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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6067#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1155 fasta sequence
[GCCTTTGCCCCGCCTTCCCTGCCCTTTTCTCTTGCTGAGCCGCTTCTGCATTGGCTTGTGATGATGGGGGCCACTTCTCCGTCAGGCCTGGAGCTCACCATGGCTGTCCCCGGCCTCAGCTCCTCTGGTTCAGAAGGGGCCGGTTGCAACAACAACAACGCCGGTGGCGGCTGCAACATGAGGGACCTGGACATCAACCAGCCGGCGAGCGGCGGCGAGGAGGAGGAGTTCCCGATGGGCAGCGTGGAGGAGGACGAGGAGGAGAGGGGCGTCGGTGGGCCCCACCGCCCCAAGAAGCTCCGCCTCTCCAAGGAGCAGTCCCGCCTCCTCGAGGAGAGCTTCCGCCTCAACCATACCCTCACGCCGAAGCAAAAGGAGGCCTTGGCGATCAAACTGAAGCTGCGGCCGAGGCAGGTGGAGGTCTGGTTTCAGAACCGTAGGGCAAGGACGAAGCTGAAGCAGACGGAGATGGAGTGCGAGTACCTGAAGCGCTGCTTCGGGTCGCTGACGGAGGAGAACCGCCGGCTGCAGCGGGAGGTGGAGGAGCTGCGGGCGATGCGGGTGGCCCCGCCCACGGTGCTCTCGCCGCACACCAGGCAGCCGCTCCCGGCGTCCGCGCTCACCATGTGCCCCCGCTGCGAGCGCATCACCGCCGCCACCGGCCCGCCTGCCGTGCGCCCGCCGCCGTCGTCAGCCGCCGCCGCCGCCCCCTCGCCCTTCCACCCTCGCCGCCCCTCTGCGGCCTTCTAGGCCCAAGGTCTCGCATCCTAAAGGCCACAAAAAGATGGGCCTCGCCGTCCCGTGTAAATTGAAGGAGACGACGCAGCGGTAGAGGGCCCCGTGTCGGCGTTGTTGCGTCGGGTCCAGTCGTCTCAGAGGAGTCAGAGGCGTGGACAAAATGTTTGTTGCGGTGTTTGTGTTCCATTGGTCGTTGATCTTAGCTTGATGATCTGTGATTCGCGCCTTGCTCGTCTAGGTTTCTCTTGGGCCGACGCATGATCTTTTTTCCCCCGTGTCGGACCTTATTGGGCCTTTTGAGATCGACGGGCCCCCTCCTTGTTTCGCATGTGGACATGTTATTTCGTCCTTTTGGGCCAACAATTCAGCACGGTGGCCAACGGTGCGTAGTTCGTCGCCGTTTTCTTTCAAAAAAAA]
[+] EMBL AF145727 [GCCTTTGCCCCGCCTTCCCTGCCCTTTTCTCTTGCTGAGCCGCTTCTGCATTGGCTTGTGATGATGGGGGCCACTTCTCCGTCAGGCCTGGAGCTCACCATGGCTGTCCCCGGCCTCAGCTCCTCTGGTTCAGAAGGGGCCGGTTGCAACAACAACAACGCCGGTGGCGGCTGCAACATGAGGGACCTGGACATCAACCAGCCGGCGAGCGGCGGCGAGGAGGAGGAGTTCCCGATGGGCAGCGTGGAGGAGGACGAGGAGGAGAGGGGCGTCGGTGGGCCCCACCGCCCCAAGAAGCTCCGCCTCTCCAAGGAGCAGTCCCGCCTCCTCGAGGAGAGCTTCCGCCTCAACCATACCCTCACGCCGAAGCAAAAGGAGGCCTTGGCGATCAAACTGAAGCTGCGGCCGAGGCAGGTGGAGGTCTGGTTTCAGAACCGTAGGGCAAGGACGAAGCTGAAGCAGACGGAGATGGAGTGCGAGTACCTGAAGCGCTGCTTCGGGTCGCTGACGGAGGAGAACCGCCGGCTGCAGCGGGAGGTGGAGGAGCTGCGGGCGATGCGGGTGGCCCCGCCCACGGTGCTCTCGCCGCACACCAGGCAGCCGCTCCCGGCGTCCGCGCTCACCATGTGCCCCCGCTGCGAGCGCATCACCGCCGCCACCGGCCCGCCTGCCGTGCGCCCGCCGCCGTCGTCAGCCGCCGCCGCCGCCCCCTCGCCCTTCCACCCTCGCCGCCCCTCTGCGGCCTTCTAGGCCCAAGGTCTCGCATCCTAAAGGCCACAAAAAGATGGGCCTCGCCGTCCCGTGTAAATTGAAGGAGACGACGCAGCGGTAGAGGGCCCCGTGTCGGCGTTGTTGCGTCGGGTCCAGTCGTCTCAGAGGAGTCAGAGGCGTGGACAAAATGTTTGTTGCGGTGTTTGTGTTCCATTGGTCGTTGATCTTAGCTTGATGATCTGTGATTCGCGCCTTGCTCGTCTAGGTTTCTCTTGGGCCGACGCATGATCTTTTTTCCCCCGTGTCGGACCTTATTGGGCCTTTTGAGATCGACGGGCCCCCTCCTTGTTTCGCATGTGGACATGTTATTTCGTCCTTTTGGGCCAACAATTCAGCACGGTGGCCAACGGTGCGTAGTTCGTCGCCGTTTTCTTTCAAAAAAAA]
consensusID : consensus_6067#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 645 fasta sequence
[TNTCTTGCTGAGCCGCTTCTGCATTGGCTTGTNATGATGGGGGCCACTTCTCCGTCAGGCCTGGAGCTCACC-ATGGC-TGTCCCCGGCCTCAGCTCCTCTGGTTCAGAAGGGGCCGGTTGCAACAACAACAACGCCGGTGGCGGCTGCAACATGAGGGACCTGGACATCAACCAGCCGGCGAGCGGCGGCGAGGAGGAGGAGTTCCCGATGGGCAGCGTGGAGGAGGACGAGGAGGAGAGGGGCGTCGGTGGGCCCCACCGCCCCAAGAAGCTCCGCCTCTCCAAGGAGCAGTCCCGCCTCCTCGAGGAGAGCTTNCGCCTCAACCATACCCTCACGCCGAAGCAAAAGGAGGCCTTGGCGATCAAAACTTGAAGCTTGCGGNCNAAGGCAAGGTGGGAGGTCTGGTTTTAAGAACCGTAGGGCAAAGGTAAAAAATCCCCCATCTTGATGCAATATATAGAGTACCCAATAATAAGTTCACAAGCTTCTTTATTTATCATTTCAGTAGAATCTACTCCTCAGTCCTCGTTACACTATCATATACTAGAGTATTTTCTCCGCTATAAATAGCTATGTTCTGTACATACCAAGGCAAAGACTTGTACACGAGAATGTGACGAAGAAGCATACTTGATCCTATAAAAA]
[+] EMBL C73285 [TNTCTTGCTGAGCCGCTTCTGCATTGGCTTGTNATGATGGGGGCCACTTCTCCGTCAGGCCTGGAGCTCACC ATGGC TGTCCCCGGCCTCAGCTCCTCTGGTTCAGAAGGGGCCGGTTGCAACAACAACAACGCCGGTGGCGGCTGCAACATGAGGGACCTGGACATCAACCAGCCGGCGAGCGGCGGCGAGGAGGAGGAGTTCCCGATGGGCAGCGTGGAGGAGGACGAGGAGGAGAGGGGCGTCGGTGGGCCCCACCGCCCCAAGAAGCTCCGCCTCTCCAAGGAGCAGTCCCGCCTCCTCGAGGAGAGCTTNCGCCTCAACCATACCCTCACGCCGAAGCAAAAGGAGGCCTTGGCGATCAAAACTTGAAGCTTGCGGNCNAAGGCAAGGTGGGAGGTCTGGTTTTAAGAACCGTAGGGCAAAGGTAAAAAATCCCCC ]
[+] EMBL AU094212 [ CTGCATTGGCTTGTGATGAT GGGGCCA TTCTCCGTCAGGCCTGAAGCTCACCAATGGCTTGTCCCCGGCNTCAGCTCCTCTGGTTCAGAAGGGGCCGGTTGCAACAACANCAACGCCGGTGGCGGCTGCAACATGAGGGACCTGGACATCAACCAGCCGGCGAGCGGCGGCGAGGAGGAGGAGTTCCCGATGGGCAGCGTGGAGGAGGACGAGGAGGAGAGGGGCGTCGGTGGGCCCCACCGCCCCAAGAAGCTCCGCCTCTCCAAGGAGCAGTCCCGCCTCCTCGAGGAGAGCTTCCGCCTCAACCATACCCTCACGCCGAAGCAAAAGGAGGCCTTGGCGATC AAAC TGAAGC TGCGG CCGAGGC AGGT GGAGGTCTGG TTTCAGAACCGTAGGGC AAGGTAAAAAATCCCCCATCTTGATGCAATATATAGAGTACCCAATAATAAGTTCACAAGCTTCTTTATTTATCATTTCAGTAGAATCTACTCCTCAGTCCTCGTTACACTATCATATACTAGAGTATTTTCTCCGCTATAAATAGCTATGTTCTGTACATACCAAGGCAAAGACTTGTACACGAGAATGTGACGAAGAAGCATACTTGATCCTATAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6067#0 GCCTTTGCCCCGCCTTCCCTGCCCTTTTCTCTTGCTGAGCCGCTTCTGCATTGGCTTGTG 60
consensus_6067#1 ---------------------------TNTCTTGCTGAGCCGCTTCTGCATTGGCTTGTN 33
* ******************************
consensus_6067#0 ATGATGGGGGCCACTTCTCCGTCAGGCCTGGAGCTCACCATGGCTGTCCCCGGCCTCAGC 120
consensus_6067#1 ATGATGGGGGCCACTTCTCCGTCAGGCCTGGAGCTCACCATGGCTGTCCCCGGCCTCAGC 93
************************************************************
consensus_6067#0 TCCTCTGGTTCAGAAGGGGCCGGTTGCAACAACAACAACGCCGGTGGCGGCTGCAACATG 180
consensus_6067#1 TCCTCTGGTTCAGAAGGGGCCGGTTGCAACAACAACAACGCCGGTGGCGGCTGCAACATG 153
************************************************************
consensus_6067#0 AGGGACCTGGACATCAACCAGCCGGCGAGCGGCGGCGAGGAGGAGGAGTTCCCGATGGGC 240
consensus_6067#1 AGGGACCTGGACATCAACCAGCCGGCGAGCGGCGGCGAGGAGGAGGAGTTCCCGATGGGC 213
************************************************************
consensus_6067#0 AGCGTGGAGGAGGACGAGGAGGAGAGGGGCGTCGGTGGGCCCCACCGCCCCAAGAAGCTC 300
consensus_6067#1 AGCGTGGAGGAGGACGAGGAGGAGAGGGGCGTCGGTGGGCCCCACCGCCCCAAGAAGCTC 273
************************************************************
consensus_6067#0 CGCCTCTCCAAGGAGCAGTCCCGCCTCCTCGAGGAGAGCTTCCGCCTCAACCATACCCTC 360
consensus_6067#1 CGCCTCTCCAAGGAGCAGTCCCGCCTCCTCGAGGAGAGCTTNCGCCTCAACCATACCCTC 333
***************************************** ******************
consensus_6067#0 ACGCCGAAGCAAAAGGAGGCCTTGGCGATCAAA--CTGAAGCT-GCGGCCGA-GGCAGGT 416
consensus_6067#1 ACGCCGAAGCAAAAGGAGGCCTTGGCGATCAAAACTTGAAGCTTGCGGNCNAAGGCAAGG 393
********************************* ******* **** * * **** *
consensus_6067#0 --GGAGGTCTGGTTTCA-GAACCGTAGGGCAAGGACGAAGCTGAAGCAGACGGAGATGGA 473
consensus_6067#1 TGGGAGGTCTGGTTTTAAGAACCGTAGGGCAAAGGTAAAA-------------------A 434
************* * ************** * ** *
consensus_6067#0 GTGCGAGTACCTGAAGCGCTGCTTCGGGTCGCTGACGGAGGAGAACCGCCGGCTGCAGCG 533
consensus_6067#1 ATCCCCCATCTTGATGCAATATATAGAGTACCCAAT--AATAAGTTCACAAGCTTCTTTA 492
* * * *** ** * * * ** * * * * * * *** *
consensus_6067#0 GGAGGTGGAGGAGCTGCGGGCGATGCGGGTGGCCCCGCCCACGGTGCTCTCGCCGCACAC 593
consensus_6067#1 TTTATCA------TTTCAGTAGAATCTACTC-CTCAGTCCTCGTTACACT-ATCATATAC 544
* * * ** * * * * * ** ** * * ** * * **
consensus_6067#0 CAGGCAGCCGCTCCCGGCGTCCGCGCTCACCATGTGCCCCCGCTGCGAGCGCATCACCGC 653
consensus_6067#1 TAGAGTATTTTCTCCGCTATAAATAGCTATGTTCTGTACATACCAAG-GCAAAGACTTGT 603
** *** * * * ** * * * ** * *
consensus_6067#0 CGCCACCGGCCCGCCTGCCGTGCGCCCGCCGCCGTCGTCAGCCGCCGCCGCCGCCCCCTC 713
consensus_6067#1 ACACGAGAATGTGACGAAGAAGCATACTTGATCCTATAAAAA------------------ 645
* * * ** * * * *
consensus_6067#0 GCCCTTCCACCCTCGCCGCCCCTCTGCGGCCTTCTAGGCCCAAGGTCTCGCATCCTAAAG 773
consensus_6067#1 ------------------------------------------------------------
consensus_6067#0 GCCACAAAAAGATGGGCCTCGCCGTCCCGTGTAAATTGAAGGAGACGACGCAGCGGTAGA 833
consensus_6067#1 ------------------------------------------------------------
consensus_6067#0 GGGCCCCGTGTCGGCGTTGTTGCGTCGGGTCCAGTCGTCTCAGAGGAGTCAGAGGCGTGG 893
consensus_6067#1 ------------------------------------------------------------
consensus_6067#0 ACAAAATGTTTGTTGCGGTGTTTGTGTTCCATTGGTCGTTGATCTTAGCTTGATGATCTG 953
consensus_6067#1 ------------------------------------------------------------
consensus_6067#0 TGATTCGCGCCTTGCTCGTCTAGGTTTCTCTTGGGCCGACGCATGATCTTTTTTCCCCCG 1013
consensus_6067#1 ------------------------------------------------------------
consensus_6067#0 TGTCGGACCTTATTGGGCCTTTTGAGATCGACGGGCCCCCTCCTTGTTTCGCATGTGGAC 1073
consensus_6067#1 ------------------------------------------------------------
consensus_6067#0 ATGTTATTTCGTCCTTTTGGGCCAACAATTCAGCACGGTGGCCAACGGTGCGTAGTTCGT 1133
consensus_6067#1 ------------------------------------------------------------
consensus_6067#0 CGCCGTTTTCTTTCAAAAAAAA 1155
consensus_6067#1 ----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||