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Oryza sativa
cluster # 6049 cluster # 6049       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6049#0 length = 1825 sequences # 3  

consensusID : consensus_6049#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1825
fasta sequence
                              [TAGTGTAGTGCGCGCTGTACTGTTCCCACGTCGCGTCGAGGCATCGGTTCGAGCGAGCGCGCGCGCGACGCGGGCGAGGCTCCGGCTCGATTCCGTCGCCACCCTGTGACAGCAGCAGCCACCGCCCACCGCCGCCGCCGCTTTCTGGAGGCTTCCCGTTGGCTCGTGGTTGCGGGGGGACTCGCGGAGTCGCGGTTGCGAGTTGGCTGCCTGCTACTCTGCTAGTGTGCTAAGCCTGCCTTTTAGTTAGTCTGGGAGCACGCTACTGCTACTTTCCCCAATCCAATCCAATCCAATCCAATCCTCGCCGGCGTTGGTTCGCTCGATCGGCGCGGCGCGGATGGAGACGCTCAGGAAGCAGGCCAGCAAGCTCAGGGAGCACGTCGCCAAGCAGCAGCAGGCTGTTCGGAAGCAGTTCAGTGCACGCTATAACCAGGATCCTTCTCTTGTCGATGAGGCGGAACTTGAGTGCCACCAGAATCTTCAGAGGCTATACAACAGTACAAGAGCTGCTAAACATTTCCAACGAAGTATTGTACGAGGTGTCGAGGGTTTCATTGCTGTCAGCACCAAACAGATGGAGATTGTGAAAAAGCTAGCTGAGGATTGTTGCAGATATGGAAACGACAATCAAAATTTTGGTTTTATTCTTGCAAGGGCTTCAGTTGAGTTTGGTAATTCCCATAGCCAAATGGAGAAAGAGCGGGAGAATCTTCTTAAATTTCTTGGAGAGCAGGTTTTTGAGCCTCTTCGAGAAATGATAATGAGTGCTCCTCTTGAAGATGCCCGCCTGTTAACTTACCGTTATCAACGGATCAGACAAGATATGGAATCTCAGATAGCTGATGTGATGAGAAAGCAACTGAAGTCCAAGGAGAGTAGCGGTAATGCAGATAATTCTGTGAAACTGCAACATGCAGAATCAAAATTATCTGAGCTCCGAACTACATTATCAGCATTAGGAAGAGAGGCAACTGCAGCTATGGAGGCTGTGGAGGTTCAGCAACAACAGGTTACCTTTGACCGTCTCCTTGCAATGGTTGATGCTGAGAGAGCTTATCATCAGAATGCTGCTGATATTCTGAACAAACTTCACGACGAGATGGTCCAAGCAAAACACCATGATGAGCCGGAAAACCATTATGATGAGACATCATCAGATCCTAAAACAGCTGCAACACATGAGCATTCACGTAGCACATCCGAAGATCACATATTTACTAATACTAGTGAACCTACAAGGACTGAAACCAGTGAACCTACAAGGACTGAAACTAGTGAACCTACAAGGAATGGTCAGGAAGTGCATTATGTTGGAGAGGTAATCCATCCATTCGATGCTCAGGCTGATGGCGAGCTCAGTATTTCCGTGGGAGATTATGTTGTGGTCCGGCAGGTGGCTCCCAATGGGTGGTCTGAAGGGGAATGCAAAGGAAAAGCTGGCTGGTTCCCATCTGCCTATGTGGAGCAGAGGGACAAAGCCCCGGCAAGTAAGGTGATAGAGCCTGGATTGCTGACTACTTAATCTCTCTCATACTAATAGTTGCTTTCATCGCCCTGTTTCCCCTGTACATGGGGTTTTTCTTGAGTGAATAGCATTTTGTAGAACTTCTACCTTTCTGTGCATATTCATGTGCTTCTAGGCTTGCTGTTACCCAATAATTGTATGTAAAATTTATTGTTTTGCCTTTAGCATCTCGTTTTCTCTTTCTTTCACAATGTATAGAGCTATTGGTCCTGGGATGCTGTAACCTTCCCTTTCTTTTGTGGAAA-GCGTGCTTCCTGCCAAAATTGTGAGATGGATTTCAGAACAGTCTCACTGGCC]

[+] EMBL AK072831             [TAGTGTAGTGCGCGCTGTACTGTTCCCACGTCGCGTCGAGGCATCGGTTCGAGCGAGCGCGCGCGCGACGCGGGCGAGGCTCCGGCTCGATTCCGTCGCCACCCTGTGACAGCAGCAGCCACCGCCCACCGCCGCCGCCGCTTTCTGGAGGCTTCCCGTTGGCTCGTGGTTGCGGGGGGACTCGCGGAGTCGCGGTTGCGAGTTGGCTGCCTGCTACTCTGCTAGTGTGCTAAGCCTGCCTTTTAGTTAGTCTGGGAGCACGCTACTGCTACTTTCCCCAATCCAATCCAATCCAATCCAATCCTCGCCGGCGTTGGTTCGCTCGATCGGCGCGGCGCGGATGGAGACGCTCAGGAAGCAGGCCAGCAAGCTCAGGGAGCACGTCGCCAAGCAGCAGCAGGCTGTTCGGAAGCAGTTCAGTGCACGCTATAACCAGGATCCTTCTCTTGTCGATGAGGCGGAACTTGAGTGCCACCAGAATCTTCAGAGGCTATACAACAGTACAAGAGCTGCTAAACATTTCCAACGAAGTATTGTACGAGGTGTCGAGGGTTTCATTGCTGTCAGCACCAAACAGATGGAGATTGTGAAAAAGCTAGCTGAGGATTGTTGCAGATATGGAAACGACAATCAAAATTTTGGTTTTATTCTTGCAAGGGCTTCAGTTGAGTTTGGTAATTCCCATAGCCAAATGGAGAAAGAGCGGGAGAATCTTCTTAAATTTCTTGGAGAGCAGGTTTTTGAGCCTCTTCGAGAAATGATAATGAGTGCTCCTCTTGAAGATGCCCGCCTGTTAACTTACCGTTATCAACGGATCAGACAAGATATGGAATCTCAGATAGCTGATGTGATGAGAAAGCAACTGAAGTCCAAGGAGAGTAGCGGTAATGCAGATAATTCTGTGAAACTGCAACATGCAGAATCAAAATTATCTGAGCTCCGAACTACATTATCAGCATTAGGAAGAGAGGCAACTGCAGCTATGGAGGCTGTGGAGGTTCAGCAACAACAGGTTACCTTTGACCGTCTCCTTGCAATGGTTGATGCTGAGAGAGCTTATCATCAGAATGCTGCTGATATTCTGAACAAACTTCACGACGAGATGGTCCAAGCAAAACACCATGATGAGCCGGAAAACCATTATGATGAGACATCATCAGATCCTAAAACAGCTGCAACACATGAGCATTCACGTAGCACATCCGAAGATCACATATTTACTAATACTAGTGAACCTACAAGGACTGAAACCAGTGAACCTACAAGGACTGAAACTAGTGAACCTACAAGGAATGGTCAGGAAGTGCATTATGTTGGAGAGGTAATCCATCCATTCGATGCTCAGGCTGATGGCGAGCTCAGTATTTCCGTGGGAGATTATGTTGTGGTCCGGCAGGTGGCTCCCAATGGGTGGTCTGAAGGGGAATGCAAAGGAAAAGCTGGCTGGTTCCCATCTGCCTATGTGGAGCAGAGGGACAAAGCCCCGGCAAGTAAGGTGATAGAGCCTGGATTGCTGACTACTTAATCTCTCTCATACTAATAGTTGCTTTCATCGCCCTGTTTCCCCTGTACATGGGGTTTTTCTTGAGTGAATAGCATTTTGTAGAACTTCTACCTTTCTGTGCATATTCATGTGCTTCTAGGCTTGCTGTTACCCAATAATTGTATGTAAAATTTATTGTTTTGCCTTTAGCATCTCGTTTTCTCTTTCTTTCACAATGTATAGAGCTATTGGTCCTGGGATGCTGTAACCTTCCCTTTCTTTTGTGGAAA GCGTGCTTCCTGCCAAAATTGTGAGATGGATTTCAGAACAGTCTCACTGGCC]
[+] EMBL CB643632             [  GTGTCCTGCGCGCTGTACTGTTCCCACGTCGCGTCGAGGCATCGGTTCGAGCGAGCGCGCGCGCGACGCGGGCGAGGCTCCGGCTCGATTCCGTCGCCACCCTGTGACAGCAGCAGCCACCGCCCACCGCCGCCGCCGCTTTCTGGAGGCTTCCCGTTGGCTCGTGGTTGCGGGGGGACTCGCGGAGTCGCGGTTGCGAGTTGGCTGCCTGCTACTCTGCTAGTGTGCTAAGCCTGCCTTTTAGTTAGTCTGGGAGCACGCTACTGCTACTTTCCCCAATCCAATCCAATCCAATCCAATCCTCGCCGGCGTTGGTTCCCTCGATCGGCGCGGCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CB643633             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AGCAACAACAGGTTACCTTTGACCGTCTCCTTGCAATGGTTGATGCTGAGAGAGCTTATCATCAGAATGCTGCTGATATTCTGAACAAACTTCACGACGAGATGGTCCAAGCAAAACACCATGATGAGCCGGAAAACCATTATGATGAGACATCATCAGATCCTAAAACAGCTGCAACACATGAGCATTCACGTAGCACATCCGAAGATCACATATTTACTAATACTAGTGAACCTACAAGGACTGAAACCAGTGAACCTACAAGGACTGAAACTAGTGAACCTACAAGGAATGGTCAGGAAGTGCATTATGTTGGAGAGGTAATCCATCCATTCGATGCTCAGGCTGATGGCGAGCTCAGTATTTCCGTGGGAGATTATGTTGTGGTCCGGCAGGTGGCTCCCAATGGGTGGTCTGAAGGGGAATGCAAAGGAAAAGCTGGCTGGTTCCCATCTGCCTATGTGGAGCAGAGGGACAAAGCCCCGGCAAGTAAGGTGATAGAGCCTGGATTGCTGACTACTTAATCTCTCTCATACTAATAGTTGCTTTCATCGCCCTGTTTCCCCTGTACATGGGGTTTTTCTTGAGTGAATAGCATTTTGTAGAACTTCTACCTTTCTGTGCATATTCATGTGCTTCTAGGCTTGCTGTTACCCAATAATTGTATGTAAAATTTATTGTTTTGCCTTTAGCATCTCGTTTTCTCTTTCTTTCACAATGTATAGAGCTATTGGTCCTGGGATGCTGTAACCAGGCCTTTCTTTTGTGGAAACGCGTG                                               ]


>consensus_6049#0 TAGTGTAGTGCGCGCTGTACTGTTCCCACGTCGCGTCGAGGCATCGGTTCGAGCGAGCGC GCGCGCGACGCGGGCGAGGCTCCGGCTCGATTCCGTCGCCACCCTGTGACAGCAGCAGCC ACCGCCCACCGCCGCCGCCGCTTTCTGGAGGCTTCCCGTTGGCTCGTGGTTGCGGGGGGA CTCGCGGAGTCGCGGTTGCGAGTTGGCTGCCTGCTACTCTGCTAGTGTGCTAAGCCTGCC TTTTAGTTAGTCTGGGAGCACGCTACTGCTACTTTCCCCAATCCAATCCAATCCAATCCA ATCCTCGCCGGCGTTGGTTCGCTCGATCGGCGCGGCGCGGATGGAGACGCTCAGGAAGCA GGCCAGCAAGCTCAGGGAGCACGTCGCCAAGCAGCAGCAGGCTGTTCGGAAGCAGTTCAG TGCACGCTATAACCAGGATCCTTCTCTTGTCGATGAGGCGGAACTTGAGTGCCACCAGAA TCTTCAGAGGCTATACAACAGTACAAGAGCTGCTAAACATTTCCAACGAAGTATTGTACG AGGTGTCGAGGGTTTCATTGCTGTCAGCACCAAACAGATGGAGATTGTGAAAAAGCTAGC TGAGGATTGTTGCAGATATGGAAACGACAATCAAAATTTTGGTTTTATTCTTGCAAGGGC TTCAGTTGAGTTTGGTAATTCCCATAGCCAAATGGAGAAAGAGCGGGAGAATCTTCTTAA ATTTCTTGGAGAGCAGGTTTTTGAGCCTCTTCGAGAAATGATAATGAGTGCTCCTCTTGA AGATGCCCGCCTGTTAACTTACCGTTATCAACGGATCAGACAAGATATGGAATCTCAGAT AGCTGATGTGATGAGAAAGCAACTGAAGTCCAAGGAGAGTAGCGGTAATGCAGATAATTC TGTGAAACTGCAACATGCAGAATCAAAATTATCTGAGCTCCGAACTACATTATCAGCATT AGGAAGAGAGGCAACTGCAGCTATGGAGGCTGTGGAGGTTCAGCAACAACAGGTTACCTT TGACCGTCTCCTTGCAATGGTTGATGCTGAGAGAGCTTATCATCAGAATGCTGCTGATAT TCTGAACAAACTTCACGACGAGATGGTCCAAGCAAAACACCATGATGAGCCGGAAAACCA TTATGATGAGACATCATCAGATCCTAAAACAGCTGCAACACATGAGCATTCACGTAGCAC ATCCGAAGATCACATATTTACTAATACTAGTGAACCTACAAGGACTGAAACCAGTGAACC TACAAGGACTGAAACTAGTGAACCTACAAGGAATGGTCAGGAAGTGCATTATGTTGGAGA GGTAATCCATCCATTCGATGCTCAGGCTGATGGCGAGCTCAGTATTTCCGTGGGAGATTA TGTTGTGGTCCGGCAGGTGGCTCCCAATGGGTGGTCTGAAGGGGAATGCAAAGGAAAAGC TGGCTGGTTCCCATCTGCCTATGTGGAGCAGAGGGACAAAGCCCCGGCAAGTAAGGTGAT AGAGCCTGGATTGCTGACTACTTAATCTCTCTCATACTAATAGTTGCTTTCATCGCCCTG TTTCCCCTGTACATGGGGTTTTTCTTGAGTGAATAGCATTTTGTAGAACTTCTACCTTTC TGTGCATATTCATGTGCTTCTAGGCTTGCTGTTACCCAATAATTGTATGTAAAATTTATT GTTTTGCCTTTAGCATCTCGTTTTCTCTTTCTTTCACAATGTATAGAGCTATTGGTCCTG GGATGCTGTAACCTTCCCTTTCTTTTGTGGAAAGCGTGCTTCCTGCCAAAATTGTGAGAT GGATTTCAGAACAGTCTCACTGGCC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)