cluster # 6073

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Oryza sativa
cluster # 6073 cluster # 6073 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6073#0 length = 923 sequences # 2

consensus_6073#1 length = 445 sequences # 1

consensusID : consensus_6073#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 923
fasta sequence

                              [CCGCTCCTCAGCCTCGGCGCCAAGTACGAGCCTTCACCGGCCGATGTTGCTTCGTCTTGCGATGTGACCTTCGCGATGCTTGCTGATCCGGAGAGCGCGGTTGAGGTTGCATGCGGGGCCAATGGAGCTGCACAGGGGATGGCCCCAGGGAAAGGGTATGTGGATGTGTCGACGGTTGACGCTGCTACATCCAAGCTGATTGGCAAGCACATTACAAGTACTGGGGCATCTTTCCTTGAGGCTCCAGTTTCAGGCTCAAAAAAGCCAGCAGAAGATGGGCTGCTCATCTTTCTTACCGCAGGTGATGAGTCCTTGTACAATAGAGTGGCATCCCTCCTTGATGTTATGGGCAAGTC-AAGATTTTTCCTCGGTGACGTTGGCAAAGGTGC-AGACATGAAGCTCGTTGTTAATATGGTCATGGGGAGCATGATGGTTTCGTTTTCAGAAGGACTGCTCCTGAGCGAAAAAGTTGGCCTAGACCCCAATACTCTTGTCGAGGTTATTTCACAAGGTGCTATCAGTGCTCCCATGTTCTCCCTCAAGGGCCCTTCCATGGTTAAAGCTGCATACCCTACTGCTTTTCCTCTGAAGCATCAGCAGAAGGATTTGAGGCTCGCATTGGCCCTGGCAGAATCGGTGTCCCAGTCTATTCCTACAGTCGCAGCTGCAAACGAGCTGTACAAGGTCGCGAAATCGCTTGGGCTTGCAGACCAGGACTTCTCTGCTGTAATCGAGGCGCTGAAGGCAAAGGAGCAGAGCAAGTGAAAACTGCCATTGATGCATAGGAAACAAAATGTTTGTTCAGCTGCCA-TTGATGCAGCATTGTCTATCAATGAACTGAAACCATGGCAATTCTCCCAATTTTGTTACAGAAGTAATACTTGTTTTTCAGGAATAAAAAACTGATTGATGACAAAAAAAAA]

[+] EMBL AK064876             [CCGCTCCTCAGCCTCGGCGCCAAGTACGAGCCTTCACCGGCCGATGTTGCTTCGTCTTGCGATGTGACCTTCGCGATGCTTGCTGATCCGGAGAGCGCGGTTGAGGTTGCATGCGGGGCCAATGGAGCTGCACAGGGGATGGCCCCAGGGAAAGGGTATGTGGATGTGTCGACGGTTGACGCTGCTACATCCAAGCTGATTGGCAAGCACATTACAAGTACTGGGGCATCTTTCCTTGAGGCTCCAGTTTCAGGCTCAAAAAAGCCAGCAGAAGATGGGCTGCTCATCTTTCTTACCGCAGGTGATGAGTCCTTGTACAATAGAGTGGCATCCCTCCTTGATGTTATGGGCAAGTC AAGATTTTTCCTCGGTGACGTTGGCAAAGGTGC AGACATGAAGCTCGTTGTTAATATGGTCATGGGGAGCATGATGGTTTCGTTTTCAGAAGGACTGCTCCTGAGCGAAAAAGTTGGCCTAGACCCCAATACTCTTGTCGAGGTTATTTCACAAGGTGCTATCAGTGCTCCCATGTTCTCCCTCAAGGGCCCTTCCATGGTTAAAGCTGCATACCCTACTGCTTTTCCTCTGAAGCATCAGCAGAAGGATTTGAGGCTCGCATTGGCCCTGGCAGAATCGGTGTCCCAGTCTATTCCTACAGTCGCAGCTGCAAACGAGCTGTACAAGGTCGCGAAATCGCTTGGGCTTGCAGACCAGGACTTCTCTGCTGTAATCGAGGCGCTGAAGGCAAAGGAGCAGAGCAAGTGAAAACTGCCATTGATGCATAGGAAACAAAATGTTTGTTCAGCTGCCA TTGATGCAGCATTGTCTATCAATGAACTGAAACCATGGCAATTCTCCCAATTTTGTTACAGAAGTAATACTTGTTTTTCAGGAATAAAAAACTGATTGATGACA        ]
[+] EMBL BI804197             [                                                                                                                                                                                                                                                                                                                                                             GCAAGTCAAAGA TTTTCCTC GTGACGTT GCAAA GTGCAAGACATGAAGCTCGTTGTTAATATGGTCATGGGGAGCATGATGGTTTCGTTTTCAGAAGGACTGCTCCTGAGCGAAAAAGTCGGCCTAGACCCCAATACTCTTGTCGAGGTTATTTCACAAGGTGCTATCAGTGCTCCCATGTTCTCCCTCAAGGGCCCTTCCATGGTTAAAGCTGCATACCCTACTGCTTTTCCTCTGAAGCATCAGCAGAAGGATTTGAGGCTCGCATTGGCCCTGGCAGAATCGGTGTCCCAGTCTATTCCTACAGTCGCAGCTGCAAACGAGCTGTACAAGGTCGCGAAATCGCTTGGGCTTGCAGACCAGGACTTCTCTGCTGTAATCGAGGCGCTGAAGGCAAAGGAGCAGAGCAAGTGAAAACTGCCATTGATGCATAGGAAACCAAATGTTTGTTCAGCTGCCACTTGATGCAGCATTGTCTATCAATGAACTGAAACCATGGCAATTCTCCCAATTTTGTTACAGAAGTAATACTTGTTTTTCAGGAATAAAAAACTGATTGATGACAAAAAAAAA]




>consensus_6073#0
CCGCTCCTCAGCCTCGGCGCCAAGTACGAGCCTTCACCGGCCGATGTTGCTTCGTCTTGC
GATGTGACCTTCGCGATGCTTGCTGATCCGGAGAGCGCGGTTGAGGTTGCATGCGGGGCC
AATGGAGCTGCACAGGGGATGGCCCCAGGGAAAGGGTATGTGGATGTGTCGACGGTTGAC
GCTGCTACATCCAAGCTGATTGGCAAGCACATTACAAGTACTGGGGCATCTTTCCTTGAG
GCTCCAGTTTCAGGCTCAAAAAAGCCAGCAGAAGATGGGCTGCTCATCTTTCTTACCGCA
GGTGATGAGTCCTTGTACAATAGAGTGGCATCCCTCCTTGATGTTATGGGCAAGTCAAGA
TTTTTCCTCGGTGACGTTGGCAAAGGTGCAGACATGAAGCTCGTTGTTAATATGGTCATG
GGGAGCATGATGGTTTCGTTTTCAGAAGGACTGCTCCTGAGCGAAAAAGTTGGCCTAGAC
CCCAATACTCTTGTCGAGGTTATTTCACAAGGTGCTATCAGTGCTCCCATGTTCTCCCTC
AAGGGCCCTTCCATGGTTAAAGCTGCATACCCTACTGCTTTTCCTCTGAAGCATCAGCAG
AAGGATTTGAGGCTCGCATTGGCCCTGGCAGAATCGGTGTCCCAGTCTATTCCTACAGTC
GCAGCTGCAAACGAGCTGTACAAGGTCGCGAAATCGCTTGGGCTTGCAGACCAGGACTTC
TCTGCTGTAATCGAGGCGCTGAAGGCAAAGGAGCAGAGCAAGTGAAAACTGCCATTGATG
CATAGGAAACAAAATGTTTGTTCAGCTGCCATTGATGCAGCATTGTCTATCAATGAACTG
AAACCATGGCAATTCTCCCAATTTTGTTACAGAAGTAATACTTGTTTTTCAGGAATAAAA
AACTGATTGATGACAAAAAAAAA

consensusID : consensus_6073#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 445
fasta sequence

                              [TTTATTTGTCACCAAGGTGCTTATCAGTGGCTTCCCCATGGTTTCCTCCCTCCAAGGGCCCCTTTCCATGGGTTAAACCTGCTATACCCTACTGCTTTTCCTCTGAAGCATCAGCTAGTAAGGATTTGAGGCTCGCATTGGCCCTGCCTAGAATCGGTGTCCCAAGTCTAATTCCTGACAAGTCGGCCAGCTGCCAAACGACCTGTACCAAGNTCGCGAAATCGCTTGGGGCCTTCCAGACCAGGACTTNTGTCTGTAATCGAGGCGCCTGAAGCATAAGGACAGAGCCAAGTGAAAACTCCATTGANGCATAGGAAACAAANGTTGTTCACCTCCCATTGATGCCAGCATTGTCTATCAATGAACNGAAACCATGGCAATTCTCCCAATTTGGTTACAGAAGTAATACTTNCTTNTTCAGGGAATAAAAAACTGATGATGACAA]

[+] EMBL BQ907955             [TTTATTTGTCACCAAGGTGCTTATCAGTGGCTTCCCCATGGTTTCCTCCCTCCAAGGGCCCCTTTCCATGGGTTAAACCTGCTATACCCTACTGCTTTTCCTCTGAAGCATCAGCTAGTAAGGATTTGAGGCTCGCATTGGCCCTGCCTAGAATCGGTGTCCCAAGTCTAATTCCTGACAAGTCGGCCAGCTGCCAAACGACCTGTACCAAGNTCGCGAAATCGCTTGGGGCCTTCCAGACCAGGACTTNTGTCTGTAATCGAGGCGCCTGAAGCATAAGGACAGAGCCAAGTGAAAACTCCATTGANGCATAGGAAACAAANGTTGTTCACCTCCCATTGATGCCAGCATTGTCTATCAATGAACNGAAACCATGGCAATTCTCCCAATTTGGTTACAGAAGTAATACTTNCTTNTTCAGGGAATAAAAAACTGATGATGACAA]




>consensus_6073#1
TTTATTTGTCACCAAGGTGCTTATCAGTGGCTTCCCCATGGTTTCCTCCCTCCAAGGGCC
CCTTTCCATGGGTTAAACCTGCTATACCCTACTGCTTTTCCTCTGAAGCATCAGCTAGTA
AGGATTTGAGGCTCGCATTGGCCCTGCCTAGAATCGGTGTCCCAAGTCTAATTCCTGACA
AGTCGGCCAGCTGCCAAACGACCTGTACCAAGNTCGCGAAATCGCTTGGGGCCTTCCAGA
CCAGGACTTNTGTCTGTAATCGAGGCGCCTGAAGCATAAGGACAGAGCCAAGTGAAAACT
CCATTGANGCATAGGAAACAAANGTTGTTCACCTCCCATTGATGCCAGCATTGTCTATCA
ATGAACNGAAACCATGGCAATTCTCCCAATTTGGTTACAGAAGTAATACTTNCTTNTTCA
GGGAATAAAAAACTGATGATGACAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6073#0      CCGCTCCTCAGCCTCGGCGCCAAGTACGAGCCTTCACCGGCCGATGTTGCTTCGTCTTGC 60
consensus_6073#1      ------------------------------------------------------------
                                                                                  

consensus_6073#0      GATGTGACCTTCGCGATGCTTGCTGATCCGGAGAGCGCGGTTGAGGTTGCATGCGGGGCC 120
consensus_6073#1      ------------------------------------------------------------
                                                                                  

consensus_6073#0      AATGGAGCTGCACAGGGGATGGCCCCAGGGAAAGGGTATGTGGATGTGTCGACGGTTGAC 180
consensus_6073#1      ------------------------------------------------------------
                                                                                  

consensus_6073#0      GCTGCTACATCCAAGCTGATTGGCAAGCACATTACAAGTACTGGGGCATCTTTCCTTGAG 240
consensus_6073#1      ------------------------------------------------------------
                                                                                  

consensus_6073#0      GCTCCAGTTTCAGGCTCAAAAAAGCCAGCAGAAGATGGGCTGCTCATCTTTCTTACCGCA 300
consensus_6073#1      ------------------------------------------------------------
                                                                                  

consensus_6073#0      GGTGATGAGTCCTTGTACAATAGAGTGGCATCCCTCCTTGATGTTATGGGCAAGTCAAGA 360
consensus_6073#1      ------------------------------------------------------------
                                                                                  

consensus_6073#0      TTTTTCCTCGGTGACGTTGGCAAAGGTGCAGACATGAAGCTCGTTGTTAATATGGTCATG 420
consensus_6073#1      ------------------------------------------------------------
                                                                                  

consensus_6073#0      GGGAGCATGATGGTTTCGTTTTCAGAAGGACTGCTCCTGAGCGAAAAAGTTGGCCTAGAC 480
consensus_6073#1      ------------------------------------------------------------
                                                                                  

consensus_6073#0      CCCAATACTCTTGTCGAGGTTATTTCACAAGGTGCTATCAGTGCTCCCATGTTCTCCCTC 540
consensus_6073#1      ---TTTATTTGTCACCAAGGTGCTTATCAGTGGCTTCCCCATGGTTTC----CTCCCTCC 53
                           ** *  *  * * * *  **  **  *   *  *  ** *  *       **  *

consensus_6073#0      AAGGGCCC--TTCCATGG-TTAAAGCTGC-ATACCCTACTGCTTTTCCTCTGAAGCATCA 596
consensus_6073#1      AAGGGCCCCTTTCCATGGGTTAAACCTGCTATACCCTACTGCTTTTCCTCTGAAGCATCA 113
                      ********  ******** ***** **** ******************************

consensus_6073#0      GCAG--AAGGATTTGAGGCTCGCATTGGCCCTGGC-AGAATCGGTGTCCCA-GTCTA-TT 651
consensus_6073#1      GCTAGTAAGGATTTGAGGCTCGCATTGGCCCTGCCTAGAATCGGTGTCCCAAGTCTAATT 173
                      **    *************************** * *************** ***** **

consensus_6073#0      CCTAC--AGTCG--CAGCTGC-AAACGAGCTGTAC-AAGGTCGCGAAATCGCTTGGG--C 703
consensus_6073#1      CCTGACAAGTCGGCCAGCTGCCAAACGACCTGTACCAAGNTCGCGAAATCGCTTGGGGCC 233
                      ***    *****  ******* ****** ****** *** *****************  *

consensus_6073#0      TTGCAGACCAGGACTTCTCTGCTGTAATCGAGGCGCTGAAGGCAAAGGAGCAGAGC-AAG 762
consensus_6073#1      TTCCAGACCAGGACTTNTGT-CTGTAATCGAGGCGCCTGAAGCATAAGGACAGAGCCAAG 292
                      ** ************* * * ***************   * *** * *  ****** ***

consensus_6073#0      TGAAAACTGCCATTGATGCATAGGAAACAAAATGTTTGTTCAGCTGCCATTGATGC-AGC 821
consensus_6073#1      TGAAAACT-CCATTGANGCATAGGAAACAAANG--TTGTTCACCTCCCATTGATGCCAGC 349
                      ******** ******* **************    ******* ** ********** ***

consensus_6073#0      ATTGTCTATCAATGAACTGAAACCATGGCAATTCTCCCAATTTTGTTACAGAAGTAATAC 881
consensus_6073#1      ATTGTCTATCAATGAACNGAAACCATGGCAATTCTCCCAATTTGGTTACAGAAGTAATAC 409
                      ***************** ************************* ****************

consensus_6073#0      TTGTTTTTC--AGGAATAAAAAACTGATTGATGACAAAAAAAAA 923
consensus_6073#1      TTNCTTNTTCAGGGAATAAAAAACTGAT-GATGACAA------- 445
                      **  ** *    **************** ********