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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6107#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1366 fasta sequence
[CATGTCGCCGCCTCCCTCCTCCCTCCTCCCCTCCCCGCTCCCATCTCCGCCCATCCTCCTCTCCACCAACCCCTCCTCCCTGCGCCTCCCGCCGCTCGCCGCCGGGAGGCGCGGGGCCGAGCGGGCCGTGGCTGCGGCGGCGGCGTCCGCGCCCGCGCCCGCGACGCCCGTGCAGGCGCAGCAGCGGGCGTCCCGGCCGTCGGCGGCCGAGGTGGCGCGGACGGTGGTGGAGCTTGCGCCGTCGGGGACGCTCTCCGTGGTCGGCCCCGACGGCTGGCCGCTCGGCGTCGGCGCCCGCTTCGTCGCCGACGGCTCCGGCGCGCCCGCTCTGTGCCTCGCCGCCTCCGGGCCCGCCGCCGCCGCGCCCGATGCGCCGTCCAGCTTCCACGTCGAGTTTCGTCAGAGTGGGGCCAGGACACCTCAATGTACTTTGCTTGGTGCTTTGACTAAACCTAACGATGAATATGAATTAAAGAAGCTTTCTACTAGGTGGCAAAAGAAATTTGGCGAGGAGATAGATCAAGATCTTTTGTATTTGATATCAGTAGACAGAATCTTGCACATTGAAGATTTCAATGAGGATGGCATGTGGGTAATTCCATCAGAATACAGTGATGCAGAACCTGACCCTCTTCGAAATTTTGCGGAAAGCATTGTTGAGGAAATGAACAGCAAACATGCTGAAGATGTACATAGGATATACAGTATTTATGTTGAATCAGATTTCCAGGCGACAGAGGTGAAGATGATTTGGGTAGACAGGTTGGGTTTTGACTTGCATGTTCA-TTCCGGGGAAAGTACCTTTGCTGCCCGGATCCCTTTCACGAGAGAGGTCTCTGATGAGAAGGGAGTGAAATCATCATTCAACATGATGTCTCATCATGCGTGGGAAGTAGAGAAGAGTTATGCGGCCCCAGAGTTTGAGAAGGTAGAGCTCTTGAAGAAAGTCAGATAGGTACTGTGATTTCTATGGTGCCGCCTTACCCTGCATCCGTTGTCAGTATTTTGTCATTCATACGAGTATAGCGCAACTTTTGTCGCATTAAATGTATTGTGTGTACCTCCATTTTTTGCCATATGTGCTATAGGTTAGTCGTTCTTTTGTGGAGAGCTATGAATCTAGACTGTAAGGTTGGAACTTTAGCTGTGGCTTCTTCATGAGATGAGATTGAGATAATTAAATCATGTTTATACGATCTTCAGTTGTAACATGCAACGTTCTACGTAGTCAGAATTGCAGTGGAGTACTGGCTTTATGCCCCAAGTATAGAGCACTTTTGATGTAACTAGGAAGATAGCCCGCGCACATGCGCGGGCATCTTATCTGATGTTGTTTTAAATTGTGTTAAGAATGTTTTATGTGGGT]
[+] EMBL AK120666 [CATGTCGCCGCCTCCCTCCTCCCTCCTCCCCTCCCCGCTCCCATCTCCGCCCATCCTCCTCTCCACCAACCCCTCCTCCCTGCGCCTCCCGCCGCTCGCCGCCGGGAGGCGCGGGGCCGAGCGGGCCGTGGCTGCGGCGGCGGCGTCCGCGCCCGCGCCCGCGACGCCCGTGCAGGCGCAGCAGCGGGCGTCCCGGCCGTCGGCGGCCGAGGTGGCGCGGACGGTGGTGGAGCTTGCGCCGTCGGGGACGCTCTCCGTGGTCGGCCCCGACGGCTGGCCGCTCGGCGTCGGCGCCCGCTTCGTCGCCGACGGCTCCGGCGCGCCCGCTCTGTGCCTCGCCGCCTCCGGGCCCGCCGCCGCCGCGCCCGATGCGCCGTCCAGCTTCCACGTCGAGTTTCGTCAGAGTGGGGCCAGGACACCTCAATGTACTTTGCTTGGTGCTTTGACTAAACCTAACGATGAATATGAATTAAAGAAGCTTTCTACTAGGTGGCAAAAGAAATTTGGCGAGGAGATAGATCAAGATCTTTTGTATTTGATATCAGTAGACAGAATCTTGCACATTGAAGATTTCAATGAGGATGGCATGTGGGTAATTCCATCAGAATACAGTGATGCAGAACCTGACCCTCTTCGAAATTTTGCGGAAAGCATTGTTGAGGAAATGAACAGCAAACATGCTGAAGATGTACATAGGATATACAGTATTTATGTTGAATCAGATTTCCAGGCGACAGAGGTGAAGATGATTTGGGTAGACAGGTTGGGTTTTGACTTGCATGTTCA TTCCGGGGAAAGTACCTTTGCTGCCCGGATCCCTTTCACGAGAGAGGTCTCTGATGAGAAGGGAGTGAAATCATCATTCAACATGATGTCTCATCATGCGTGGGAAGTAGAGAAGAGTTATGCGGCCCCAGAGTTTGAGAAGGTAGAGCTCTTGAAGAAAGTCAGATAGGTACTGTGATTTCTATGGTGCCGCCTTACCCTGCATCCGTTGTCAGTATTTTGTCATTCATACGAGTATAGCGCAACTTTTGTCGCATTAAATGTATTGTGTGTACCTCCATTTTTTGCCATATGTGCTATAGGTTAGTCGTTCTTTTGTGGAGAGCTATGAATCTAGACTGTAAGGTTGGAACTTTAGCTGTGGCTTCTTCATGAGATGAGATTGAGATAATTAAATCATGTTTATACGATCTTCAGTTGTAACATGCAACGTTCTACGTAGTCAGAATTGCAGTGGAGTACTGGCTTTATGCCCCAAGTATAGAGCACTTTTGATGTAACTAGGAAGATAGCCCGCGCACATGCGCGGGCATCTTATCTGATGTTGTTTTAAATTGTGTTAAGAATGTTTTATGTGGGT]
[+] EMBL BI805152 [ AGATGTACATAGGATATAC GTATTTATGTTGAATCAGATTT CAGGCGACAGAGGTGAAGATGATTTGGGTAGACACGTT GGTTTTGACTTGCATGTTCACTTCCGGGGAAGGTACCTTTGCTGCCCGGATCCCTTTCACGAGAGAGGTCTCTGATGAGAAGGGAGTGAAATCATCATTCAACATGATGTCTCATCATGCGTGGGAAGTAGAGAAGAGTTATGCGGCCCCAGAGTTTGAGAAGGTAGAGCTCTTGAAGAAAGTCAGATAGGTACTGTGATTTCTATGGTGCCGCCTTACCCTGCATCCGTTGTCAGTATTTTGTCATTCATACGAGTATAGCGCAACTTTTGCTGCATTAAATGTATTGTGTGTACCTCCATTTTTTGCCATATGTGCTATAGGTTAGTCGTTCTTTTGTGGAGAGCTATGAATCTAGACTGTAAGGTTGGAACTTTAGCTGTGGCTTCTTCATGAGATGAGATTGAGATAAAAAAAaa ]
[+] EMBL AK058255 [ CTTGAAGAAAGTCAGATAGGTACTGTGATTTCTATGGTGCCGCCTTACCCTGCATCCGTTGTCAGTATTTTGTCATTCATACGAGTATAGCGCAACTTTTGTCGCATTAAATGTATTGTGTGTACCTCCATTTTTTGCCATATGTGCTATAGGTTAGTCGTTCTTTTGTGGAGAGCTATGAATCTAGACTGTAAGGTTGGAACTTTAGCTGTGGCTTCTTCATGAGATGAGATTGAGATAATTAAATCATGTTTATACGATCTTCAGTTGTAACATGCAACGTTCTACGTAGTCAGAATTGCAGTGGAGTACTGGCTTTA ]
consensusID : consensus_6107#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence
[CTGCATATTCATTCCGGGGAAGGTACCTNTGCTGCCCGGATCCCTTTCACGAGAGAGGTCTTTGATGAGAAGGGAGTGAAATCATCATTCAACATGATGTCTCATCATGCGTGGGAAGTAGAGAAGAGTTATGCGGCCCCAGAGTTTGAGAAGGTAGAGCTCTTGAAGAAAGTCAGATAGGTACTGTGATTTCTATGGTGCCGCCTTACCCTGCATCCGTTGTCAGTATTTTGTCATTCATACGAGTATAGCGCAACTTTTGCTGCATTAAATGTATTGTGTGTACCTCCATTTTTTGCCATATGTGCTATAGGTTAGTCGTTCTTTTGTGGAGAGCTATGAATCTAGACTGTAAGGTTGGAACTTTAGCTGTGGCTTCTTCATGAGATGAGATTGAGATAATTAAATCATGTTTATACGATCTTCAGTTGTAACATGCAACGTTTTACGTAGTCAGAATTGCAGTGGAGTACTGGCTTTATGCCCCAAGTATAGAGCCCTTTTGATGTAATTTTCAGCTACAAGTTGTTACTACCAAGTGGCATTTTTTTAAAGAAAATCCCTTGGGTATTTTGGTTTCTCATTACCGGTGAAAGCTAGCTAGAGCCTAGCACCACCAGTTTATCGAATATACGCAGTGTATTTGTGTTTGAACATGCTAAAAAAAAAAAAAAA]
[-] EMBL CA762619 [CTGCATATTCATTCCGGGGAAGGTACCTNTGCTGCCCGGATCCCTTTCACGAGAGAGGTCTTTGATGAGAAGGGAGTGAAATCATCATTCAACATGATGTCTCATCATGCGTGGGAAGTAGAGAAGAGTTATGCGGCCCCAGAGTTTGAGAAGGTAGAGCTCTTGAAGAAAGTCAGATAGGTACTGTGATTTCTATGGTGCCGCCTTACCCTGCATCCGTTGTCAGTATTTTGTCATTCATACGAGTATAGCGCAACTTTTGCTGCATTAAATGTATTGTGTGTACCTCCATTTTTTGCCATATGTGCTATAGGTTAGTCGTTCTTTTGTGGAGAGCTATGAATCTAGACTGTAAGGTTGGAACTTTAGCTGTGGCTTCTTCATGAGATGAGATTGAGATAATTAAATCATGTTTATACGATCTTCAGTTGTAACATGCAACGTTTTACGTAGTCAGAATTGCAGTGGAGTACTGGCTTTATGCCCCAAGTATAGAGCCCTTTTGATGTAATTTTCAGCTACAAGTTGTTACTACCAAGTGGCATTTTTTTAAAGAAAATCCCTTGGGTATTTTGGTTTCTCATTACCGGTGAAAGCTAGCTAGAGCCTAGCACCACCAGTTTATCGAATATACGCAGTGTATTTGTGTTTGAACATGCTAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6107#0 CATGTCGCCGCCTCCCTCCTCCCTCCTCCCCTCCCCGCTCCCATCTCCGCCCATCCTCCT 60
consensus_6107#1 ------------------------------------------------------------
consensus_6107#0 CTCCACCAACCCCTCCTCCCTGCGCCTCCCGCCGCTCGCCGCCGGGAGGCGCGGGGCCGA 120
consensus_6107#1 ------------------------------------------------------------
consensus_6107#0 GCGGGCCGTGGCTGCGGCGGCGGCGTCCGCGCCCGCGCCCGCGACGCCCGTGCAGGCGCA 180
consensus_6107#1 ------------------------------------------------------------
consensus_6107#0 GCAGCGGGCGTCCCGGCCGTCGGCGGCCGAGGTGGCGCGGACGGTGGTGGAGCTTGCGCC 240
consensus_6107#1 ------------------------------------------------------------
consensus_6107#0 GTCGGGGACGCTCTCCGTGGTCGGCCCCGACGGCTGGCCGCTCGGCGTCGGCGCCCGCTT 300
consensus_6107#1 ------------------------------------------------------------
consensus_6107#0 CGTCGCCGACGGCTCCGGCGCGCCCGCTCTGTGCCTCGCCGCCTCCGGGCCCGCCGCCGC 360
consensus_6107#1 ------------------------------------------------------------
consensus_6107#0 CGCGCCCGATGCGCCGTCCAGCTTCCACGTCGAGTTTCGTCAGAGTGGGGCCAGGACACC 420
consensus_6107#1 ------------------------------------------------------------
consensus_6107#0 TCAATGTACTTTGCTTGGTGCTTTGACTAAACCTAACGATGAATATGAATTAAAGAAGCT 480
consensus_6107#1 ------------------------------------------------------------
consensus_6107#0 TTCTACTAGGTGGCAAAAGAAATTTGGCGAGGAGATAGATCAAGATCTTTTGTATTTGAT 540
consensus_6107#1 ------------------------------------------------------------
consensus_6107#0 ATCAGTAGACAGAATCTTGCACATTGAAGATTTCAATGAGGATGGCATGTGGGTAATTCC 600
consensus_6107#1 ------------------------------------------------------------
consensus_6107#0 ATCAGAATACAGTGATGCAGAACCTGACCCTCTTCGAAATTTTGCGGAAAGCATTGTTGA 660
consensus_6107#1 ------------------------------------------------------------
consensus_6107#0 GGAAATGAACAGCAAACATGCTGAAGATGTACATAGGATATACAGTATTTATGTTGAATC 720
consensus_6107#1 ------------------------------------------------------------
consensus_6107#0 AGATTTCCAGGCGACAGAGGTGAAGATGATTTGGGTAGACAGGTTGGGTTTTGACTTGCA 780
consensus_6107#1 -------------------------------------------------------CTGCA 5
****
consensus_6107#0 TGTTCATTCCGGGGAAAGTACCTTTGCTGCCCGGATCCCTTTCACGAGAGAGGTCTCTGA 840
consensus_6107#1 TATTCATTCCGGGGAAGGTACCTNTGCTGCCCGGATCCCTTTCACGAGAGAGGTCTTTGA 65
* ************** ****** ******************************** ***
consensus_6107#0 TGAGAAGGGAGTGAAATCATCATTCAACATGATGTCTCATCATGCGTGGGAAGTAGAGAA 900
consensus_6107#1 TGAGAAGGGAGTGAAATCATCATTCAACATGATGTCTCATCATGCGTGGGAAGTAGAGAA 125
************************************************************
consensus_6107#0 GAGTTATGCGGCCCCAGAGTTTGAGAAGGTAGAGCTCTTGAAGAAAGTCAGATAGGTACT 960
consensus_6107#1 GAGTTATGCGGCCCCAGAGTTTGAGAAGGTAGAGCTCTTGAAGAAAGTCAGATAGGTACT 185
************************************************************
consensus_6107#0 GTGATTTCTATGGTGCCGCCTTACCCTGCATCCGTTGTCAGTATTTTGTCATTCATACGA 1020
consensus_6107#1 GTGATTTCTATGGTGCCGCCTTACCCTGCATCCGTTGTCAGTATTTTGTCATTCATACGA 245
************************************************************
consensus_6107#0 GTATAGCGCAACTTTTGTCGCATTAAATGTATTGTGTGTACCTCCATTTTTTGCCATATG 1080
consensus_6107#1 GTATAGCGCAACTTTTGCTGCATTAAATGTATTGTGTGTACCTCCATTTTTTGCCATATG 305
***************** *****************************************
consensus_6107#0 TGCTATAGGTTAGTCGTTCTTTTGTGGAGAGCTATGAATCTAGACTGTAAGGTTGGAACT 1140
consensus_6107#1 TGCTATAGGTTAGTCGTTCTTTTGTGGAGAGCTATGAATCTAGACTGTAAGGTTGGAACT 365
************************************************************
consensus_6107#0 TTAGCTGTGGCTTCTTCATGAGATGAGATTGAGATAATTAAATCATGTTTATACGATCTT 1200
consensus_6107#1 TTAGCTGTGGCTTCTTCATGAGATGAGATTGAGATAATTAAATCATGTTTATACGATCTT 425
************************************************************
consensus_6107#0 CAGTTGTAACATGCAACGTTCTACGTAGTCAGAATTGCAGTGGAGTACTGGCTTTATGCC 1260
consensus_6107#1 CAGTTGTAACATGCAACGTTTTACGTAGTCAGAATTGCAGTGGAGTACTGGCTTTATGCC 485
******************** ***************************************
consensus_6107#0 CCAAGTATAGAGCACTTTTGATGTAACTAGGAAG-ATAGCCCGCGCACATGCGCGGGCAT 1319
consensus_6107#1 CCAAGTATAGAGCCCTTTTGATGTAATTTTCAGCTACAAGTTGTTACTACCAAGTGGCAT 545
************* ************ * * * * * * *****
consensus_6107#0 CTTATCTGATGTTGTTTTAAATTGTGTTAAGAATGTTTTATGTGGGT------------- 1366
consensus_6107#1 TTT-TTTAAAGAAAATCCCTTGGGTATTTTGGTTTCTCATTACCGGTGAAAGCTAGCTAG 604
** * * * * * ** ** * * * * ***
consensus_6107#0 ------------------------------------------------------------
consensus_6107#1 AGCCTAGCACCACCAGTTTATCGAATATACGCAGTGTATTTGTGTTTGAACATGCTAAAA 664
consensus_6107#0 -----------
consensus_6107#1 AAAAAAAAAAA 675
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||