cluster # 6077

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Oryza sativa
cluster # 6077 cluster # 6077 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6077#0 length = 274 sequences # 2

consensus_6077#1 length = 236 sequences # 1

consensusID : consensus_6077#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 274
fasta sequence

                              [AATAAATTGGTTTCATGCCGTGTGTCCATCATATTACATTTTTGTTGTCAAGTTATTTAATTTCGAATTCGGTGTACTTCTTGTGGAGCTTTTGATGTTGTTGGGACAAAAAACAAAAATAACCAGAGTTCAGCCCGCGTTGTTTTCGACTTCTTGAGCTGGAAAGTTCAGTTGCATAAAGAAAATTCAGGTGTACTCGGTGTGAAACTTTTGATGTTGTTTGGATATAAACAAAAACCAAAGTTCGGCCCCAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU076091             [AATAAATTGGTTTCATGCCGTGTGTCCATCATATTACATTTTTGTTGTCAAGTTATTTAATTTCGAATTCGGTGTACTTCTTGTGGAGCTTTTGATGTTGTTGGGACAAAAAACAAAAATAACCAGAGTTCAGCCCGCGTTGTTTTCGACTTCTTGAGCTGGAAAGTTCAGTTGCATAAAGAAAATTCAGGTGTACTCGGTGTGAAACTTTTGATGTTGTTTGGATATAAACAAAAACCAAAGTTCGGCCCCAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CB966840             [                                                                                  GTGGAGCTTTTGATGTTGTTGGGACAAAAAACAAAAATAACCCAAGTTCAGCCCGCGTTGTTTTCGACTTCTTGAGCTGGAAAGTTCAGTTG                                                                                                    ]




>consensus_6077#0
AATAAATTGGTTTCATGCCGTGTGTCCATCATATTACATTTTTGTTGTCAAGTTATTTAA
TTTCGAATTCGGTGTACTTCTTGTGGAGCTTTTGATGTTGTTGGGACAAAAAACAAAAAT
AACCAGAGTTCAGCCCGCGTTGTTTTCGACTTCTTGAGCTGGAAAGTTCAGTTGCATAAA
GAAAATTCAGGTGTACTCGGTGTGAAACTTTTGATGTTGTTTGGATATAAACAAAAACCA
AAGTTCGGCCCCAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_6077#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 236
fasta sequence

                              [TGAGCAGAGGTGGGGGCTGTTCATCGCGACCAAGTGATGAATCAAGATGCGCAGCGTGGGGGGGACTCGCAAATAAATTGGTTTCATGCCGTGTGTCCATCATATTACATTTTTGTTGTCAAGTTATTTAATTTCGAATTCGGTGTACTTCTTGTGGAGCTTTTGATGTTGTTGGGACAAAAAACAAAAATAACCAAAGTTCAGCCCGCGTTGTTTTCGACTTCTAAAAAAAAAAA]

[-] EMBL CA762802             [TGAGCAGAGGTGGGGGCTGTTCATCGCGACCAAGTGATGAATCAAGATGCGCAGCGTGGGGGGGACTCGCAAATAAATTGGTTTCATGCCGTGTGTCCATCATATTACATTTTTGTTGTCAAGTTATTTAATTTCGAATTCGGTGTACTTCTTGTGGAGCTTTTGATGTTGTTGGGACAAAAAACAAAAATAACCAAAGTTCAGCCCGCGTTGTTTTCGACTTCTAAAAAAAAAAA]




>consensus_6077#1
TGAGCAGAGGTGGGGGCTGTTCATCGCGACCAAGTGATGAATCAAGATGCGCAGCGTGGG
GGGGACTCGCAAATAAATTGGTTTCATGCCGTGTGTCCATCATATTACATTTTTGTTGTC
AAGTTATTTAATTTCGAATTCGGTGTACTTCTTGTGGAGCTTTTGATGTTGTTGGGACAA
AAAACAAAAATAACCAAAGTTCAGCCCGCGTTGTTTTCGACTTCTAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6077#0      ------------------------------------------------------------
consensus_6077#1      TGAGCAGAGGTGGGGGCTGTTCATCGCGACCAAGTGATGAATCAAGATGCGCAGCGTGGG 60
                                                                                  

consensus_6077#0      -----------AATAAATTGGTTTCATGCCGTGTGTCCATCATATTACATTTTTGTTGTC 49
consensus_6077#1      GGGGACTCGCAAATAAATTGGTTTCATGCCGTGTGTCCATCATATTACATTTTTGTTGTC 120
                                 *************************************************

consensus_6077#0      AAGTTATTTAATTTCGAATTCGGTGTACTTCTTGTGGAGCTTTTGATGTTGTTGGGACAA 109
consensus_6077#1      AAGTTATTTAATTTCGAATTCGGTGTACTTCTTGTGGAGCTTTTGATGTTGTTGGGACAA 180
                      ************************************************************

consensus_6077#0      AAAACAAAAATAACCAGAGTTCAGCCCGCGTTGTTTTCGACTTCTTGAGCTGGAAAGTTC 169
consensus_6077#1      AAAACAAAAATAACCAAAGTTCAGCCCGCGTTGTTTTCGACTTCTAAAAAAAAAAA---- 236
                      **************** ****************************  *     ***    

consensus_6077#0      AGTTGCATAAAGAAAATTCAGGTGTACTCGGTGTGAAACTTTTGATGTTGTTTGGATATA 229
consensus_6077#1      ------------------------------------------------------------
                                                                                  

consensus_6077#0      AACAAAAACCAAAGTTCGGCCCCAAAAAAAAAAAAAAAAAAAAAA 274
consensus_6077#1      ---------------------------------------------