These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6052#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 997 fasta sequence [CGGTGCAGATGAAACCACATGCGAAGAATGGACTATACCATGTAGGATTCTGCCTAACAAGAATCGCTCTGATCGTTGAACCATCTGGGTAGGTTGCACTGTATGGGATGGTGGCATTGTTGTTCGTCCAAAGAGAATTAATGTTGGCAATGGGGCTGGGATAATCAAAGGACCAAGAATGGGAGAAGGGAATGGGCAGCGAGAACAAGAGGAGGAGGAACAGCAAGCTTTCAGCCCAAGGCATGGTTGGTATGTGAGTTCTTCTTGGATGGGAGATGGGGACAGATTATGTGATCTTTTGTTTGAGACGAAAGGTTTCAGAGCCTCAGATGAGAGGCTAGGAGTATGGAGCTTGTTTTGGGAGGCAACATCGTACAATGGCAGGTGCTCGTGTATCAGGTTAAACAATTGGACAATTGGATGAGTGGAGAGTTAGTGGTGCTCAAGTCCCATTATGCTAATATAATTTGCACAGGAGAAACAATCTGCTGACGGCTGTTGATACTTGATATCCACTGCCACCTTTCAATGTAGTTCTGTGCTACATGAAGCAGTCAATCATATAGCTTCTCATGCCTCCTTTTGCTAAAATGATAGGAGTGTATTAACCCAGGTAATTTCTGCAAACCAAGGTGCCGTTTGATCAGCTGACTACTTACTGCACAAACTGGGTCAGGAATCAGTGGGCCTTTGGTTTGTTAGTATAGACTTAAACAAATTGTTGGAAGGTAGTCATGTAGAGCACTAGTTATTAGCAGCCAATTGTAGTCATGCAGCGCACTCATGCAACCGTGCAGGTTCAACTTCTTCACCGACATCAGCAACCTGATGAATTTTGCACGCACGGTCGTTCTTCCCGTTGACATATTTGATAATCTCGATGCTGGTGTTTGCAAATCCTACATTTTGTACTTGTATATTTCAACAAGAAACTGGGTCGGTGACTACTTACTAGAAGCAATGCTATTTGACCGTCATTCCTTTCTTAAAAAAAAAA] [+] EMBL AK064586 [CGGTGCAGATGAAACCACATGCGAAGAATGGACTATACCATGTAGGATTCTGCCTAACAAGAATCGCTCTGATCGTTGAACCATCTGGGTAGGTTGCACTGTATGGGATGGTGGCATTGTTGTTCGTCCAAAGAGAATTAATGTTGGCAATGGGGCTGGGATAATCAAAGGACCAAGAATGGGAGAAGGGAATGGGCAGCGAGAACAAGAGGAGGAGGAACAGCAAGCTTTCAGCCCAAGGCATGGTTGGTATGTGAGTTCTTCTTGGATGGGAGATGGGGACAGATTATGTGATCTTTTGTTTGAGACGAAAGGTTTCAGAGCCTCAGATGAGAGGCTAGGAGTATGGAGCTTGTTTTGGGAGGCAACATCGTACAATGGCAGGTGCTCGTGTATCAGGTTAAACAATTGGACAATTGGATGAGTGGAGAGTTAGTGGTGCTCAAGTCCCATTATGCTAATATAATTTGCACAGGAGAAACAATCTGCTGACGGCTGTTGATACTTGATATCCACTGCCACCTTTCAATGTAGTTCTGTGCTACATGAAGCAGTCAATCATATAGCTTCTCATGCCTCCTTTTGCTAAAATGATAGGAGTGTATTAACCCAGGTAATTTCTGCAAACCAAGGTGCCGTTTGATCAGCTGACTACTTACTGCACAAACTGGGTCAGGAATCAGTGGGCCTTTGGTTTGTTAGTATAGACTTAAACAAATTGTTGGAAGGTAGTCATGTAGAGCACTAGTTATTAGCAGCCAATTGTAGTCATGCAGCGCACTCATGCAACCGTGCAGGTTCAACTTCTTCACCGACATCAGCAACCTGATGAATTTTGCACGCACGGTCGTTCTTCCCGTTGACATATTTGATAATCTCGATGCTGGTGTTTGCAAATCCTACATTTTGTACTTGTATATTTCAACAAGAAACTGGGTCGGTGAC ] [-] EMBL CA761710 [ cCCTCAGATGAGAGGCTAGGAGTATGGAGCTTGTTTT GGAGGCAACATCGTACAATGGCAGGTGCTCGTGTATCAGGGTAAACAATTGGACAATTGGATGAGTGGAGAGTTAGTGGTGCTCAAGTCCCATTATGCTAATATAATTTGCACAGGAGAAACAATCTGCTGACGGCTGTTGATACTTGACATCCACTGCCACCTTTCAATGTAGTTCTGTGCTACATGAAGCAGTCAATCATATAGCTTCTCATGCCTCCTTTTGCTAAAATGATAGGAGTGTATTAACCCAGGTAATTTCTGCAAACCAAGGTGCCGTTTGATCAGCTGACTACTTACTGCACAAACTGGGTCAGGAATCAGTGGGCCTTTGGTTTGTTAGTATAGACTTAAACAAATTGTTGGAAGGTAGTCATGTAGAGCACTAGTTATTAGCAGCCAATTGTAGTCATGCAGCGCACTCATGCAACCGTGCAGGTTCAACTTTTTTACCGACATAAGCAACCTGATGAATTTTGCACGCACGGTCGTTCTTCCCGTTGACATATATAATAATCTCGATGCTGGGGTTTGCAAATCTTACATTTTGTACTTGTATATTTCAACAAGAAACTGGGTCGGTGACTACTTACTAGAAGCAATGCTATTTGACCGTCATTCCTTTCTTAAAAAAAAAA] consensusID : consensus_6052#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence [AAGAATGGGAGAAGGGAATGGGCAGCGAGAACAAGAGGAGGAGGAACAGCAAGCTTTCAGCCCAAGGCATGGTTGGTATGTGAGTTCTTCTTGGATGGGAGATGGGGACAGATTATGTGATCTTTTGTTTGAGACGAAAGGTTTCAGAGCCTCAGATGAGAGGCTAGGAGTATGGAGCTTGTTTTGGGAGGCAACATCGTACAATGGCAGGTGCTCGTGTATCAGGTTAAACAATTGGACAATTGGATGAGTGGAGAGTTAGTGGTGCTCAAGTCCCATTATGCTAATATAATTTGCACAGGAGAAACAATCTGCTGACGGCTGTTGATACTTGATATCCACTGCCACCTTTCAATGTAGTTCTGTGCTACATGAAGCAGTCAATCATATAGCTTCTCATGCCTCCTTTTGCTAAAATGATAGGAGTGTATTAACCCAGTTNTGGTTGGCTAGCATCACGACTCTTTCTAAATCGTACAATCAAGATCAGCCGTGGCATTAT] [+] EMBL CF304829 [AAGAATGGGAGAAGGGAATGGGCAGCGAGAACAAGAGGAGGAGGAACAGCAAGCTTTCAGCCCAAGGCATGGTTGGTATGTGAGTTCTTCTTGGATGGGAGATGGGGACAGATTATGTGATCTTTTGTTTGAGACGAAAGGTTTCAGAGCCTCAGATGAGAGGCTAGGAGTATGGAGCTTGTTTTGGGAGGCAACATCGTACAATGGCAGGTGCTCGTGTATCAGGTTAAACAATTGGACAATTGGATGAGTGGAGAGTTAGTGGTGCTCAAGTCCCATTATGCTAATATAATTTGCACAGGAGAAACAATCTGCTGACGGCTGTTGATACTTGATATCCACTGCCACCTTTCAATGTAGTTCTGTGCTACATGAAGCAGTCAATCATATAGCTTCTCATGCCTCCTTTTGCTAAAATGATAGGAGTGTATTAACCCAGTTNTGGTTGGCTAGCATCACGACTCTTTCTAAATCGTACAATCAAGATCAGCCGTGGCATTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6052#0 CGGTGCAGATGAAACCACATGCGAAGAATGGACTATACCATGTAGGATTCTGCCTAACAA 60 consensus_6052#1 ------------------------------------------------------------ consensus_6052#0 GAATCGCTCTGATCGTTGAACCATCTGGGTAGGTTGCACTGTATGGGATGGTGGCATTGT 120 consensus_6052#1 ------------------------------------------------------------ consensus_6052#0 TGTTCGTCCAAAGAGAATTAATGTTGGCAATGGGGCTGGGATAATCAAAGGACCAAGAAT 180 consensus_6052#1 ------------------------------------------------------AAGAAT 6 ****** consensus_6052#0 GGGAGAAGGGAATGGGCAGCGAGAACAAGAGGAGGAGGAACAGCAAGCTTTCAGCCCAAG 240 consensus_6052#1 GGGAGAAGGGAATGGGCAGCGAGAACAAGAGGAGGAGGAACAGCAAGCTTTCAGCCCAAG 66 ************************************************************ consensus_6052#0 GCATGGTTGGTATGTGAGTTCTTCTTGGATGGGAGATGGGGACAGATTATGTGATCTTTT 300 consensus_6052#1 GCATGGTTGGTATGTGAGTTCTTCTTGGATGGGAGATGGGGACAGATTATGTGATCTTTT 126 ************************************************************ consensus_6052#0 GTTTGAGACGAAAGGTTTCAGAGCCTCAGATGAGAGGCTAGGAGTATGGAGCTTGTTTTG 360 consensus_6052#1 GTTTGAGACGAAAGGTTTCAGAGCCTCAGATGAGAGGCTAGGAGTATGGAGCTTGTTTTG 186 ************************************************************ consensus_6052#0 GGAGGCAACATCGTACAATGGCAGGTGCTCGTGTATCAGGTTAAACAATTGGACAATTGG 420 consensus_6052#1 GGAGGCAACATCGTACAATGGCAGGTGCTCGTGTATCAGGTTAAACAATTGGACAATTGG 246 ************************************************************ consensus_6052#0 ATGAGTGGAGAGTTAGTGGTGCTCAAGTCCCATTATGCTAATATAATTTGCACAGGAGAA 480 consensus_6052#1 ATGAGTGGAGAGTTAGTGGTGCTCAAGTCCCATTATGCTAATATAATTTGCACAGGAGAA 306 ************************************************************ consensus_6052#0 ACAATCTGCTGACGGCTGTTGATACTTGATATCCACTGCCACCTTTCAATGTAGTTCTGT 540 consensus_6052#1 ACAATCTGCTGACGGCTGTTGATACTTGATATCCACTGCCACCTTTCAATGTAGTTCTGT 366 ************************************************************ consensus_6052#0 GCTACATGAAGCAGTCAATCATATAGCTTCTCATGCCTCCTTTTGCTAAAATGATAGGAG 600 consensus_6052#1 GCTACATGAAGCAGTCAATCATATAGCTTCTCATGCCTCCTTTTGCTAAAATGATAGGAG 426 ************************************************************ consensus_6052#0 TGTATTAACCCAGGTAATTTCTGCAAACCAAGGTGCCGTTTGATCAGCTGACTACTTACT 660 consensus_6052#1 TGTATTAACCCAG----TTNTGGTTGGCTAGCATCACGACT------CTTTCTA--AATC 474 ************* ** * * * * ** * ** *** * consensus_6052#0 GCACAAACTGGGTCAGGAATCAGTGGGCCTTTGGTTTGTTAGTATAGACTTAAACAAATT 720 consensus_6052#1 GTACAATCAAGATCAG----CCGTGGCATTAT---------------------------- 502 * **** * * **** * **** * * consensus_6052#0 GTTGGAAGGTAGTCATGTAGAGCACTAGTTATTAGCAGCCAATTGTAGTCATGCAGCGCA 780 consensus_6052#1 ------------------------------------------------------------ consensus_6052#0 CTCATGCAACCGTGCAGGTTCAACTTCTTCACCGACATCAGCAACCTGATGAATTTTGCA 840 consensus_6052#1 ------------------------------------------------------------ consensus_6052#0 CGCACGGTCGTTCTTCCCGTTGACATATTTGATAATCTCGATGCTGGTGTTTGCAAATCC 900 consensus_6052#1 ------------------------------------------------------------ consensus_6052#0 TACATTTTGTACTTGTATATTTCAACAAGAAACTGGGTCGGTGACTACTTACTAGAAGCA 960 consensus_6052#1 ------------------------------------------------------------ consensus_6052#0 ATGCTATTTGACCGTCATTCCTTTCTTAAAAAAAAAA 997 consensus_6052#1 ------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||