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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6048#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2053 fasta sequence
[TCCCCCCTCCTCTCCTCTCCCCTCTCTCGCGGTCGCCTCGGTGCAGCCCGCGAAAATAGCAGCCGCCCGTTCCCTCCCTCTCCCTCTCCCCTGCCCTGCCGAAGCCGCGGCGATGAACGGCGCCACGGCCGGCTCCGGCTCCGGCTCCGACCACGACGACGCGCGCGCCGCCGAGGAGGCCAGAGGGGAGGAGGCGGCAGGCCGTGCCGTGGAGGTTGAGGAGGAGGAGGAGGAGGAGGAGGCGGTGCCCGTGGCGGAGGAGAGGGCCGCGTGGGGCGGCGGCGGCACTCCCCCGACCCCCGAGCCGAAGAGCGACGCGGACGCGGAGGGCGCGGGCTCGCTGGATCGGGTGGAGCTCAATGCAGGGGCGGGCGGCGGCCGTGAGCGCGAGGACGACGAGGGGGAGGACGAGGCCGTGGGGGCGAGGGGGGTGGAGCTGAACGGGGAGGACGCCATGAGCCACGACGGCCACGACGGCGATGAGGATGGCGATGACGAGGAGGACGGCGACGACGGCGAGGAGGAGGAGGAGGAGGATGATGATGAGGAGGATGACGATGACGACTCCACCCCCGATGCGTCGCCGAGGGCGGAGGCGAAGGCGGAGGGCGAGAGCTCCACCGTGATGGCGGGCTGCGCCAACCAGCCCGCTGAGCCCGACCCCTTCCTCGACGGTGACGACTCTGGAACGGAGGAGGAGCAGGCGGCGTTCATGGTGGAGCTGGAGCGCTTCCACAGGGAGCACGGCCTCGAGTTCAAGCCTCCCAAGTTCTATGGCAAAGGTCTCAACTGCCTCATGTTATGGAGGCAGGTTGCCCACCTGGGAGGCCATGAGCAGGTAACAATTTGTAAACTATGGCGTCAAGTTGGAGAGACTTTCAGGCCGCCAAAGACGTGCACTACTGTATCGTGGTCGTTCCGAATTTTCTATGAGAAGGCACTTCTCGAGTATGAAAAATACAAAGTCCGAACTGGCCAGCTTCAAGTACCATTGTCTGCTTTACCACAGCCTGGTGGTACTGGCCGTGAGATTGGTATGAATCAATCATCTTCTGCCAGAGTTAGAAGGGATTCTGCAGCGCGTGCTATGCAGGGTTGGCATGCTCACCGTCTCCTTACCAATGGCATATATGGAGATCAAATGTTGAA-GGAAAAAGATTCAGTCCC-TTCTTCAAGTCGTGGAGTACTCAAGAGGAAGAAAGCATCTAGTCCAGAGTGTGCTATCAAGGTGTCTCGTACAAAAATAAACAAATCACAGGATGACTCAATGGTCACTGATGTTGGAGAACCTGCCGAGTGGGTGAAGATTAATGTACGACAGACTAAAGATTGTTTCGAAATCTATGCTCTGGTTCCTGGACTTCTACGCGAAGAGGTGCATGTTCAGTCAGATCCTGCTGGGCGTCTGGTTATAACTGGGGACCCAGAGCAGCCTGATAATCCTTGGGGGATCACTCCATTCAAGAAGGTGGTCAATCTGCCATTGAGGATCGATCCTCATCAAACATCCGCCGTTGTCACGCTTCATGGCCAACTATTTGTTCGTGCACCATTTGGGCATGCTGATATGTAGATAGTTTCCTTTGAGTGCAGATACCACTGGCCCGGTGGTATTTCTGGAATTCTTTATAGGCTTTAGACAATTTTGTTGCAGAAGCAAGTTTTTGTGTGAGCAGACGCTCAATGCCGAGCTGACAACGGAATTTTGCTGTAATCAGTAGCAAGACTTGGGGATCTGCTATAATAGTATTGTTTATAGTAGTTGACATAAGTAGGCTGGTTTATTTTGGTTTGACCTACCGGAGATTTTTGTTTTGTTGTTTATTTTTAGTCGGAAGCAGAGTATATCAAAATAGAGAGATGAAAATAGGTTAAATGAAAGCTTAACTTCTTTATTTTTTGGAAAACAAAGGATTAGTTTCTTAACATTATTATTTACTATTTTCATAGTAATGTTTATAAGTGCCTCTGGGCAATGCTTGTCCTTAAGCAAATTTTTTATGCTTGCATTTGATTCCTCGTCCCAATGGACTATTGAATTCTAAATTTTGTT]
[+] EMBL AK107036 [TCCCCCCTCCTCTCCTCTCCCCTCTCTCGCGGTCGCCTCGGTGCAGCCCGCGAAAATAGCAGCCGCCCGTTCCCTCCCTCTCCCTCTCCCCTGCCCTGCCGAAGCCGCGGCGATGAACGGCGCCACGGCCGGCTCCGGCTCCGGCTCCGACCACGACGACGCGCGCGCCGCCGAGGAGGCCAGAGGGGAGGAGGCGGCAGGCCGTGCCGTGGAGGTTGAGGAGGAGGAGGAGGAGGAGGAGGCGGTGCCCGTGGCGGAGGAGAGGGCCGCGTGGGGCGGCGGCGGCACTCCCCCGACCCCCGAGCCGAAGAGCGACGCGGACGCGGAGGGCGCGGGCTCGCTGGATCGGGTGGAGCTCAATGCAGGGGCGGGCGGCGGCCGTGAGCGCGAGGACGACGAGGGGGAGGACGAGGCCGTGGGGGCGAGGGGGGTGGAGCTGAACGGGGAGGACGCCATGAGCCACGACGGCCACGACGGCGATGAGGATGGCGATGACGAGGAGGACGGCGACGACGGCGAGGAGGAGGAGGAGGAGGATGATGATGAGGAGGATGACGATGACGACTCCACCCCCGATGCGTCGCCGAGGGCGGAGGCGAAGGCGGAGGGCGAGAGCTCCACCGTGATGGCGGGCTGCGCCAACCAGCCCGCTGAGCCCGACCCCTTCCTCGACGGTGACGACTCTGGAACGGAGGAGGAGCAGGCGGCGTTCATGGTGGAGCTGGAGCGCTTCCACAGGGAGCACGGCCTCGAGTTCAAGCCTCCCAAGTTCTATGGCAAAGGTCTCAACTGCCTCATGTTATGGAGGCAGGTTGCCCACCTGGGAGGCCATGAGCAGGTAACAATTTGTAAACTATGGCGTCAAGTTGGAGAGACTTTCAGGCCGCCAAAGACGTGCACTACTGTATCGTGGTCGTTCCGAATTTTCTATGAGAAGGCACTTCTCGAGTATGAAAAATACAAAGTCCGAACTGGCCAGCTTCAAGTACCATTGTCTGCTTTACCACAGCCTGGTGGTACTGGCCGTGAGATTGGTATGAATCAATCATCTTCTGCCAGAGTTAGAAGGGATTCTGCAGCGCGTGCTATGCAGGGTTGGCATGCTCACCGTCTCCTTACCAATGGCATATATGGAGATCAAATGTTGAA GGAAAAAGATTCAGTCCC TTCTTCAAGTCGTGGAGTACTCAAGAGGAAGAAAGCATCTAGTCCAGAGTGTGCTATCAAGGTGTCTCGTACAAAAATAAACAAATCACAGGATGACTCAATGGTCACTGATGTTGGAGAACCTGCCGAGTGGGTGAAGATTAATGTACGACAGACTAAAGATTGTTTCGAAATCTATGCTCTGGTTCCTGGACTTCTACGCGAAGAGGTGCATGTTCAGTCAGATCCTGCTGGGCGTCTGGTTATAACTGGGGACCCAGAGCAGCCTGATAATCCTTGGGGGATCACTCCATTCAAGAAGGTGGTCAATCTGCCATTGAGGATCGATCCTCATCAAACATCCGCCGTTGTCACGCTTCATGGCCAACTATTTGTTCGTGCACCATTTGGGCATGCTGATATGTAGATAGTTTCCTTTGAGTGCAGATACCACTGGCCCGGTGGTATTTCTGGAATTCTTTATAGGCTTTAGACAATTTTGTTGCAGAAGCAAGTTTTTGTGTGAGCAGACGCTCAATGCCGAGCTGACAACGGAATTTTGCTGTAATCAGTAGCAAGACTTGGGGATCTGCTATAATAGTATTGTTTATAGTAGTTGACATAAGTAGGCTGGTTTATTTTGGTTTGACCTACCGGAGATTTTTGTTTTGTTGTTTATTTTTAGTCGGAAGCAGAGTATATCAAAATAGAGAGATGAAAATAGGTTAAATGAAAGCTTAACTTCTTTATTTTTTGGAAAACAAAGGATTAGTTTCTTAACATTATTATTTACTATTTTCATAGTAATGTTTATAAGTGCCTCTGGGCAATGCTTGTCCTTAAGCAAATTTTTTATGCTTGCATTTGATTCCTCGTCCCAATGGACTATTGAATTCTAAATTTTGTT]
[-] EMBL CB665295 [ GAAGGGAAAAAGA TCAGTCCCTTTCTTCAAGTCGTGGAGTACTCAAGAGGAAGAAAGCATCTAGTCCAGAGTGTGCTATCAAGGTGTCTCGTACAAAAATAAACAAATCACAGGATGACTCAATGGTCACTGATGTTGGAGAACCTGCCGAGTGGGTGAAGATTAATGTACGACAGACTAAAGATTGTTTCGAAATCTATGCTCTGGTTCCTGGACTTCTACGCGAAGAGGTGCATGTTCAGTCAGATCCTGCTGGGCGTCTGGTTATAACTGGGGACCCAGAGCAGCCTGATAATCCTTGGGGGATCACTCCATTCAAGAAGGTGGTCAATCTGCCATTGAGGATCGATCCTCATCAAACATCCGCCGTTGTCACGCTTCATGGCCAACTATTTGTTCGTGCACCATTTGGGCATGCTGATATGTAGATAGTTTCCTTTGAGTGCAGATACCACTGGCCCGGTGGTATTTCTGGAATTCTTTATAGGCTTTAGACAATTTTGTTGCAGAAGCAAGTTTTTGTGTGAGCAGACGCTCAATGCCGAGCTGACAACGGAATTTTGCTGTAATCAGTAGCAAGACTTGGGGATCTGCTATAATAGTATTGTTTATAGTAGTTGACATAAGTAGGCTGGTTTATTTTGGTTTGACCTACCGGAGATTTTTGTTTTGTTGTTTATTTTTAGTCGGAAGCAGAGTATATCAAAATAGAGAGATGAAAATAGGTTAAATGAAAGCTTAACTTCTTTATTTTTTGGAAAACAAAGGATTAGTTTCTTAACATTATTATTTACTATTTTCATAGTAATGTGTATAAGTGCCTCTGGGCAATGCTTGTC ]
consensusID : consensus_6048#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 785 fasta sequence
[CGGCCACGACGGCGATGAGGATGGCGATGACGAGGAGGACGGCGACGACGGCGAGGAGGAGGAGGAGGAGGATGATGATGAGGAGGATGACGATGACGACTCCACCCCCGATGCGTCGCCGAGGGCGGAGGCGAAGGCGGAGGGCGAGAGCTCCACCGTGATGGCGGGCTGCGCCAACCAGCCCGCTGAGCCCGACCCCTTCCTCGACGGTGACGACTCTGGAACGGAGGAGGAGCAGGCGGCGTTCATGGTGGAGCTGGAGCGCTTCCACAGGGAGCACGGCCTCGAGTTCAAGCCTCCCAAGTTCTATGGCAAAGGTCTCAACTGCCTCAAGTTATGGAGGCAGGTTGCCCACCTGGGAGGCCATGAGCAGGTATGGTCCTCGACTCCTTGTCACTAGCTTGCTCGCTGCTGCTACTGTAGAGTAAAATATTTTCGGTGACATATGTCCGGGTGGATCACGATCAAATAAGTTCAACAGTGATTAGTGAGCTGCAAGGACCTGAGTTATATTTATTCTAGTTAAATATTTTGCTTGTTCAGGTAACAATTTGTAAACTATGGCGTCAAGTTGGAGAGACTTTCAGGCCGCCAAAGACGTGCACTACTGTATCGTGGTCGTTCCGAATTTTCTATGAGAAGGCACTTCTCGAGTATGAAAAATACAAAGTCCGAACTGGCCAGCTTCAAGTACCATTGTCTGCTTTACCACAGCCTGGTGGTACTGGCCGTGAGATTGGTATGAATCAATCATCTTCTGCCAGAGTTAGAAGGGATTCTGCAGC]
[+] EMBL CB665294 [CGGCCACGACGGCGATGAGGATGGCGATGACGAGGAGGACGGCGACGACGGCGAGGAGGAGGAGGAGGAGGATGATGATGAGGAGGATGACGATGACGACTCCACCCCCGATGCGTCGCCGAGGGCGGAGGCGAAGGCGGAGGGCGAGAGCTCCACCGTGATGGCGGGCTGCGCCAACCAGCCCGCTGAGCCCGACCCCTTCCTCGACGGTGACGACTCTGGAACGGAGGAGGAGCAGGCGGCGTTCATGGTGGAGCTGGAGCGCTTCCACAGGGAGCACGGCCTCGAGTTCAAGCCTCCCAAGTTCTATGGCAAAGGTCTCAACTGCCTCAAGTTATGGAGGCAGGTTGCCCACCTGGGAGGCCATGAGCAGGTATGGTCCTCGACTCCTTGTCACTAGCTTGCTCGCTGCTGCTACTGTAGAGTAAAATATTTTCGGTGACATATGTCCGGGTGGATCACGATCAAATAAGTTCAACAGTGATTAGTGAGCTGCAAGGACCTGAGTTATATTTATTCTAGTTAAATATTTTGCTTGTTCAGGTAACAATTTGTAAACTATGGCGTCAAGTTGGAGAGACTTTCAGGCCGCCAAAGACGTGCACTACTGTATCGTGGTCGTTCCGAATTTTCTATGAGAAGGCACTTCTCGAGTATGAAAAATACAAAGTCCGAACTGGCCAGCTTCAAGTACCATTGTCTGCTTTACCACAGCCTGGTGGTACTGGCCGTGAGATTGGTATGAATCAATCATCTTCTGCCAGAGTTAGAAGGGATTCTGCAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6048#0 TCCCCCCTCCTCTCCTCTCCCCTCTCTCGCGGTCGCCTCGGTGCAGCCCGCGAAAATAGC 60
consensus_6048#1 ------------------------------------------------------------
consensus_6048#0 AGCCGCCCGTTCCCTCCCTCTCCCTCTCCCCTGCCCTGCCGAAGCCGCGGCGATGAACGG 120
consensus_6048#1 ------------------------------------------------------------
consensus_6048#0 CGCCACGGCCGGCTCCGGCTCCGGCTCCGACCACGACGACGCGCGCGCCGCCGAGGAGGC 180
consensus_6048#1 ------------------------------------------------------------
consensus_6048#0 CAGAGGGGAGGAGGCGGCAGGCCGTGCCGTGGAGGTTGAGGAGGAGGAGGAGGAGGAGGA 240
consensus_6048#1 ------------------------------------------------------------
consensus_6048#0 GGCGGTGCCCGTGGCGGAGGAGAGGGCCGCGTGGGGCGGCGGCGGCACTCCCCCGACCCC 300
consensus_6048#1 ------------------------------------------------------------
consensus_6048#0 CGAGCCGAAGAGCGACGCGGACGCGGAGGGCGCGGGCTCGCTGGATCGGGTGGAGCTCAA 360
consensus_6048#1 ------------------------------------------------------------
consensus_6048#0 TGCAGGGGCGGGCGGCGGCCGTGAGCGCGAGGACGACGAGGGGGAGGACGAGGCCGTGGG 420
consensus_6048#1 ------------------------------------------------------------
consensus_6048#0 GGCGAGGGGGGTGGAGCTGAACGGGGAGGACGCCATGAGCCACGACGGCCACGACGGCGA 480
consensus_6048#1 ---------------------------------------------CGGCCACGACGGCGA 15
***************
consensus_6048#0 TGAGGATGGCGATGACGAGGAGGACGGCGACGACGGCGAGGAGGAGGAGGAGGAGGATGA 540
consensus_6048#1 TGAGGATGGCGATGACGAGGAGGACGGCGACGACGGCGAGGAGGAGGAGGAGGAGGATGA 75
************************************************************
consensus_6048#0 TGATGAGGAGGATGACGATGACGACTCCACCCCCGATGCGTCGCCGAGGGCGGAGGCGAA 600
consensus_6048#1 TGATGAGGAGGATGACGATGACGACTCCACCCCCGATGCGTCGCCGAGGGCGGAGGCGAA 135
************************************************************
consensus_6048#0 GGCGGAGGGCGAGAGCTCCACCGTGATGGCGGGCTGCGCCAACCAGCCCGCTGAGCCCGA 660
consensus_6048#1 GGCGGAGGGCGAGAGCTCCACCGTGATGGCGGGCTGCGCCAACCAGCCCGCTGAGCCCGA 195
************************************************************
consensus_6048#0 CCCCTTCCTCGACGGTGACGACTCTGGAACGGAGGAGGAGCAGGCGGCGTTCATGGTGGA 720
consensus_6048#1 CCCCTTCCTCGACGGTGACGACTCTGGAACGGAGGAGGAGCAGGCGGCGTTCATGGTGGA 255
************************************************************
consensus_6048#0 GCTGGAGCGCTTCCACAGGGAGCACGGCCTCGAGTTCAAGCCTCCCAAGTTCTATGGCAA 780
consensus_6048#1 GCTGGAGCGCTTCCACAGGGAGCACGGCCTCGAGTTCAAGCCTCCCAAGTTCTATGGCAA 315
************************************************************
consensus_6048#0 AGGTCTCAACTGCCTCATGTTATGGAGGCAGGTTGCCCACCTGGGAGGCCATGAGCAGGT 840
consensus_6048#1 AGGTCTCAACTGCCTCAAGTTATGGAGGCAGGTTGCCCACCTGGGAGGCCATGAGCAGGT 375
***************** ******************************************
consensus_6048#0 AACAATTTGTAAACTATGGCGTCAAGTTGGAGAGACTTTCAGGCCGCCAAAGACGTGCAC 900
consensus_6048#1 ATGGTCCTCGACTCCTTGTCACTAGCTTG----------CTCGCTGC----------TGC 415
* * * * ** * * *** * ** ** *
consensus_6048#0 TACTGTATCGTGGT-CGTTCCGAATTTTCTATGAGAAGGCACTTCTCGAGTATGAAAAAT 959
consensus_6048#1 TACTGTAGAGTAAAATATTTTCGGTGACATATGTCCGGGTGGATCACGATCAAATAAGTT 475
******* ** ** * **** ** ** *** * ** *
consensus_6048#0 ACAAAGTCCGAACTGGCCAGCTTCAAGTACCATTGTCTGCTTTACCACAGCCTGGTGGTA 1019
consensus_6048#1 CAACAGT---GATTAGTGAGCTGCAAGGACCTGAGTTATATTTATTCTAGTTAAATA-TT 531
* *** * * * **** **** *** ** **** ** * *
consensus_6048#0 CTGGCCGTGAGATTGGTATGAATCAATCATCTTCTGCCAGAGTTAGAAGGGATTCTGCAG 1079
consensus_6048#1 TTGCTTGTTCA---GGTAACAATTTGTAAACTATGGCGTCAAGTTGGAGAGACTTTCAGG 588
** ** **** *** * * ** ** * * * ** ** * * *
consensus_6048#0 CGCGTGCTATGCAGGGTTGGCATGCTCACCGTCTCCTTACCAATGGCATATATGGAGATC 1139
consensus_6048#1 C---CGCCAAAGACGTGCACTACTGTATCGTGGTCGTTCCGAATTTTCTATGAGAAGG-C 644
* ** * * * * * * ** ** * *** *** * ** *
consensus_6048#0 AAATGTTGAAGGAAAAAGATTCAGTCCCTTCTTCAAGTCGTGGAGTACTCAAGAGGAAGA 1199
consensus_6048#1 ACTTCTCGAGTATGAAAAATACAAAG-----TCCGAACTGGCCAGC-TTCAAGTACCATT 698
* * * ** *** ** ** * * * * ** ***** *
consensus_6048#0 AAGCATCTAGTCCAGAGTGTGCTATCAAGGTGTCTCGTACAAAAATAAACAAATCACAGG 1259
consensus_6048#1 GTCTGCTTTA-CCACAGCCTGGTGGTACTGGCCGTGAGATTGGTATGAATCAATCATCTT 757
* *** ** ** * * * * * ** ** *****
consensus_6048#0 ATGACTCAATGGTCACTGATGTTGGAGAACCTGCCGAGTGGGTGAAGATTAATGTACGAC 1319
consensus_6048#1 CTGCCAGAGTTAGAAGGGATTCTGCAGC-------------------------------- 785
** * * * * *** ** **
consensus_6048#0 AGACTAAAGATTGTTTCGAAATCTATGCTCTGGTTCCTGGACTTCTACGCGAAGAGGTGC 1379
consensus_6048#1 ------------------------------------------------------------
consensus_6048#0 ATGTTCAGTCAGATCCTGCTGGGCGTCTGGTTATAACTGGGGACCCAGAGCAGCCTGATA 1439
consensus_6048#1 ------------------------------------------------------------
consensus_6048#0 ATCCTTGGGGGATCACTCCATTCAAGAAGGTGGTCAATCTGCCATTGAGGATCGATCCTC 1499
consensus_6048#1 ------------------------------------------------------------
consensus_6048#0 ATCAAACATCCGCCGTTGTCACGCTTCATGGCCAACTATTTGTTCGTGCACCATTTGGGC 1559
consensus_6048#1 ------------------------------------------------------------
consensus_6048#0 ATGCTGATATGTAGATAGTTTCCTTTGAGTGCAGATACCACTGGCCCGGTGGTATTTCTG 1619
consensus_6048#1 ------------------------------------------------------------
consensus_6048#0 GAATTCTTTATAGGCTTTAGACAATTTTGTTGCAGAAGCAAGTTTTTGTGTGAGCAGACG 1679
consensus_6048#1 ------------------------------------------------------------
consensus_6048#0 CTCAATGCCGAGCTGACAACGGAATTTTGCTGTAATCAGTAGCAAGACTTGGGGATCTGC 1739
consensus_6048#1 ------------------------------------------------------------
consensus_6048#0 TATAATAGTATTGTTTATAGTAGTTGACATAAGTAGGCTGGTTTATTTTGGTTTGACCTA 1799
consensus_6048#1 ------------------------------------------------------------
consensus_6048#0 CCGGAGATTTTTGTTTTGTTGTTTATTTTTAGTCGGAAGCAGAGTATATCAAAATAGAGA 1859
consensus_6048#1 ------------------------------------------------------------
consensus_6048#0 GATGAAAATAGGTTAAATGAAAGCTTAACTTCTTTATTTTTTGGAAAACAAAGGATTAGT 1919
consensus_6048#1 ------------------------------------------------------------
consensus_6048#0 TTCTTAACATTATTATTTACTATTTTCATAGTAATGTTTATAAGTGCCTCTGGGCAATGC 1979
consensus_6048#1 ------------------------------------------------------------
consensus_6048#0 TTGTCCTTAAGCAAATTTTTTATGCTTGCATTTGATTCCTCGTCCCAATGGACTATTGAA 2039
consensus_6048#1 ------------------------------------------------------------
consensus_6048#0 TTCTAAATTTTGTT 2053
consensus_6048#1 --------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||