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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6078#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1647 fasta sequence
[GGCACGCGCGCGTTGACGCGCCTCCTCCTTCGCCGTCCCTCCTACCTGCTCGGCCTGGCTGCTCGCGTTTTTTACTCTGAACTCGCCGACCCGATCAACCACCGCGGCGCGTGAGTCCATTCATCCCCAAATCCACCCGAGAAAGAAAGGAAGCAAAGCGAAGCGAATCCAACGATTTTTCCCATGGAGCAGCCCAAGCCGCCGTCGGTAGCCGCCTCGGCGGCGGAGGCGCAGAACCCGAACGCCTTCACCTGCGAGCTGCCGCACTCCATCTACGCGCTGGCCTTCTCCCCCTCCGCGCCCGTCCTCGCCGCCGGCAGCTTCCTCGAGGACCTCCACAACCGCGTCTCCCTCCTCTCCTTCGACCCCGTCCACCCCACCGCCGCCTCCTTCCGCGCCCTCCCCGCGCTCTCCTTCGACCACCCCTACCCGCCCACCAAGCTCCAGTTCCACCCGCGCGCCGCCTCCGCGCCCCACCTCCTCGCCTCCTCCTCCGACGCGCTGCGGCTCTGGCTTGCCCCGCTCGACGATCTCGCCGCCACCGCCACCGCCGCCGCGCCCGAGCTCCGCTCCGTCCTCGACAACCGCAAGACATCCGCCTCCGAGTTCTGCGCCCCCCTCACCTCCTTCGACTGGAACGAGGCCGAGCCCCGCCGCATCGGGACCGCCTCCATCGACACCACCTGCACCATCTGGGACATCGAGCGCGGCGTCGTCGAGACGCAGCTCATCGCGCACGACAAGGCCGTGCACGACATCGCCTGGGGGGAGAACGGCATCTTCGCCTCCGTCTCAGCCGACGGCTCCGTCCGCGTCTTCGACCTCCGGGACAAGGAGCATTCCACCATCTTCTACGAGAGCCCCCGCCCGGACACGCCGCTCCTCAGGCTGGCATGGAACCGCTATGACTTCCACTACATGGCCACCCTGCTCATGGACAGCAGCGCCGTCGTCGTGCTCGACATGCGCGCGCCCGGGGTGCCGGTGGCCGAACTACACAGACACCGGGCGTGCGCCAACGCGGTCGCTTGGGCGCCACAGGCCACGAGGCACCTTTGCTCGGCTGGGGACGACGGCCAAGCGCTGATTTGGGAGCTGCCAGCGACGCCCGGCGCAGTGCCGGCCGAGGGGATTGATCCTGTGATGGTGTATGATGCCGGTGCAGAGATAAACCAACTGCAATGGGCGGCAGCTTACCCGGAGTGGATATCGATTGCCTTTGAGAACAAGGTCCAGCTTCTCAGGGTCCGACGAGATGTTTTCTGAAGGATGTTCGACTCTGAAGCCTTGGCGTTTCTTCTATTCCATCAGTTCACATGTGTCTTATGTTGGTGATCTCTTGATATATTCATTACTCTACTCTCCTGCTAAGCTACGGAAAGCATGAAACTTGCAGCAAGGATTGATCTTGTGGCCAGCTTTAACTTGAACTTTGTGGAAGTTATCTGTGTTGTGAACATAGAAATATAGATACTAGCCTGCCAGTACAAGAATCAGCTGATGAATGGATAGATGGACTGCTCACTGCTCCTGCATTTAGTCCTGTAGTCATTTTCGTTTTTCTGCTCGTGCTGTGCTATTCATCGCGCTAACTTTCTTCATTTGCTTCTTGATAACATTATCATATGCTAATATAATATTTCCTGG]
[+] EMBL AK112090 [GGCACGCGCGCGTTGACGCGCCTCCTCCTTCGCCGTCCCTCCTACCTGCTCGGCCTGGCTGCTCGCGTTTTTTACTCTGAACTCGCCGACCCGATCAACCACCGCGGCGCGTGAGTCCATTCATCCCCAAATCCACCCGAGAAAGAAAGGAAGCAAAGCGAAGCGAATCCAACGATTTTTCCCATGGAGCAGCCCAAGCCGCCGTCGGTAGCCGCCTCGGCGGCGGAGGCGCAGAACCCGAACGCCTTCACCTGCGAGCTGCCGCACTCCATCTACGCGCTGGCCTTCTCCCCCTCCGCGCCCGTCCTCGCCGCCGGCAGCTTCCTCGAGGACCTCCACAACCGCGTCTCCCTCCTCTCCTTCGACCCCGTCCACCCCACCGCCGCCTCCTTCCGCGCCCTCCCCGCGCTCTCCTTCGACCACCCCTACCCGCCCACCAAGCTCCAGTTCCACCCGCGCGCCGCCTCCGCGCCCCACCTCCTCGCCTCCTCCTCCGACGCGCTGCGGCTCTGGCTTGCCCCGCTCGACGATCTCGCCGCCACCGCCACCGCCGCCGCGCCCGAGCTCCGCTCCGTCCTCGACAACCGCAAGACATCCGCCTCCGAGTTCTGCGCCCCCCTCACCTCCTTCGACTGGAACGAGGCCGAGCCCCGCCGCATCGGGACCGCCTCCATCGACACCACCTGCACCATCTGGGACATCGAGCGCGGCGTCGTCGAGACGCAGCTCATCGCGCACGACAAGGCCGTGCACGACATCGCCTGGGGGGAGAACGGCATCTTCGCCTCCGTCTCAGCCGACGGCTCCGTCCGCGTCTTCGACCTCCGGGACAAGGAGCATTCCACCATCTTCTACGAGAGCCCCCGCCCGGACACGCCGCTCCTCAGGCTGGCATGGAACCGCTATGACTTCCACTACATGGCCACCCTGCTCATGGACAGCAGCGCCGTCGTCGTGCTCGACATGCGCGCGCCCGGGGTGCCGGTGGCCGAACTACACAGACACCGGGCGTGCGCCAACGCGGTCGCTTGGGCGCCACAGGCCACGAGGCACCTTTGCTCGGCTGGGGACGACGGCCAAGCGCTGATTTGGGAGCTGCCAGCGACGCCCGGCGCAGTGCCGGCCGAGGGGATTGATCCTGTGATGGTGTATGATGCCGGTGCAGAGATAAACCAACTGCAATGGGCGGCAGCTTACCCGGAGTGGATATCGATTGCCTTTGAGAACAAGGTCCAGCTTCTCAGGGTCCGACGAGATGTTTTCTGAAGGATGTTCGACTCTGAAGCCTTGGCGTTTCTTCTATTCCATCAGTTCACATGTGTCTTATGTTGGTGATCTCTTGATATATTCATTACTCTACTCTCCTGCTAAGCTACGGAAAGCATGAAACTTGCAGCAAGGATTGATCTTGTGGCCAGCTTTAACTTGAACTTTGTGGAAGTTATCTGTGTTGTGAACATAGAAATATAGATACTAGCCTGCCAGTACAAGAATCAGCTGATGAATGGATAGATGGACTGCTCACTGCTCCTGCATTTAGTCCTGTAGTCATTTTCGTTTTTCTGCTCGTGCTGTGCTATTCATCGCGCTAACTTTCTTCATTTGCTTCTTGATAACATTATCATATGCTAATATAATATTTCCTGG]
[+] EMBL CB655820 [ ATTCACCCCCAAATCCACCCGAGAAAGAAAGGAAGCAAAGCGAAGCGAATCCAACGATTTTTCCCATGGAGCAGCCCAAGCCGCCGTCGGAAGCCGCCTCGGCGGGGGAGGCGCAAAACCCGAACGCCTTCACCTGCGAGCTGCCGCACTCCATCTACGCGCTGGCCTTCTCCCCCTCCGCGCCCGTCCTCGCCGCCGGCAGCTTCCTCGAGGACCTCCACAACCGCGTCTCCCTCCTCTCCTTCGACCCCGTCCACCCCACGGCCGCGTCCTTCCGCGCCCTCCCCGCGCTCTCCTTCGACCACCCCTACCCGCCCACCAAGCTCCAGTTCCAGCCGCGCGCCGCCTCCGCGCCCCACCTCCTCGCCTCCTCCTCCGACGCGCTGCGGCTCTGGCTTGCCCCGCTCGACGATCTCGCCGCCACCGCCACCGCCGCCGCGCCCGAACTCCGCTCCGTCCTCGACAACCGCAAGACATCCGCCTCCGAGTTCTGCGCCCCCCTCACCTCCTTCGACTGGAACGAGGCCAAGCCCCGCCGCATCGGGACCGCCTCCATCGACACCACCTGCACCATCTGGGACATCGAGCGCGGCGTCATCAAGACGCAGCTCATCGCGCACGACAAGGCCGTGCACGACATCGCCTGGGGGGAGAACGGCATCTTCACCTCCGTCTCAGCCGACGGCTCCGTCCGCGTCTTCc ]
consensusID : consensus_6078#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence
[CGCGGCGTCGTCGAGACGCAGCTCATCGCGCACGACAAGGCCGTGCACGACATCGCCTGGGGGGAGAACGGCATCTTCGCCTCCGTCTCAGCCGACGGCTCCGTCCGCGTCTTCGACCTCCGGGACAAGGAGCATTCCACCATCTTCTACGAGAGCCCCCGCCCGGACACGCCGCTCCTCAGGCTGGCATGGAACCGCTATGACTTCCACTACATGGCCACCCTGCTCATGGACAGCAGCGCCGTCGTCGTGCTCGACATGCGCGCGCCCGGGGTGCCGGTGGCCGAACTACACAGACACCGGGCGTGCGCCAACGCGGTCGCTTGGGCGCCACAGGCCACGAGGCACCTTTGCTCGGCTGGGGACGACGGCCAAGCGCTGATTTGGGAGCTGCCAGCGACGCCCGGCGCAGTGCCGGCCGAGGGGATTGATCCTGTGATGGTGTATGATGCCGGTGCAGAGATAAACCAACTGCAATGGGCGGCAGCTTACCCGGAGTGGATATCGATTGCCTTTGAGAACAAGGTCCAGCTTCTCAGGGTCTGACGAGGTTGGTTCCTTTGGCCCTTCATGGTTCAAATAGTCTATTGATTCATAGCATAATATTTTTAAGATTGAATAATGCTGATTCTAAACATTAGTATTAGATTTTGGGATTGTTGAATTTGATTTATCAGAAGCTTCTACA]
[-] EMBL CB655821 [CGCGGCGTCGTCGAGACGCAGCTCATCGCGCACGACAAGGCCGTGCACGACATCGCCTGGGGGGAGAACGGCATCTTCGCCTCCGTCTCAGCCGACGGCTCCGTCCGCGTCTTCGACCTCCGGGACAAGGAGCATTCCACCATCTTCTACGAGAGCCCCCGCCCGGACACGCCGCTCCTCAGGCTGGCATGGAACCGCTATGACTTCCACTACATGGCCACCCTGCTCATGGACAGCAGCGCCGTCGTCGTGCTCGACATGCGCGCGCCCGGGGTGCCGGTGGCCGAACTACACAGACACCGGGCGTGCGCCAACGCGGTCGCTTGGGCGCCACAGGCCACGAGGCACCTTTGCTCGGCTGGGGACGACGGCCAAGCGCTGATTTGGGAGCTGCCAGCGACGCCCGGCGCAGTGCCGGCCGAGGGGATTGATCCTGTGATGGTGTATGATGCCGGTGCAGAGATAAACCAACTGCAATGGGCGGCAGCTTACCCGGAGTGGATATCGATTGCCTTTGAGAACAAGGTCCAGCTTCTCAGGGTCTGACGAGGTTGGTTCCTTTGGCCCTTCATGGTTCAAATAGTCTATTGATTCATAGCATAATATTTTTAAGATTGAATAATGCTGATTCTAAACATTAGTATTAGATTTTGGGATTGTTGAATTTGATTTATCAGAAGCTTCTACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6078#0 GGCACGCGCGCGTTGACGCGCCTCCTCCTTCGCCGTCCCTCCTACCTGCTCGGCCTGGCT 60
consensus_6078#1 ------------------------------------------------------------
consensus_6078#0 GCTCGCGTTTTTTACTCTGAACTCGCCGACCCGATCAACCACCGCGGCGCGTGAGTCCAT 120
consensus_6078#1 ------------------------------------------------------------
consensus_6078#0 TCATCCCCAAATCCACCCGAGAAAGAAAGGAAGCAAAGCGAAGCGAATCCAACGATTTTT 180
consensus_6078#1 ------------------------------------------------------------
consensus_6078#0 CCCATGGAGCAGCCCAAGCCGCCGTCGGTAGCCGCCTCGGCGGCGGAGGCGCAGAACCCG 240
consensus_6078#1 ------------------------------------------------------------
consensus_6078#0 AACGCCTTCACCTGCGAGCTGCCGCACTCCATCTACGCGCTGGCCTTCTCCCCCTCCGCG 300
consensus_6078#1 ------------------------------------------------------------
consensus_6078#0 CCCGTCCTCGCCGCCGGCAGCTTCCTCGAGGACCTCCACAACCGCGTCTCCCTCCTCTCC 360
consensus_6078#1 ------------------------------------------------------------
consensus_6078#0 TTCGACCCCGTCCACCCCACCGCCGCCTCCTTCCGCGCCCTCCCCGCGCTCTCCTTCGAC 420
consensus_6078#1 ------------------------------------------------------------
consensus_6078#0 CACCCCTACCCGCCCACCAAGCTCCAGTTCCACCCGCGCGCCGCCTCCGCGCCCCACCTC 480
consensus_6078#1 ------------------------------------------------------------
consensus_6078#0 CTCGCCTCCTCCTCCGACGCGCTGCGGCTCTGGCTTGCCCCGCTCGACGATCTCGCCGCC 540
consensus_6078#1 ------------------------------------------------------------
consensus_6078#0 ACCGCCACCGCCGCCGCGCCCGAGCTCCGCTCCGTCCTCGACAACCGCAAGACATCCGCC 600
consensus_6078#1 ------------------------------------------------------------
consensus_6078#0 TCCGAGTTCTGCGCCCCCCTCACCTCCTTCGACTGGAACGAGGCCGAGCCCCGCCGCATC 660
consensus_6078#1 ------------------------------------------------------------
consensus_6078#0 GGGACCGCCTCCATCGACACCACCTGCACCATCTGGGACATCGAGCGCGGCGTCGTCGAG 720
consensus_6078#1 ---------------------------------------------CGCGGCGTCGTCGAG 15
***************
consensus_6078#0 ACGCAGCTCATCGCGCACGACAAGGCCGTGCACGACATCGCCTGGGGGGAGAACGGCATC 780
consensus_6078#1 ACGCAGCTCATCGCGCACGACAAGGCCGTGCACGACATCGCCTGGGGGGAGAACGGCATC 75
************************************************************
consensus_6078#0 TTCGCCTCCGTCTCAGCCGACGGCTCCGTCCGCGTCTTCGACCTCCGGGACAAGGAGCAT 840
consensus_6078#1 TTCGCCTCCGTCTCAGCCGACGGCTCCGTCCGCGTCTTCGACCTCCGGGACAAGGAGCAT 135
************************************************************
consensus_6078#0 TCCACCATCTTCTACGAGAGCCCCCGCCCGGACACGCCGCTCCTCAGGCTGGCATGGAAC 900
consensus_6078#1 TCCACCATCTTCTACGAGAGCCCCCGCCCGGACACGCCGCTCCTCAGGCTGGCATGGAAC 195
************************************************************
consensus_6078#0 CGCTATGACTTCCACTACATGGCCACCCTGCTCATGGACAGCAGCGCCGTCGTCGTGCTC 960
consensus_6078#1 CGCTATGACTTCCACTACATGGCCACCCTGCTCATGGACAGCAGCGCCGTCGTCGTGCTC 255
************************************************************
consensus_6078#0 GACATGCGCGCGCCCGGGGTGCCGGTGGCCGAACTACACAGACACCGGGCGTGCGCCAAC 1020
consensus_6078#1 GACATGCGCGCGCCCGGGGTGCCGGTGGCCGAACTACACAGACACCGGGCGTGCGCCAAC 315
************************************************************
consensus_6078#0 GCGGTCGCTTGGGCGCCACAGGCCACGAGGCACCTTTGCTCGGCTGGGGACGACGGCCAA 1080
consensus_6078#1 GCGGTCGCTTGGGCGCCACAGGCCACGAGGCACCTTTGCTCGGCTGGGGACGACGGCCAA 375
************************************************************
consensus_6078#0 GCGCTGATTTGGGAGCTGCCAGCGACGCCCGGCGCAGTGCCGGCCGAGGGGATTGATCCT 1140
consensus_6078#1 GCGCTGATTTGGGAGCTGCCAGCGACGCCCGGCGCAGTGCCGGCCGAGGGGATTGATCCT 435
************************************************************
consensus_6078#0 GTGATGGTGTATGATGCCGGTGCAGAGATAAACCAACTGCAATGGGCGGCAGCTTACCCG 1200
consensus_6078#1 GTGATGGTGTATGATGCCGGTGCAGAGATAAACCAACTGCAATGGGCGGCAGCTTACCCG 495
************************************************************
consensus_6078#0 GAGTGGATATCGATTGCCTTTGAGAACAAGGTCCAGCTTCTCAGGGTCCGACGAGATGTT 1260
consensus_6078#1 GAGTGGATATCGATTGCCTTTGAGAACAAGGTCCAGCTTCTCAGGGTCTGACGAGGTTGG 555
************************************************ ****** *
consensus_6078#0 TTCTGAAGGATGTTCGACTCTGAAGCCTTGGCGTTTCTTCTATTCCATCAGTTCACATGT 1320
consensus_6078#1 TTCC--------TTTGGC-------CCTTCATGGTTCAAATAGTCTATTGATTCATA-GC 599
*** ** * * **** * *** ** ** ** **** * *
consensus_6078#0 GTCTTATGTTGGTGATCTCTTGATATATTCATTACTCTACTCTCCTGCTAAGCTACGGAA 1380
consensus_6078#1 ATAATATTTTTAAGATTGAATAATG--CTGATT-CTAAACATTAGTATTAGATTTTGGGA 656
* *** ** *** * ** * *** ** ** * * ** * ** *
consensus_6078#0 AGCATGAAACTTGCAGCAAGGATTGATCTTGTGGCCAGCTTTAACTTGAACTTTGTGGAA 1440
consensus_6078#1 T-TGTTGAATTTGATTTATCAGAAGCTTCTACA--------------------------- 688
* ** *** * * * *
consensus_6078#0 GTTATCTGTGTTGTGAACATAGAAATATAGATACTAGCCTGCCAGTACAAGAATCAGCTG 1500
consensus_6078#1 ------------------------------------------------------------
consensus_6078#0 ATGAATGGATAGATGGACTGCTCACTGCTCCTGCATTTAGTCCTGTAGTCATTTTCGTTT 1560
consensus_6078#1 ------------------------------------------------------------
consensus_6078#0 TTCTGCTCGTGCTGTGCTATTCATCGCGCTAACTTTCTTCATTTGCTTCTTGATAACATT 1620
consensus_6078#1 ------------------------------------------------------------
consensus_6078#0 ATCATATGCTAATATAATATTTCCTGG 1647
consensus_6078#1 ---------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||