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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6065#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1739 fasta sequence
[TCCCGTCGTGCCGCCCCTCTCCTCCCGACTTCTCTCCCCGATGGCGGCGCTTCCCCACGTCCGGCGACAAGCAGCCAGCTGCAGATGCGCCATCTCTGCTCCATCGGCCATACTCTCCTCGGCATCGGCAACGGCGGCGGTCGGGCGGCGCCAAGCTTCAGCTCGGGCCAGATCAACGGCGCCCTCGCCGCCGGGCCTCCATGGAGAGCAGGTAGGCCTCGTCTCTACTCCTAACTTGGTCTGCGCGACGCGCTGAATCCATCCCGCAATTAGTTTTGTCCCACCTCGCTCATTTTGCGACAGAGCGACCTCTTTTTAAACTCTGATTGATTCTATTGTGTTGCCTCCCCGGAGACACCCACACCGACTAGATACAGCGGTAAGATCCCCACTGTGGCCACGGTTTGGCGGACACCTTCTGCTGTAAAAAAATAAAAATGGAGCAGTCATAAGGCCCCCTCCCGTTACGGGGCACGGCAGGCGCCTACCGGTTAGGCTGCATCCATCATACACGTTAAGATGTCAAATACGGCATACATACAGTCGGGTCTCTCGGTGGAGACAGCGCTAGACATTAGCGCTTTGCCTTTTTTGAAATTTTGTATCATCAAATTATTATTTTTCTGTTGATTAATCACGATAGCAGCAATGGAGGCCTGCATTTGAACCCCCTCTGCGTTTCAATTCCAATTTCCTTTGCATTTGTATTTGAATACCATATTTACCAGCTTAAATTATCTATGGTATAGACTACGGAATGTGTATAGCAAACTGGAAAAATTAGAGATGTGGCGATAGAGGAGAGCCTATCATCAGCAGGTATGCAAAGAATTTCCTGTGAAACGAAGTACTGAAATACTCTTAGCAGAGGTGATTTTTTTTAAGCCAGAGATGTGAATGATTTGTTCACGCTGCAAGACAATGGAAATAATGATTGAAGTGAAACATCAATCAAATATTTTCAGCCAATTGTCTGAAGATGTCAATACCGGGATTCCAAATAAAGCAATAAGATCGGCTATGCGCTGCTTTGGCTGCTCCGACAACCTCTGAGACTGAGCTGAGCTCATCCAAGCATGGACGAAGTATCCAACATTTTGAAGTCCTTTTTGTGCTCAAGGCATTCATTTTTCTCAGAGTGCAATCAATCATGAGGACATAATGCATGCTAATGATTACCAGAAGCTGCGCCTAGAAGAAGCAGAAGCTTCACAGGCGTCATAAAGGGAAGCTGAAGCTTTAAGGTTTTATGCCTATCATGGATACTTGGGAGTTGCAACAATTTTTCTGTTGCTACATGGACTGGATCATTGGACGAGCTGGTGCAGTGGTGCTGTTGGAGCACCATTCTGTTTTCAGGTGGGTGCTCTAAATGGCAAAGCATGTTCCCTGCTGAACTGTTTTAAGACCTCCTACTAGGAAGATACTAGTTCATTTTGAAGTCCTAATCCGCCAATCTACACCTTCATACGACTGCATGGTGGTTCAGTCAGCTCAATGAGCATAACTGAACATTTCAAGAAGTTTTTTTTAAGAACAAGAACCACATTCCGTCCATGGATATGCTGCTGTTTGAGAACCTGTTGGCAACGTTGCAAGGATGTGCAAATGAGGTGCTGAAACCTGACTACCACAAATTTTAGCTGTAGCTGGTCGGAGCAAAGTAATGTCTAGGTGTAACGCACTGTAAATTTGATAGATGAGACGCGTCCCTAAATAATATCCTTTTTAAGTCTTTG]
[+] EMBL AK106626 [TCCCGTCGTGCCGCCCCTCTCCTCCCGACTTCTCTCCCCGATGGCGGCGCTTCCCCACGTCCGGCGACAAGCAGCCAGCTGCAGATGCGCCATCTCTGCTCCATCGGCCATACTCTCCTCGGCATCGGCAACGGCGGCGGTCGGGCGGCGCCAAGCTTCAGCTCGGGCCAGATCAACGGCGCCCTCGCCGCCGGGCCTCCATGGAGAGCAGGTAGGCCTCGTCTCTACTCCTAACTTGGTCTGCGCGACGCGCTGAATCCATCCCGCAATTAGTTTTGTCCCACCTCGCTCATTTTGCGACAGAGCGACCTCTTTTTAAACTCTGATTGATTCTATTGTGTTGCCTCCCCGGAGACACCCACACCGACTAGATACAGCGGTAAGATCCCCACTGTGGCCACGGTTTGGCGGACACCTTCTGCTGTAAAAAAATAAAAATGGAGCAGTCATAAGGCCCCCTCCCGTTACGGGGCACGGCAGGCGCCTACCGGTTAGGCTGCATCCATCATACACGTTAAGATGTCAAATACGGCATACATACAGTCGGGTCTCTCGGTGGAGACAGCGCTAGACATTAGCGCTTTGCCTTTTTTGAAATTTTGTATCATCAAATTATTATTTTTCTGTTGATTAATCACGATAGCAGCAATGGAGGCCTGCATTTGAACCCCCTCTGCGTTTCAATTCCAATTTCCTTTGCATTTGTATTTGAATACCATATTTACCAGCTTAAATTATCTATGGTATAGACTACGGAATGTGTATAGCAAACTGGAAAAATTAGAGATGTGGCGATAGAGGAGAGCCTATCATCAGCAGGTATGCAAAGAATTTCCTGTGAAACGAAGTACTGAAATACTCTTAGCAGAGGTGATTTTTTTTAAGCCAGAGATGTGAATGATTTGTTCACGCTGCAAGACAATGGAAATAATGATTGAAGTGAAACATCAATCAAATATTTTCAGCCAATTGTCTGAAGATGTCAATACCGGGATTCCAAATAAAGCAATAAGATCGGCTATGCGCTGCTTTGGCTGCTCCGACAACCTCTGAGACTGAGCTGAGCTCATCCAAGCATGGACGAAGTATCCAACATTTTGAAGTCCTTTTTGTGCTCAAGGCATTCATTTTTCTCAGAGTGCAATCAATCATGAGGACATAATGCATGCTAATGATTACCAGAAGCTGCGCCTAGAAGAAGCAGAAGCTTCACAGGCGTCATAAAGGGAAGCTGAAGCTTTAAGGTTTTATGCCTATCATGGATACTTGGGAGTTGCAACAATTTTTCTGTTGCTACATGGACTGGATCATTGGACGAGCTGGTGCAGTGGTGCTGTTGGAGCACCATTCTGTTTTCAGGTGGGTGCTCTAAATGGCAAAGCATGTTCCCTGCTGAACTGTTTTAAGACCTCCTACTAGGAAGATACTAGTTCATTTTGAAGTCCTAATCCGCCAATCTACACCTTCATACGACTGCATGGTGGTTCAGTCAGCTCAATGAGCATAACTGAACATTTCAAGAAGTTTTTTTTAAGAACAAGAACCACATTCCGTCCATGGATATGCTGCTGTTTGAGAACCTGTTGGCAACGTTGCAAGGATGTGCAAATGAGGTGCTGAAACCTGACTACCACAAATTTTAGCTGTAGCTGGTCGGAGCAAAGTAATGTCTAGGTGTAACGCACTGTAAATTTGATAGATGAGACGCGTCCCTAAATAATATCCTTTTTAAGTCTTTG]
consensusID : consensus_6065#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 237 fasta sequence
[CGACTAGATACAGCGGTAAGATCCCCACTGTGGCCACGGTTTGGCGGACACCTTCTGCTGTAAAAAAATAAAAATGGAGCAGTCATAAGGTCCCCTCCCGTTACGGGGCACGGCAGGCGCCTACCGGTTAGGCTGCATCCATCATACACGTTAAGATGTCAAATACGGCATACATACAGTCGGGTCTCTCGGTGGAGACAGCGCTAGACATTAGCGCTTTGCCTTTTAAAAAAAAAA]
[+] EMBL OSC04831A [CGACTAGATACAGCGGTAAGATCCCCACTGTGGCCACGGTTTGGCGGACACCTTCTGCTGTAAAAAAATAAAAATGGAGCAGTCATAAGGTCCCCTCCCGTTACGGGGCACGGCAGGCGCCTACCGGTTAGGCTGCATCCATCATACACGTTAAGATGTCAAATACGGCATACATACAGTCGGGTCTCTCGGTGGAGACAGCGCTAGACATTAGCGCTTTGCCTTTTAAAAAAAAAA]
[+] EMBL AU183609 [CGACTAGATACAGCGGTAAGATCCCCACTGTGGCCACGGTTTGGCGGACACCTTCTGCTGTAAAAAAATAAAAATGGAGCAGTCATAAGGTCCCCTCCCGTTACGGGGCACGGCAGGCGCCTACCGGTTAGGCTGCATCCATCATACACGTTAAGATGTCAAATACGGCATACATACAGTCGGGTCTCTCGGTGGAGACAGCGCTAGACATTAGCGCTTTGCCTTTTAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6065#0 TCCCGTCGTGCCGCCCCTCTCCTCCCGACTTCTCTCCCCGATGGCGGCGCTTCCCCACGT 60
consensus_6065#1 ------------------------------------------------------------
consensus_6065#0 CCGGCGACAAGCAGCCAGCTGCAGATGCGCCATCTCTGCTCCATCGGCCATACTCTCCTC 120
consensus_6065#1 ------------------------------------------------------------
consensus_6065#0 GGCATCGGCAACGGCGGCGGTCGGGCGGCGCCAAGCTTCAGCTCGGGCCAGATCAACGGC 180
consensus_6065#1 ------------------------------------------------------------
consensus_6065#0 GCCCTCGCCGCCGGGCCTCCATGGAGAGCAGGTAGGCCTCGTCTCTACTCCTAACTTGGT 240
consensus_6065#1 ------------------------------------------------------------
consensus_6065#0 CTGCGCGACGCGCTGAATCCATCCCGCAATTAGTTTTGTCCCACCTCGCTCATTTTGCGA 300
consensus_6065#1 ------------------------------------------------------------
consensus_6065#0 CAGAGCGACCTCTTTTTAAACTCTGATTGATTCTATTGTGTTGCCTCCCCGGAGACACCC 360
consensus_6065#1 ------------------------------------------------------------
consensus_6065#0 ACACCGACTAGATACAGCGGTAAGATCCCCACTGTGGCCACGGTTTGGCGGACACCTTCT 420
consensus_6065#1 ----CGACTAGATACAGCGGTAAGATCCCCACTGTGGCCACGGTTTGGCGGACACCTTCT 56
********************************************************
consensus_6065#0 GCTGTAAAAAAATAAAAATGGAGCAGTCATAAGGCCCCCTCCCGTTACGGGGCACGGCAG 480
consensus_6065#1 GCTGTAAAAAAATAAAAATGGAGCAGTCATAAGGTCCCCTCCCGTTACGGGGCACGGCAG 116
********************************** *************************
consensus_6065#0 GCGCCTACCGGTTAGGCTGCATCCATCATACACGTTAAGATGTCAAATACGGCATACATA 540
consensus_6065#1 GCGCCTACCGGTTAGGCTGCATCCATCATACACGTTAAGATGTCAAATACGGCATACATA 176
************************************************************
consensus_6065#0 CAGTCGGGTCTCTCGGTGGAGACAGCGCTAGACATTAGCGCTTTGCCTTTTTTGAAATTT 600
consensus_6065#1 CAGTCGGGTCTCTCGGTGGAGACAGCGCTAGACATTAGCGCTTTGCCTTTTAAAAAAAAA 236
*************************************************** ***
consensus_6065#0 TGTATCATCAAATTATTATTTTTCTGTTGATTAATCACGATAGCAGCAATGGAGGCCTGC 660
consensus_6065#1 A----------------------------------------------------------- 237
consensus_6065#0 ATTTGAACCCCCTCTGCGTTTCAATTCCAATTTCCTTTGCATTTGTATTTGAATACCATA 720
consensus_6065#1 ------------------------------------------------------------
consensus_6065#0 TTTACCAGCTTAAATTATCTATGGTATAGACTACGGAATGTGTATAGCAAACTGGAAAAA 780
consensus_6065#1 ------------------------------------------------------------
consensus_6065#0 TTAGAGATGTGGCGATAGAGGAGAGCCTATCATCAGCAGGTATGCAAAGAATTTCCTGTG 840
consensus_6065#1 ------------------------------------------------------------
consensus_6065#0 AAACGAAGTACTGAAATACTCTTAGCAGAGGTGATTTTTTTTAAGCCAGAGATGTGAATG 900
consensus_6065#1 ------------------------------------------------------------
consensus_6065#0 ATTTGTTCACGCTGCAAGACAATGGAAATAATGATTGAAGTGAAACATCAATCAAATATT 960
consensus_6065#1 ------------------------------------------------------------
consensus_6065#0 TTCAGCCAATTGTCTGAAGATGTCAATACCGGGATTCCAAATAAAGCAATAAGATCGGCT 1020
consensus_6065#1 ------------------------------------------------------------
consensus_6065#0 ATGCGCTGCTTTGGCTGCTCCGACAACCTCTGAGACTGAGCTGAGCTCATCCAAGCATGG 1080
consensus_6065#1 ------------------------------------------------------------
consensus_6065#0 ACGAAGTATCCAACATTTTGAAGTCCTTTTTGTGCTCAAGGCATTCATTTTTCTCAGAGT 1140
consensus_6065#1 ------------------------------------------------------------
consensus_6065#0 GCAATCAATCATGAGGACATAATGCATGCTAATGATTACCAGAAGCTGCGCCTAGAAGAA 1200
consensus_6065#1 ------------------------------------------------------------
consensus_6065#0 GCAGAAGCTTCACAGGCGTCATAAAGGGAAGCTGAAGCTTTAAGGTTTTATGCCTATCAT 1260
consensus_6065#1 ------------------------------------------------------------
consensus_6065#0 GGATACTTGGGAGTTGCAACAATTTTTCTGTTGCTACATGGACTGGATCATTGGACGAGC 1320
consensus_6065#1 ------------------------------------------------------------
consensus_6065#0 TGGTGCAGTGGTGCTGTTGGAGCACCATTCTGTTTTCAGGTGGGTGCTCTAAATGGCAAA 1380
consensus_6065#1 ------------------------------------------------------------
consensus_6065#0 GCATGTTCCCTGCTGAACTGTTTTAAGACCTCCTACTAGGAAGATACTAGTTCATTTTGA 1440
consensus_6065#1 ------------------------------------------------------------
consensus_6065#0 AGTCCTAATCCGCCAATCTACACCTTCATACGACTGCATGGTGGTTCAGTCAGCTCAATG 1500
consensus_6065#1 ------------------------------------------------------------
consensus_6065#0 AGCATAACTGAACATTTCAAGAAGTTTTTTTTAAGAACAAGAACCACATTCCGTCCATGG 1560
consensus_6065#1 ------------------------------------------------------------
consensus_6065#0 ATATGCTGCTGTTTGAGAACCTGTTGGCAACGTTGCAAGGATGTGCAAATGAGGTGCTGA 1620
consensus_6065#1 ------------------------------------------------------------
consensus_6065#0 AACCTGACTACCACAAATTTTAGCTGTAGCTGGTCGGAGCAAAGTAATGTCTAGGTGTAA 1680
consensus_6065#1 ------------------------------------------------------------
consensus_6065#0 CGCACTGTAAATTTGATAGATGAGACGCGTCCCTAAATAATATCCTTTTTAAGTCTTTG 1739
consensus_6065#1 -----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||