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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6071#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence
[CAGAATTCGGCACGAGGTTACGCCCGCCGTTAACCCTAGCTCCTTCCCCGGCGGCGGCGGGGCGGGGGGGGGCAGGAAGCCCGGAGATGCCACCGGCGTCGTCGGTTGCGTCGGCGGTGGAGAAGCTGCAGGCGGCGGCGCAGGACGCGGCGAACTCCTCGTCGCGCTCGGCGGCCGCCTTCTCCGAGCAGGCGCACCAGGTCCTCGTGCCCAGGGCCGCAGGTCGTGTTGTCTCTCTATCAACTTGTACGAAGATCAGCGCCGTCAGCTTTGCAGTCGGTGTTGTGGTGGGCTTCACATTGAAGAGAAGACACGCCGCGGGGCTGCTTGGCTGCTGAAAAGAATTAAGGGCCATGACTAGTGAAATCTTTTCATGCCATGTTGTTTTCAAGTTCTTGTTGAGTGGTTGAGACTATGCTTGGGTTGTGCTTAGCCCGCAAAATATGGATACCCTTTTTACCACTTAGGATAAAAAACCGCAAGTCAGAACCAAAACTTATGGTGTTCCTTAAGCTTGTCATTACCCCACATATTTTTTGAACGGCTCCGCTAGAGCCCTTAAAAATGTCTATCTCACAATTGTTGCGTTCTTTCGATCGGGGCTGATTACACAC]
[+] EMBL CA756505 [CAGAATTCGGCACGAGGTTACGCCCGCCGTTAACCCTAGCTCCTTCCCCGGCGGCGGCGGGGCGGGGGGGGGCAGGAAGCCCGGAGATGCCACCGGCGTCGTCGGTTGCGTCGGCGGTGGAGAAGCTGCAGGCGGCGGCGCAGGACGCGGCGAACTCCTCGTCGCGCTCGGCGGCCGCCTTCTCCGAGCAGGCGCACCAGGTCCTCGTGCCCAGGGCCGCAGGTCGTGTTGTCTCTCTATCAACTTGTACGAAGATCAGCGCCGTCAGCTTTGCAGTCGGTGTTGTGGTGGGCTTCACATTGAAGAGAAGACACGCCGCGGGGCTGCTTGGCTGCTGAAAAGAATTAAGGGCCATGACTAGTGAAATCTTTTCATGCCATGTTGTTTTCAAGTTCTTGTTGAGTGGTTGAGACTATGCTTGGGTTGTGCTTAGCCCGCAAAATATGGATACCCTTTTTACCACTTAGGATAAAAAACCGCAAGTCAGAACCAAAACTTATGGTGTTCCTTAAGCTTGTCATTACCCCACATATTTTTTGAACGGCTCCGCTAGAGCCCTTAAAAATGTCTATCTCACAATTGTTGCGTTCTTTCGATCGGGGCTGATTACACAC]
consensusID : consensus_6071#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 585 fasta sequence
[AAGTTACGCCCGCCGTTAAACCCTAGCTCCTTCCCCGGCGGCGGCGGCGGCGGGAGGGGGCAGGAAGCCCGGAGATGCCACCGGCGTCGTCGGTTGCGTCGGCGGTGGAGAAGCTGCAGGCGGCGGCGCAGGACGCGGCGAACTCCTCGTCGCGCTCGGCGGCCGCCTTCTCCGAGCAGGCGCACCAGGTCCTCGTGCCCAGGGCCGCAGGTCGTGTTGTCTCTCTATCAACTTGTACGAAGATCAGCGCCGTCAGCTTTGCAGTCGGTGTTGTGGTGGGCTTCACATTGAAGAGAAGACTACGCCGGTGGGCTGCTAGGCTGCTGAAAAGAATTAAGGACGATGACTAGTGAAATCTTTTCATGCCATGTTGTTCTCAAGTTCTGTTGAGTGTTGAGAACTATGTTTGGTTGTGCATCGCCCGCAAATTGGAATCCTTTTTACAGTTAGATAAAATCGCAAGCAAGACAAACTTATGGTTTCTAAGCTGTATTACACATATTTTGTAGGTCCGTAAGCCTTAGAATTGCTACTCAGAATGTTTGTTTTCTGATGGGTGATTTACAAATTCTATTTATCCCCCTT]
[+] EMBL AK063058 [AAGTTACGCCCGCCGTTAAACCCTAGCTCCTTCCCCGGCGGCGGCGGCGGCGGGAGGGGGCAGGAAGCCCGGAGATGCCACCGGCGTCGTCGGTTGCGTCGGCGGTGGAGAAGCTGCAGGCGGCGGCGCAGGACGCGGCGAACTCCTCGTCGCGCTCGGCGGCCGCCTTCTCCGAGCAGGCGCACCAGGTCCTCGTGCCCAGGGCCGCAGGTCGTGTTGTCTCTCTATCAACTTGTACGAAGATCAGCGCCGTCAGCTTTGCAGTCGGTGTTGTGGTGGGCTTCACATTGAAGAGAAGACTACGCCGGTGGGCTGCTAGGCTGCTGAAAAGAATTAAGGACGATGACTAGTGAAATCTTTTCATGCCATGTTGTTCTCAAGTTCTGTTGAGTGTTGAGAACTATGTTTGGTTGTGCATCGCCCGCAAATTGGAATCCTTTTTACAGTTAGATAAAATCGCAAGCAAGACAAACTTATGGTTTCTAAGCTGTATTACACATATTTTGTAGGTCCGTAAGCCTTAGAATTGCTACTCAGAATGTTTGTTTTCTGATGGGTGATTTACAAATTCTATTTATCCCCCTT]
[-] EMBL AU225715 [ TTGCGTCGGCGGTGGAGAAGCTTCAGGCGGCGGCGCAGAACGCGGCGAACTCCTCGTCGCGCTCGGCGGCCGCCTTCTCCGAGCAGGCGCACCAGGTCCTCGTGCCCAGGGCCGCAGGTCGTGTTGTCTCTCTATCAACTTGTACGAAGATCAGCGCCGTCAGCTTTGCAGTCGGTGTTGTGGTGGGCTTCACATTGAAGAGAAGACTACGCCGGTGGGCTGCTAGGCTGCTGAAAAGAATTAAGGACGATGACTAGTGAAATCTTTTCATGCCATGTTGTTCTCAAGTTCTGTTGAGTGTTGAGAACTATGTTTGGTTGTGCATCGCCCGCAAATTGGAATCCTTTTTACAGTTAGATAAAATCGCAAGCAAGACAAACTTATGGTTTCTAAGCTGTATTACACATATTTTGTAGGTCCGTAAGCCTTAGAATTGCTACTCAGAATGTTTGTTTTCTGATGGGTagcggc ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6071#0 CAGAATTCGGCACGAGGTTACGCCCGCCGTTAA-CCCTAGCTCCTTCCCCGGCGGCGGCG 59
consensus_6071#1 --------------AAGTTACGCCCGCCGTTAAACCCTAGCTCCTTCCCCGGCGGCGGCG 46
* ***************** **************************
consensus_6071#0 G-GGCGGGGGGGGGCAGGAAGCCCGGAGATGCCACCGGCGTCGTCGGTTGCGTCGGCGGT 118
consensus_6071#1 GCGGCGGGAGGGGGCAGGAAGCCCGGAGATGCCACCGGCGTCGTCGGTTGCGTCGGCGGT 106
* ****** ***************************************************
consensus_6071#0 GGAGAAGCTGCAGGCGGCGGCGCAGGACGCGGCGAACTCCTCGTCGCGCTCGGCGGCCGC 178
consensus_6071#1 GGAGAAGCTGCAGGCGGCGGCGCAGGACGCGGCGAACTCCTCGTCGCGCTCGGCGGCCGC 166
************************************************************
consensus_6071#0 CTTCTCCGAGCAGGCGCACCAGGTCCTCGTGCCCAGGGCCGCAGGTCGTGTTGTCTCTCT 238
consensus_6071#1 CTTCTCCGAGCAGGCGCACCAGGTCCTCGTGCCCAGGGCCGCAGGTCGTGTTGTCTCTCT 226
************************************************************
consensus_6071#0 ATCAACTTGTACGAAGATCAGCGCCGTCAGCTTTGCAGTCGGTGTTGTGGTGGGCTTCAC 298
consensus_6071#1 ATCAACTTGTACGAAGATCAGCGCCGTCAGCTTTGCAGTCGGTGTTGTGGTGGGCTTCAC 286
************************************************************
consensus_6071#0 ATTGAAGAGAAGAC-ACGCCGCGGGGCTGCTTGGCTGCTGAAAAGAATTAAGGGCCATGA 357
consensus_6071#1 ATTGAAGAGAAGACTACGCCGGTGGGCTGCTAGGCTGCTGAAAAGAATTAAGGACGATGA 346
************** ****** ******** ********************* * ****
consensus_6071#0 CTAGTGAAATCTTTTCATGCCATGTTGTTTTCAAGTTCTTGTTGAGTGGTTGAGACTATG 417
consensus_6071#1 CTAGTGAAATCTTTTCATGCCATGTTGTTCTCAAGTTCT-GTTGAGTGTTGAGAACTATG 405
***************************** ********* ******** * ******
consensus_6071#0 CTTGGGTTGTGCTTAGCCCGCAAAATATGGATACCCTTTTTACCACTTAGGATAAAAAAC 477
consensus_6071#1 TTTGG-TTGTGCATCGCCCGCAAA---TTGGAATCCTTTTTAC-AGTTAG---ATAAAAT 457
**** ****** * ********* * * * ********* * **** * ****
consensus_6071#0 CGCAAGTCAGAACCAAAACTTATGGTGTTCCTTAAGCTTGTCATTACCCCACATATTTTT 537
consensus_6071#1 CGCAAGCAAGAC---AAACTTATGGT---TTCTAAGCTG-----TATTACACATATTTTG 506
****** *** *********** ****** ** **********
consensus_6071#0 TGAAC-----GGCTCCGCTAGAGCCCTTAAAAATGTCTATCTCACAATTGTTGCGTTCTT 592
consensus_6071#1 TAGGTCCGTAAGCCTTAGAATTGCTACTCAGAATGTTTGTTTTCTGATGGGTGA---TTT 563
* ** * ** * * ***** * * * ** * ** **
consensus_6071#0 TCGATCGGGGCTGATTACACAC 614
consensus_6071#1 ACAAATTCTATTTATCCCCCTT 585
* * * ** * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||