCCGGGAGACATGTCGCCCTATTCCTACGACGA]
[+] EMBL AK111807             [CTTCATCACTCGCTAGCTCATCACTGCGAGCGGAGACAGCTCAGGAGGGAGGAAGCAAAAGAAGAGAGAGAGAGATCAAGAGATAGACGAAGAGATTTGTCTGTGTAAATCAATGGAAGGGCAGCAGTTCGCTTGGGGAAGGGAGGAGGGAGGGTGGAGGAAAGGGCCATGGACAGCGCAGGAAGACAAGCTGCTGGTTGAGTACGTGAGGCAGCACGGCGAAGGGAGGTGGAATTCTGTCGCCAAGATCACAGGTCTGAAGAGAAGTGGCAAGAGCTGCAGGCTTCGTTGGGTGAACTACCTGAGACCTGACCTCAAGCGAGGCAAGATCACGCCACAGGAGGAGAGCGTCATACTCGAGCTTCATGCCTTGTGGGGAAACAGGTGGTCGACGATCGCGCGTAGCCTGCCTGGCAGGACGGACAACGAGATCAAGAACTACTGGAGGACGCACTTCAAGAAGGGCAAGCCGTCCAAGAACATCGAGCGCGCGAGGGCTCGGTTCCTGAAGCAGCGCCGCGAGATGCAGCAGCAGAGCCAGCTGATGCAAACCGGCCAGCAGCAGCAGCTCGGCCAAGACGACGACGCCACCAGCGCGGTGGTGGACGACAACCTTGCGGAGGTCGCGCCACCAGCCGCCACCTCGCTGACCCACGACGGCGAGCTCCAGATAATGCAGGAGATGGCGCCGGACATGGACGACCTGCTGTACTACCACCCGGGAGACATGTCGCCCTATTCCTACGACGA]




>consensus_6034#1
CTTCATCACTCGCTAGCTCATCACTGCGAGCGGAGACAGCTCAGGAGGGAGGAAGCAAAA
GAAGAGAGAGAGAGATCAAGAGATAGACGAAGAGATTTGTCTGTGTAAATCAATGGAAGG
GCAGCAGTTCGCTTGGGGAAGGGAGGAGGGAGGGTGGAGGAAAGGGCCATGGACAGCGCA
GGAAGACAAGCTGCTGGTTGAGTACGTGAGGCAGCACGGCGAAGGGAGGTGGAATTCTGT
CGCCAAGATCACAGGTCTGAAGAGAAGTGGCAAGAGCTGCAGGCTTCGTTGGGTGAACTA
CCTGAGACCTGACCTCAAGCGAGGCAAGATCACGCCACAGGAGGAGAGCGTCATACTCGA
GCTTCATGCCTTGTGGGGAAACAGGTGGTCGACGATCGCGCGTAGCCTGCCTGGCAGGAC
GGACAACGAGATCAAGAACTACTGGAGGACGCACTTCAAGAAGGGCAAGCCGTCCAAGAA
CATCGAGCGCGCGAGGGCTCGGTTCCTGAAGCAGCGCCGCGAGATGCAGCAGCAGAGCCA
GCTGATGCAAACCGGCCAGCAGCAGCAGCTCGGCCAAGACGACGACGCCACCAGCGCGGT
GGTGGACGACAACCTTGCGGAGGTCGCGCCACCAGCCGCCACCTCGCTGACCCACGACGG
CGAGCTCCAGATAATGCAGGAGATGGCGCCGGACATGGACGACCTGCTGTACTACCACCC
GGGAGACATGTCGCCCTATTCCTACGACGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6034#0      AAGAGGCCAAGCAAAGCAAATCAGTCGCGGCCATAGATAGCTATAGCTGCTATCTTAATC 60
consensus_6034#1      ------------------------------------------------------------
                                                                                  

consensus_6034#0      TAGCTCGCCTTTAATTTGGCCCCCGGCCTCTCTCTCTCTGCCTGTGTCCTACCAGCTGCA 120
consensus_6034#1      ------------------------------------------------------------
                                                                                  

consensus_6034#0      CAAAAATCTCCCAGAAAACAGGCAGAGGGGAGAGAGACAGATACGCATCAATTAAGCTCA 180
consensus_6034#1      -----------------------------------CTTCATCACTCGCTAGCTCATCACT 25
                                                                ** *   *  * * * * 

consensus_6034#0      TTTTCTTCGATCTGCTGGTGAAAGAAGAA-CTGAAGAAGAGAGGTAGCTGGACTGAAGAG 239
consensus_6034#1      GCGAGCGGAGACAGCTCAGGAGGGAGGAAGCAAAAGAAGAGAGAGAG---AGATCAAGAG 82
                                 * ***   **  ** *** *  **********  **      * *****

consensus_6034#0      GCCGGCAATGGCGGCGGCGGAAGTGCAGTCGGCTGCCGGGTGGGGGAGGCAGCTGCAGCA 299
consensus_6034#1      ATAGACGAAGAGATTTGTCTGTGTA-AATCAATGGAAGGGCAGCAGTTCGCTTGGGGAAG 141
                         * * * *      *     **  * **    *  ***  *  *        *     

consensus_6034#0      GGACGGCGGCGGGTGGAGGAAAGGGCCGTGGACGAGCCAGGAGGACGCGCTGCTCGTCGA 359
consensus_6034#1      GGAGGAGGGAGGGTGGAGGAAAGGGCCATGGACAGCGCAGGAAGACAAGCTGCTGGTTGA 201
                      *** *  ** ***************** *****    ***** ***  ****** ** **

consensus_6034#0      GCATGTCAGGCAGCACGGCGAAGGCCGGTGGAATTCTGTCTCCAAGCTTACAGGTCTGAA 419
consensus_6034#1      GTACGTGAGGCAGCACGGCGAAGGGAGGTGGAATTCTGTCGCCAAGATCACAGGTCTGAA 261
                      * * ** *****************  ************** ***** * ***********

consensus_6034#0      GAGAAGCGGCAAGAGCTGCAGGCTACGATGGGTTAACTACCTGAGGCCTGATCTGAAGAG 479
consensus_6034#1      GAGAAGTGGCAAGAGCTGCAGGCTTCGTTGGGTGAACTACCTGAGACCTGACCTCAAGCG 321
                      ****** ***************** ** ***** *********** ***** ** *** *

consensus_6034#0      AGGCAAGATCACTCCCCAGGAGGAGAGCATCATCGTCCAGCTCCATGCCTTGTGGGGCAA 539
consensus_6034#1      AGGCAAGATCACGCCACAGGAGGAGAGCGTCATACTCGAGCTTCATGCCTTGTGGGGAAA 381
                      ************ ** ************ ****  ** **** ************** **

consensus_6034#0      CAGGTGGTCGACGATCGCGCGTAGCCTCCCGGGCAGGACGGACAACGAGATCAAGAACTA 599
consensus_6034#1      CAGGTGGTCGACGATCGCGCGTAGCCTGCCTGGCAGGACGGACAACGAGATCAAGAACTA 441
                      *************************** ** *****************************

consensus_6034#0      CTGGAGGACGCACTTCAAGAAGGGCAAGCCGTCCAAGAACATCGAGCGCGCCAGGGCCAG 659
consensus_6034#1      CTGGAGGACGCACTTCAAGAAGGGCAAGCCGTCCAAGAACATCGAGCGCGCGAGGGCTCG 501
                      *************************************************** *****  *

consensus_6034#0      GTTCCTGAAGCAGCGCCGCGAGATGCAGCAGAGCCAGCAGCTGCAGCAGCCGACGCTAAT 719
consensus_6034#1      GTTCCTGAAGCAGCGCCGCGAGATGCAGCAG---CAG-AGC-----CAGCTGATGCAAA- 551
                      *******************************   *** ***     **** ** ** ** 

consensus_6034#0      GCCGACGCCGACGCCGCAGAGCAAGGACATCATCGTTGCCGAGACCGGTGACGCGCGCAC 779
consensus_6034#1      -CCGGC---------------CAGCAGCAGCAGCTCGGCCAAGAC-GACGACGC---CAC 591
                       *** *               **    ** ** *   *** **** *  *****   ***

consensus_6034#0      CGACGACGACGCGGGCGGCGCCGCAGCGGCTGTGGCGCCGTC-GTCGTCGTCGTCGTCTT 838
consensus_6034#1      CAGCGCGGTGGTGGACGACAACCTTGCGGAGGTCGCGCCACCAGCCGCCACCTCGCTGAC 651
                      *  **  *  * ** ** *  *   ****  ** *****  * * ** *  *    *   

consensus_6034#0      TGTCGATGGCGGGCCGCGAGGCGGAGGACTTGATCATGCACCAGGACGCGATGGACGACC 898
consensus_6034#1      CCACGACGGCGAGCTCC-AGATAATGCAGGAGATGGCGCC---GGAC---ATGGACGACC 704
                         *** **** **  * **     * *   ***   **    ****   **********

consensus_6034#0      TCATGATGTGCCCCGCCAT-GTCCTACCACCTCATCCTCCACGGCGCCGCCGTCGCCGGC 957
consensus_6034#1      TGCTGTACTACCACCCGGGAGACATGTCGCCCTATTC-CTACGACGA------------- 750
                      *  **   * ** * *    * * *  * **  ** * * *** **              

consensus_6034#0      CATCAGCTGAGCGACGGCGGCGGCAGCTGCTGCGCCTCTACCAGCGAGGACTACGGCTCC 1017
consensus_6034#1      ------------------------------------------------------------
                                                                                  

consensus_6034#0      AGCGAGGACGACGGCGCCACCTGGGGCAGCCTGTGGAACCTCGACGGCGCCGCCGGAGCA 1077
consensus_6034#1      ------------------------------------------------------------
                                                                                  

consensus_6034#0      TGCACGCTGTGGTAGATCAATTTCCCGGTCTGCATGACGCCATGAGAGAAGAGTAGTCGC 1137
consensus_6034#1      ------------------------------------------------------------
                                                                                  

consensus_6034#0      GATCTCGAGTACGTGCATACAGACGACATAGCTGCGGCGTGCTCGTGGGATAAAGATGGG 1197
consensus_6034#1      ------------------------------------------------------------
                                                                                  

consensus_6034#0      ACAGCAAACTTATCATCCGTGGATCGATCGTACGTCCACTTCCACAAACGACGGCCTGAG 1257
consensus_6034#1      ------------------------------------------------------------
                                                                                  

consensus_6034#0      TCGATGACACGTTAAAGCCATAGTACTATTATTGGTCACACTTCTTTAATCAGGGGAGAT 1317
consensus_6034#1      ------------------------------------------------------------
                                                                                  

consensus_6034#0      TAACTAATGTGTTCTTTTCCCCTTGTTGCTAGCTAGCTAGAGCTATAGTATAACAAAGGA 1377
consensus_6034#1      ------------------------------------------------------------
                                                                                  

consensus_6034#0      GAGAGAGAG 1386
consensus_6034#1      ---------