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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6058#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 868 fasta sequence
[TTTGGGCGAGGGTGACGGCCGCGTTCGCCATTGCCACCTCACTGCTCACGCTACCGCCTCTAAAGCAAAAGGACGATGCTCTCCCCCTCCTCTTTCGTCGTGGCTATCTCCATCGTCTCTTTCCTTGACCACAGCGGCAATGGGGTAAAGAGAGAATAAAAGATACCTGAAATCCACTTTAGCCCGGACCATTCCTGCCGGCCGGTGAGTGGCTCGCTGGCCCCGCCGCCGGCGGTGATACCCACAGCCATCCTGCGAGCTTTATATAAGCCGCAGGTGAGGGAGACGCTCTCGCACCGCAGAGCAAGAAGAGTTTGCAGATTAACTCGATCTCTGGACAAGCTTTGAGTACTGATCTCGGAGTGATCTTTGTTGTTGTGAGTTGTGACCGGCCTGCAGCCGGAGAAAGGCGGATTGAGATGGCGTTTCTGGACGGACTGTACGGCGGCGGCGGCGGCCGGAGGAGGATGGCGACGACAGCGAAGGGCGCCGGCGCAGGGAGGCGGCGGTCGTCGGCGGCGGTGGCGGCGCCGCGGCCGGTGAGGCAGCTGTACTGGAAGCTGAGGTCGAGGTTGCGGTCGTCGTCGTCGAAGCGGCACGGCGGCGGCGGCGCGGCGGCGAGGTTCGGGTACGACCTTCAGAGCTATTCCCGGAACTTCGACGACGGCGGCCTCGATCGATCGTCTCCGGCCAGCTACCGCTTCTAGGCTCATGTAGCTAGGTAGCTAGAGAAGAGTGCCCTGCCATTGCTGGAGACCGGAGAGTGCAATATATTCTGGTCTACCTGCAATAATTATGCAAGTGGTATTAGTGTTAGATCTACTTGTAATTGTAGTGTTGTTCTGTCTTCATACAATTTGGTCAGATT]
[+] EMBL AK107743 [TTTGGGCGAGGGTGACGGCCGCGTTCGCCATTGCCACCTCACTGCTCACGCTACCGCCTCTAAAGCAAAAGGACGATGCTCTCCCCCTCCTCTTTCGTCGTGGCTATCTCCATCGTCTCTTTCCTTGACCACAGCGGCAATGGGGTAAAGAGAGAATAAAAGATACCTGAAATCCACTTTAGCCCGGACCATTCCTGCCGGCCGGTGAGTGGCTCGCTGGCCCCGCCGCCGGCGGTGATACCCACAGCCATCCTGCGAGCTTTATATAAGCCGCAGGTGAGGGAGACGCTCTCGCACCGCAGAGCAAGAAGAGTTTGCAGATTAACTCGATCTCTGGACAAGCTTTGAGTACTGATCTCGGAGTGATCTTTGTTGTTGTGAGTTGTGACCGGCCTGCAGCCGGAGAAAGGCGGATTGAGATGGCGTTTCTGGACGGACTGTACGGCGGCGGCGGCGGCCGGAGGAGGATGGCGACGACAGCGAAGGGCGCCGGCGCAGGGAGGCGGCGGTCGTCGGCGGCGGTGGCGGCGCCGCGGCCGGTGAGGCAGCTGTACTGGAAGCTGAGGTCGAGGTTGCGGTCGTCGTCGTCGAAGCGGCACGGCGGCGGCGGCGCGGCGGCGAGGTTCGGGTACGACCTTCAGAGCTATTCCCGGAACTTCGACGACGGCGGCCTCGATCGATCGTCTCCGGCCAGCTACCGCTTCTAGGCTCATGTAGCTAGGTAGCTAGAGAAGAGTGCCCTGCCATTGCTGGAGACCGGAGAGTGCAATATATTCTGGTCTACCTGCAATAATTATGCAAGTGGTATTAGTGTTAGATCTACTTGTAATTGTAGTGTTGTTCTGTCTTCATACAATTTGGTCAGATT]
consensusID : consensus_6058#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 858 fasta sequence
[CATTGTTTCTGTCCTTGACCACAGCGGCAATGGGAGAGAGAGAGAGAAAAAAAGATACCTGAAATCCACTTTAGCCCGGACCATTCCGGCCGGCCGGTGAGTGGCCGGCGGGCCCCGCCACCGGCGATGATGCCCAGCCATCCTGCGAGCTTTATATAAGCCGCAGGTGAGGGACGCTAGCTTAGCTCACAGCAGCGCGGCGAAACAAGATTTGCAAAAACTCCTAGGCTTGTGTTTGATCTCGAGTACAGCAAGTCGATCGAGAGAGTGATCTTAATTTTGTCAGTGAGAAGAGATGGCGTTTCTGGACGGACTGTACGGCAGCCGGAGGAGGATGGCGACAGCGAAGGGCGCCGGCGTAGCAGGGAGGCGGCGGTCGTCGTCGGCGGTGGCGGCGCCGCGGCCGGTGAGGCAGCTGTACTGGAAGCTGAGGTCGAGGTTGCGGTCGTCGTCGAAGAGGCACGCCGGCGGCGCGGCGGCGGCGAGGTTCGGGTACGACCTGCAGAGCTACTCCCGCAACTTCGACGACGGCGTCGGCCTCGTCGTCTCCGGCCACCGCTTCTAGGCTCTCTAGCTAGGTAGCTCATTCGGTTCGATCCCGAGATCGCGCGCCCTGCCATTGCTGGAGACCGGAGATTATTGTTCTGGTCTACCTGCAACTCTGCAAGTGGTATTAGTGTTAGATTGTACTACTGTTTTTTTTTCATAGTGCTCATCTGGGATGGCAAAATTAATGGAGAAACTACGATCCTAACACGCTCTTGTTCATGTATTGTGTACATATACTGTATGGACAGTATGGTATGGAATGTATATATACGTACGTGACACATGAATATATTCGGTTGCCATAATAAG]
[+] EMBL AK108440 [CATTGTTTCTGTCCTTGACCACAGCGGCAATGGGAGAGAGAGAGAGAAAAAAAGATACCTGAAATCCACTTTAGCCCGGACCATTCCGGCCGGCCGGTGAGTGGCCGGCGGGCCCCGCCACCGGCGATGATGCCCAGCCATCCTGCGAGCTTTATATAAGCCGCAGGTGAGGGACGCTAGCTTAGCTCACAGCAGCGCGGCGAAACAAGATTTGCAAAAACTCCTAGGCTTGTGTTTGATCTCGAGTACAGCAAGTCGATCGAGAGAGTGATCTTAATTTTGTCAGTGAGAAGAGATGGCGTTTCTGGACGGACTGTACGGCAGCCGGAGGAGGATGGCGACAGCGAAGGGCGCCGGCGTAGCAGGGAGGCGGCGGTCGTCGTCGGCGGTGGCGGCGCCGCGGCCGGTGAGGCAGCTGTACTGGAAGCTGAGGTCGAGGTTGCGGTCGTCGTCGAAGAGGCACGCCGGCGGCGCGGCGGCGGCGAGGTTCGGGTACGACCTGCAGAGCTACTCCCGCAACTTCGACGACGGCGTCGGCCTCGTCGTCTCCGGCCACCGCTTCTAGGCTCTCTAGCTAGGTAGCTCATTCGGTTCGATCCCGAGATCGCGCGCCCTGCCATTGCTGGAGACCGGAGATTATTGTTCTGGTCTACCTGCAACTCTGCAAGTGGTATTAGTGTTAGATTGTACTACTGTTTTTTTTTCATAGTGCTCATCTGGGATGGCAAAATTAATGGAGAAACTACGATCCTAACACGCTCTTGTTCATGTATTGTGTACATATACTGTATGGACAGTATGGTATGGAATGTATATATACGTACGTGACACATGAATATATTCGGTTGCCATAATAAG]
[+] EMBL AU183290 [ CAAAAACTCCTAGGCTTGTGTTTGATCTCGAGTACAGCAAGTCGATCGAGAGAGTGATCTTAATTTTGTCAGTGAGAAGAGATGGCGTTTCTGGACGGACTGTACGGCAGCCGGAGGAGGATGGCGACAGCGAAGGGCGCCGGCGTAGCAGGGAGGCGGCGGTCGTCGTCGGCGGTGGCGGCGCCGCGGCCGGTGAGGCAGCTGTACTGGAAGCTGAGGTCGAGGTTGCGGTCGTCGTCGAAGAGGCACGCCGGCGGCGCGGCGGCGGCGAGGTTCGGGTACGACCTGCAGAGCTACTCCCGCAACTTCGACGACGGCGTCGGCCTCGTCGTCTCCGGCCACCGCTTCTAGGCTCTCTAGCTAGGTAGCTCATTCGGTTCGATCCCGAGATCGCGCGCCCTGCCATTGCTGGAGACCGGAGATTATTGTT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6058#0 TTTGGGCGAGGGTGACGGCCGCGTTCGCCATTGCCACCTCACTGCTCACGCTACCGCCTC 60
consensus_6058#1 ------------------------------------------------------------
consensus_6058#0 TAAAGCAAAAGGACGATGCTCTCCCCCTCCTCTTTCGTCGTGGCTATCTCCATCGTCTCT 120
consensus_6058#1 --------------------------------------------------CATTGTTTCT 10
*** ** ***
consensus_6058#0 TTCCTTGACCACAGCGGCAATGGGGTAAAGAGAGA--ATAAAAGATACCTGAAATCCACT 178
consensus_6058#1 GTCCTTGACCACAGCGGCAATGGGAGAGAGAGAGAGAAAAAAAGATACCTGAAATCCACT 70
*********************** * ******* * *********************
consensus_6058#0 TTAGCCCGGACCATTCCTGCCGGCCGGTGAGTGGCTCGCTGGCCCCGCCGCCGGCGGTGA 238
consensus_6058#1 TTAGCCCGGACCATTCCGGCCGGCCGGTGAGTGGCCGGCGGGCCCCGCCACCGGCGATGA 130
***************** ***************** ** ********* ****** ***
consensus_6058#0 TACCCACAGCCATCCTGCGAGCTTTATATAAGCCGCAGGTGAGGGAGACGCTCTCGCACC 298
consensus_6058#1 TGCCCA--GCCATCCTGCGAGCTTTATATAAGCCGCAGGTGAGGGA--CGCTAGCTTAGC 186
* **** ************************************** **** * * *
consensus_6058#0 GCAGAGCAAGAAGAGTTTGCA-GATTAACTCGATCTCTGGACAAGCTTTGAGTACTGATC 357
consensus_6058#1 TCACAGCAGCGCGGCGAAACAAGATTTGCAAAAACTC----CTAGGCTTGTGT-TTGATC 241
** **** * ** **** * * *** * ** *** ** *****
consensus_6058#0 TCGGAGTGATCTTTGTTGTTGTGAGTTGTGACCGGCCTGCAGCCGGAGAAAGGCGGATTG 417
consensus_6058#1 TCG-AGTACAGCAAGTCGATCGAGAGAGTGATCTTAATTTTGTCAGTGAGAAG------- 293
*** *** ** * * **** * * * * * ** * *
consensus_6058#0 AGATGGCGTTTCTGGACGGACTGTACGGCGGCGGCGGCGGCCGGAGGAGGATGGCGACGA 477
consensus_6058#1 AGATGGCGTTTCTGGACGGACTGTACGGCAGC---------CGGAGGAGGATGGCGA--- 341
***************************** ** ****************
consensus_6058#0 CAGCGAAGGGCGCCGGCG---CAGGGAGGCGGCGGTCGTCGGCGGCGGTGGCGGCGCCGC 534
consensus_6058#1 CAGCGAAGGGCGCCGGCGTAGCAGGGAGGCGGCGGTCGTCGTCGGCGGTGGCGGCGCCGC 401
****************** ******************** ******************
consensus_6058#0 GGCCGGTGAGGCAGCTGTACTGGAAGCTGAGGTCGAGGTTGCGGTCGTCGTCGTCGAAGC 594
consensus_6058#1 GGCCGGTGAGGCAGCTGTACTGGAAGCTGAGGTCGAGGTTGCGGTCGTCGTC---GAAGA 458
**************************************************** ****
consensus_6058#0 GGCACGGCGGCGGCGGCGCGGCGGCGAGGTTCGGGTACGACCTTCAGAGCTATTCCCGGA 654
consensus_6058#1 GGCACGCCGGCGGCGCGGCGGCGGCGAGGTTCGGGTACGACCTGCAGAGCTACTCCCGCA 518
****** ******** ************************** ******** ***** *
consensus_6058#0 ACTTCGACGACGGCGGCCTCGATCGATCGTCTCCGGCCAGCTACCGCTTCTAGGCTCATG 714
consensus_6058#1 ACTTCGACGACGGCGTCGGC--CTCGTCGTCTCCGGCCA----CCGCTTCTAGGCTC-TC 571
*************** * * ************* ************** *
consensus_6058#0 TAGCTAGGTAGCTA---------------GAGAA-GAGTGCCCTGCCATTGCTGGAGACC 758
consensus_6058#1 TAGCTAGGTAGCTCATTCGGTTCGATCCCGAGATCGCGCGCCCTGCCATTGCTGGAGACC 631
************* **** * * *********************
consensus_6058#0 GGAGAGTGCAATATATTCTGGTCTACCTGCAATAATTATGCAAGTGGTATTAGTGTTAGA 818
consensus_6058#1 GGAGATTAT----TGTTCTGGTCTACCTGCA---ACTCTGCAAGTGGTATTAGTGTTAGA 684
***** * * **************** * * **********************
consensus_6058#0 T----CTACT----TGTAATTGTAGTGTTGTTCTGTCTTCATACAATT--TGGTCAGATT 868
consensus_6058#1 TTGTACTACTGTTTTTTTTTCATAGTGCTCATCTGGGATGGCAAAATTAATGGAGAAACT 744
* ***** * * * ***** * **** * * **** *** * * *
consensus_6058#0 ------------------------------------------------------------
consensus_6058#1 ACGATCCTAACACGCTCTTGTTCATGTATTGTGTACATATACTGTATGGACAGTATGGTA 804
consensus_6058#0 ------------------------------------------------------
consensus_6058#1 TGGAATGTATATATACGTACGTGACACATGAATATATTCGGTTGCCATAATAAG 858
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||