These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6107#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1366 fasta sequence [CATGTCGCCGCCTCCCTCCTCCCTCCTCCCCTCCCCGCTCCCATCTCCGCCCATCCTCCTCTCCACCAACCCCTCCTCCCTGCGCCTCCCGCCGCTCGCCGCCGGGAGGCGCGGGGCCGAGCGGGCCGTGGCTGCGGCGGCGGCGTCCGCGCCCGCGCCCGCGACGCCCGTGCAGGCGCAGCAGCGGGCGTCCCGGCCGTCGGCGGCCGAGGTGGCGCGGACGGTGGTGGAGCTTGCGCCGTCGGGGACGCTCTCCGTGGTCGGCCCCGACGGCTGGCCGCTCGGCGTCGGCGCCCGCTTCGTCGCCGACGGCTCCGGCGCGCCCGCTCTGTGCCTCGCCGCCTCCGGGCCCGCCGCCGCCGCGCCCGATGCGCCGTCCAGCTTCCACGTCGAGTTTCGTCAGAGTGGGGCCAGGACACCTCAATGTACTTTGCTTGGTGCTTTGACTAAACCTAACGATGAATATGAATTAAAGAAGCTTTCTACTAGGTGGCAAAAGAAATTTGGCGAGGAGATAGATCAAGATCTTTTGTATTTGATATCAGTAGACAGAATCTTGCACATTGAAGATTTCAATGAGGATGGCATGTGGGTAATTCCATCAGAATACAGTGATGCAGAACCTGACCCTCTTCGAAATTTTGCGGAAAGCATTGTTGAGGAAATGAACAGCAAACATGCTGAAGATGTACATAGGATATACAGTATTTATGTTGAATCAGATTTCCAGGCGACAGAGGTGAAGATGATTTGGGTAGACAGGTTGGGTTTTGACTTGCATGTTCA-TTCCGGGGAAAGTACCTTTGCTGCCCGGATCCCTTTCACGAGAGAGGTCTCTGATGAGAAGGGAGTGAAATCATCATTCAACATGATGTCTCATCATGCGTGGGAAGTAGAGAAGAGTTATGCGGCCCCAGAGTTTGAGAAGGTAGAGCTCTTGAAGAAAGTCAGATAGGTACTGTGATTTCTATGGTGCCGCCTTACCCTGCATCCGTTGTCAGTATTTTGTCATTCATACGAGTATAGCGCAACTTTTGTCGCATTAAATGTATTGTGTGTACCTCCATTTTTTGCCATATGTGCTATAGGTTAGTCGTTCTTTTGTGGAGAGCTATGAATCTAGACTGTAAGGTTGGAACTTTAGCTGTGGCTTCTTCATGAGATGAGATTGAGATAATTAAATCATGTTTATACGATCTTCAGTTGTAACATGCAACGTTCTACGTAGTCAGAATTGCAGTGGAGTACTGGCTTTATGCCCCAAGTATAGAGCACTTTTGATGTAACTAGGAAGATAGCCCGCGCACATGCGCGGGCATCTTATCTGATGTTGTTTTAAATTGTGTTAAGAATGTTTTATGTGGGT] [+] EMBL AK120666 [CATGTCGCCGCCTCCCTCCTCCCTCCTCCCCTCCCCGCTCCCATCTCCGCCCATCCTCCTCTCCACCAACCCCTCCTCCCTGCGCCTCCCGCCGCTCGCCGCCGGGAGGCGCGGGGCCGAGCGGGCCGTGGCTGCGGCGGCGGCGTCCGCGCCCGCGCCCGCGACGCCCGTGCAGGCGCAGCAGCGGGCGTCCCGGCCGTCGGCGGCCGAGGTGGCGCGGACGGTGGTGGAGCTTGCGCCGTCGGGGACGCTCTCCGTGGTCGGCCCCGACGGCTGGCCGCTCGGCGTCGGCGCCCGCTTCGTCGCCGACGGCTCCGGCGCGCCCGCTCTGTGCCTCGCCGCCTCCGGGCCCGCCGCCGCCGCGCCCGATGCGCCGTCCAGCTTCCACGTCGAGTTTCGTCAGAGTGGGGCCAGGACACCTCAATGTACTTTGCTTGGTGCTTTGACTAAACCTAACGATGAATATGAATTAAAGAAGCTTTCTACTAGGTGGCAAAAGAAATTTGGCGAGGAGATAGATCAAGATCTTTTGTATTTGATATCAGTAGACAGAATCTTGCACATTGAAGATTTCAATGAGGATGGCATGTGGGTAATTCCATCAGAATACAGTGATGCAGAACCTGACCCTCTTCGAAATTTTGCGGAAAGCATTGTTGAGGAAATGAACAGCAAACATGCTGAAGATGTACATAGGATATACAGTATTTATGTTGAATCAGATTTCCAGGCGACAGAGGTGAAGATGATTTGGGTAGACAGGTTGGGTTTTGACTTGCATGTTCA TTCCGGGGAAAGTACCTTTGCTGCCCGGATCCCTTTCACGAGAGAGGTCTCTGATGAGAAGGGAGTGAAATCATCATTCAACATGATGTCTCATCATGCGTGGGAAGTAGAGAAGAGTTATGCGGCCCCAGAGTTTGAGAAGGTAGAGCTCTTGAAGAAAGTCAGATAGGTACTGTGATTTCTATGGTGCCGCCTTACCCTGCATCCGTTGTCAGTATTTTGTCATTCATACGAGTATAGCGCAACTTTTGTCGCATTAAATGTATTGTGTGTACCTCCATTTTTTGCCATATGTGCTATAGGTTAGTCGTTCTTTTGTGGAGAGCTATGAATCTAGACTGTAAGGTTGGAACTTTAGCTGTGGCTTCTTCATGAGATGAGATTGAGATAATTAAATCATGTTTATACGATCTTCAGTTGTAACATGCAACGTTCTACGTAGTCAGAATTGCAGTGGAGTACTGGCTTTATGCCCCAAGTATAGAGCACTTTTGATGTAACTAGGAAGATAGCCCGCGCACATGCGCGGGCATCTTATCTGATGTTGTTTTAAATTGTGTTAAGAATGTTTTATGTGGGT] [+] EMBL BI805152 [ AGATGTACATAGGATATAC GTATTTATGTTGAATCAGATTT CAGGCGACAGAGGTGAAGATGATTTGGGTAGACACGTT GGTTTTGACTTGCATGTTCACTTCCGGGGAAGGTACCTTTGCTGCCCGGATCCCTTTCACGAGAGAGGTCTCTGATGAGAAGGGAGTGAAATCATCATTCAACATGATGTCTCATCATGCGTGGGAAGTAGAGAAGAGTTATGCGGCCCCAGAGTTTGAGAAGGTAGAGCTCTTGAAGAAAGTCAGATAGGTACTGTGATTTCTATGGTGCCGCCTTACCCTGCATCCGTTGTCAGTATTTTGTCATTCATACGAGTATAGCGCAACTTTTGCTGCATTAAATGTATTGTGTGTACCTCCATTTTTTGCCATATGTGCTATAGGTTAGTCGTTCTTTTGTGGAGAGCTATGAATCTAGACTGTAAGGTTGGAACTTTAGCTGTGGCTTCTTCATGAGATGAGATTGAGATAAAAAAAaa ] [+] EMBL AK058255 [ CTTGAAGAAAGTCAGATAGGTACTGTGATTTCTATGGTGCCGCCTTACCCTGCATCCGTTGTCAGTATTTTGTCATTCATACGAGTATAGCGCAACTTTTGTCGCATTAAATGTATTGTGTGTACCTCCATTTTTTGCCATATGTGCTATAGGTTAGTCGTTCTTTTGTGGAGAGCTATGAATCTAGACTGTAAGGTTGGAACTTTAGCTGTGGCTTCTTCATGAGATGAGATTGAGATAATTAAATCATGTTTATACGATCTTCAGTTGTAACATGCAACGTTCTACGTAGTCAGAATTGCAGTGGAGTACTGGCTTTA ] consensusID : consensus_6107#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence [CTGCATATTCATTCCGGGGAAGGTACCTNTGCTGCCCGGATCCCTTTCACGAGAGAGGTCTTTGATGAGAAGGGAGTGAAATCATCATTCAACATGATGTCTCATCATGCGTGGGAAGTAGAGAAGAGTTATGCGGCCCCAGAGTTTGAGAAGGTAGAGCTCTTGAAGAAAGTCAGATAGGTACTGTGATTTCTATGGTGCCGCCTTACCCTGCATCCGTTGTCAGTATTTTGTCATTCATACGAGTATAGCGCAACTTTTGCTGCATTAAATGTATTGTGTGTACCTCCATTTTTTGCCATATGTGCTATAGGTTAGTCGTTCTTTTGTGGAGAGCTATGAATCTAGACTGTAAGGTTGGAACTTTAGCTGTGGCTTCTTCATGAGATGAGATTGAGATAATTAAATCATGTTTATACGATCTTCAGTTGTAACATGCAACGTTTTACGTAGTCAGAATTGCAGTGGAGTACTGGCTTTATGCCCCAAGTATAGAGCCCTTTTGATGTAATTTTCAGCTACAAGTTGTTACTACCAAGTGGCATTTTTTTAAAGAAAATCCCTTGGGTATTTTGGTTTCTCATTACCGGTGAAAGCTAGCTAGAGCCTAGCACCACCAGTTTATCGAATATACGCAGTGTATTTGTGTTTGAACATGCTAAAAAAAAAAAAAAA] [-] EMBL CA762619 [CTGCATATTCATTCCGGGGAAGGTACCTNTGCTGCCCGGATCCCTTTCACGAGAGAGGTCTTTGATGAGAAGGGAGTGAAATCATCATTCAACATGATGTCTCATCATGCGTGGGAAGTAGAGAAGAGTTATGCGGCCCCAGAGTTTGAGAAGGTAGAGCTCTTGAAGAAAGTCAGATAGGTACTGTGATTTCTATGGTGCCGCCTTACCCTGCATCCGTTGTCAGTATTTTGTCATTCATACGAGTATAGCGCAACTTTTGCTGCATTAAATGTATTGTGTGTACCTCCATTTTTTGCCATATGTGCTATAGGTTAGTCGTTCTTTTGTGGAGAGCTATGAATCTAGACTGTAAGGTTGGAACTTTAGCTGTGGCTTCTTCATGAGATGAGATTGAGATAATTAAATCATGTTTATACGATCTTCAGTTGTAACATGCAACGTTTTACGTAGTCAGAATTGCAGTGGAGTACTGGCTTTATGCCCCAAGTATAGAGCCCTTTTGATGTAATTTTCAGCTACAAGTTGTTACTACCAAGTGGCATTTTTTTAAAGAAAATCCCTTGGGTATTTTGGTTTCTCATTACCGGTGAAAGCTAGCTAGAGCCTAGCACCACCAGTTTATCGAATATACGCAGTGTATTTGTGTTTGAACATGCTAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6107#0 CATGTCGCCGCCTCCCTCCTCCCTCCTCCCCTCCCCGCTCCCATCTCCGCCCATCCTCCT 60 consensus_6107#1 ------------------------------------------------------------ consensus_6107#0 CTCCACCAACCCCTCCTCCCTGCGCCTCCCGCCGCTCGCCGCCGGGAGGCGCGGGGCCGA 120 consensus_6107#1 ------------------------------------------------------------ consensus_6107#0 GCGGGCCGTGGCTGCGGCGGCGGCGTCCGCGCCCGCGCCCGCGACGCCCGTGCAGGCGCA 180 consensus_6107#1 ------------------------------------------------------------ consensus_6107#0 GCAGCGGGCGTCCCGGCCGTCGGCGGCCGAGGTGGCGCGGACGGTGGTGGAGCTTGCGCC 240 consensus_6107#1 ------------------------------------------------------------ consensus_6107#0 GTCGGGGACGCTCTCCGTGGTCGGCCCCGACGGCTGGCCGCTCGGCGTCGGCGCCCGCTT 300 consensus_6107#1 ------------------------------------------------------------ consensus_6107#0 CGTCGCCGACGGCTCCGGCGCGCCCGCTCTGTGCCTCGCCGCCTCCGGGCCCGCCGCCGC 360 consensus_6107#1 ------------------------------------------------------------ consensus_6107#0 CGCGCCCGATGCGCCGTCCAGCTTCCACGTCGAGTTTCGTCAGAGTGGGGCCAGGACACC 420 consensus_6107#1 ------------------------------------------------------------ consensus_6107#0 TCAATGTACTTTGCTTGGTGCTTTGACTAAACCTAACGATGAATATGAATTAAAGAAGCT 480 consensus_6107#1 ------------------------------------------------------------ consensus_6107#0 TTCTACTAGGTGGCAAAAGAAATTTGGCGAGGAGATAGATCAAGATCTTTTGTATTTGAT 540 consensus_6107#1 ------------------------------------------------------------ consensus_6107#0 ATCAGTAGACAGAATCTTGCACATTGAAGATTTCAATGAGGATGGCATGTGGGTAATTCC 600 consensus_6107#1 ------------------------------------------------------------ consensus_6107#0 ATCAGAATACAGTGATGCAGAACCTGACCCTCTTCGAAATTTTGCGGAAAGCATTGTTGA 660 consensus_6107#1 ------------------------------------------------------------ consensus_6107#0 GGAAATGAACAGCAAACATGCTGAAGATGTACATAGGATATACAGTATTTATGTTGAATC 720 consensus_6107#1 ------------------------------------------------------------ consensus_6107#0 AGATTTCCAGGCGACAGAGGTGAAGATGATTTGGGTAGACAGGTTGGGTTTTGACTTGCA 780 consensus_6107#1 -------------------------------------------------------CTGCA 5 **** consensus_6107#0 TGTTCATTCCGGGGAAAGTACCTTTGCTGCCCGGATCCCTTTCACGAGAGAGGTCTCTGA 840 consensus_6107#1 TATTCATTCCGGGGAAGGTACCTNTGCTGCCCGGATCCCTTTCACGAGAGAGGTCTTTGA 65 * ************** ****** ******************************** *** consensus_6107#0 TGAGAAGGGAGTGAAATCATCATTCAACATGATGTCTCATCATGCGTGGGAAGTAGAGAA 900 consensus_6107#1 TGAGAAGGGAGTGAAATCATCATTCAACATGATGTCTCATCATGCGTGGGAAGTAGAGAA 125 ************************************************************ consensus_6107#0 GAGTTATGCGGCCCCAGAGTTTGAGAAGGTAGAGCTCTTGAAGAAAGTCAGATAGGTACT 960 consensus_6107#1 GAGTTATGCGGCCCCAGAGTTTGAGAAGGTAGAGCTCTTGAAGAAAGTCAGATAGGTACT 185 ************************************************************ consensus_6107#0 GTGATTTCTATGGTGCCGCCTTACCCTGCATCCGTTGTCAGTATTTTGTCATTCATACGA 1020 consensus_6107#1 GTGATTTCTATGGTGCCGCCTTACCCTGCATCCGTTGTCAGTATTTTGTCATTCATACGA 245 ************************************************************ consensus_6107#0 GTATAGCGCAACTTTTGTCGCATTAAATGTATTGTGTGTACCTCCATTTTTTGCCATATG 1080 consensus_6107#1 GTATAGCGCAACTTTTGCTGCATTAAATGTATTGTGTGTACCTCCATTTTTTGCCATATG 305 ***************** ***************************************** consensus_6107#0 TGCTATAGGTTAGTCGTTCTTTTGTGGAGAGCTATGAATCTAGACTGTAAGGTTGGAACT 1140 consensus_6107#1 TGCTATAGGTTAGTCGTTCTTTTGTGGAGAGCTATGAATCTAGACTGTAAGGTTGGAACT 365 ************************************************************ consensus_6107#0 TTAGCTGTGGCTTCTTCATGAGATGAGATTGAGATAATTAAATCATGTTTATACGATCTT 1200 consensus_6107#1 TTAGCTGTGGCTTCTTCATGAGATGAGATTGAGATAATTAAATCATGTTTATACGATCTT 425 ************************************************************ consensus_6107#0 CAGTTGTAACATGCAACGTTCTACGTAGTCAGAATTGCAGTGGAGTACTGGCTTTATGCC 1260 consensus_6107#1 CAGTTGTAACATGCAACGTTTTACGTAGTCAGAATTGCAGTGGAGTACTGGCTTTATGCC 485 ******************** *************************************** consensus_6107#0 CCAAGTATAGAGCACTTTTGATGTAACTAGGAAG-ATAGCCCGCGCACATGCGCGGGCAT 1319 consensus_6107#1 CCAAGTATAGAGCCCTTTTGATGTAATTTTCAGCTACAAGTTGTTACTACCAAGTGGCAT 545 ************* ************ * * * * * * ***** consensus_6107#0 CTTATCTGATGTTGTTTTAAATTGTGTTAAGAATGTTTTATGTGGGT------------- 1366 consensus_6107#1 TTT-TTTAAAGAAAATCCCTTGGGTATTTTGGTTTCTCATTACCGGTGAAAGCTAGCTAG 604 ** * * * * * ** ** * * * * *** consensus_6107#0 ------------------------------------------------------------ consensus_6107#1 AGCCTAGCACCACCAGTTTATCGAATATACGCAGTGTATTTGTGTTTGAACATGCTAAAA 664 consensus_6107#0 ----------- consensus_6107#1 AAAAAAAAAAA 675 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||