These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6109#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1038 fasta sequence [CTTGGCCTCCTGTGCCGCTGCACATATATATAGCTCCCACCACCACGAGTAATCTAACAGAATAAATCATGGGACCAGCCCACGGCCACCTCGTCCTCCTCGTCGCCGCGGTGGCGTTGCTGTCAGCTGGCTTCCTCCCGCACGCTGTGGCGAAGAAGGGCGGCGCCGTGCCACCGGCGGTTGCTGACATATGCTCTCGCACTCCATTCCCAGACACGTGCAAGAGCACCGCCGGGCGGCACGCGTCCAAGTACCCGGTGATCGACGTCGTGGCTGTGCTCAACATGCAGGTGGACGCGTTCTCCAAGCGCACGGCGCATGCGAGGGAGCGCGTGACCAAGGTGTCCCGCGGCGCACAGCCTCAGCAGACGCAGGCGCTGAGCTTCTGCGACACCATGTACATGAACACCCAGGACACCATCGGCGCCGCGGAGCGGGCGA-TC-ACCTTCAGAGACAAGGCTACGGCGAAGATCATGCTGCAGCTCGCTGTGCAGGACTTTGAGTCGTGCGATCGGCCCTTCAAGCAGTCCGGGATCAACAACCCCTTGGAGAAGATCGACGTAGAGCTCAACCAGATGGCACAAAACTGCATGACACTGGCCAGCATGATATGAGACTCATGGAGGACTGAATCGATGAGAATATGAGATGTCACGTCATTCGATCAGGATGTCCACGGATTTGGGGAGGACCTGGGTTTGGTTTTTCCTTCTTTTACAGAAATTCATTTACTAATTTTGTGTTTTATTTTCTTGACAGTGTCTAAATTTGTTAATTATCACGACCCGACCTGCGTTTGTTGTGTAGGTCTTTTAACGTGGAAGAAGAGGGCCTTTTACGTTTATCATTTTGTACTGAGTTCACTAATTTGTTCCATTTGATTGATTGATGTTTTGTGTTAATCTTTGTTGTTGTTAGTGTCGAATAGTTAATTACTAGGGGTTCCTTCCCCCGTTGCTGCAGGGCAGTGTGGGTATATATATAAAGTTGTAACAACCATACGCGTTTTCAAAGCTCGTATGCAATTCCATATTTTGC] [+] EMBL AK120717 [CTTGGCCTCCTGTGCCGCTGCACATATATATAGCTCCCACCACCACGAGTAATCTAACAGAATAAATCATGGGACCAGCCCACGGCCACCTCGTCCTCCTCGTCGCCGCGGTGGCGTTGCTGTCAGCTGGCTTCCTCCCGCACGCTGTGGCGAAGAAGGGCGGCGCCGTGCCACCGGCGGTTGCTGACATATGCTCTCGCACTCCATTCCCAGACACGTGCAAGAGCACCGCCGGGCGGCACGCGTCCAAGTACCCGGTGATCGACGTCGTGGCTGTGCTCAACATGCAGGTGGACGCGTTCTCCAAGCGCACGGCGCATGCGAGGGAGCGCGTGACCAAGGTGTCCCGCGGCGCACAGCCTCAGCAGACGCAGGCGCTGAGCTTCTGCGACACCATGTACATGAACACCCAGGACACCATCGGCGCCGCGGAGCGGGCGA TC ACCTTCAGAGACAAGGCTACGGCGAAGATCATGCTGCAGCTCGCTGTGCAGGACTTTGAGTCGTGCGATCGGCCCTTCAAGCAGTCCGGGATCAACAACCCCTTGGAGAAGATCGACGTAGAGCTCAACCAGATGGCACAAAACTGCATGACACTGGCCAGCATGATATGAGACTCATGGAGGACTGAATCGATGAGAATATGAGATGTCACGTCATTCGATCAGGATGTCCACGGATTTGGGGAGGACCTGGGTTTGGTTTTTCCTTCTTTTACAGAAATTCATTTACTAATTTTGTGTTTTATTTTCTTGACAGTGTCTAAATTTGTTAATTATCACGACCCGACCTGCGTTTGTTGTGTAGGTCTTTTAACGTGGAAGAAGAGGGCCTTTTACGTTTATCATTTTGTACTGAGTTCACTAATTTGTTCCATTTGATTGATTGATGTTTTGTGTTAATCTTTGTTGTTGTTAGTGTCGAATAGTTAATTACTAGGGGTTCCTTCCCCCGTTGCTGCAGGGCAGTGTGGGTATATATATAAAGTTGTAACAACCATACGCGTTTTCAAAGCTCGTATGCAATTCCATATTTTGC] [+] EMBL C73393 [ AGCTGGCTTCCTCCCGCACGCTGTGGCGAAGAAGGGCGGCGCCGTGCCACCGGCGGTTGCTGACATATGCTCTCGCACTCCATTCCCAGACACGTGCAAGAGCACCGCCGGGCGGCACGCNTCCAAGTACCCGGTGATCGACGTCGTGGCTGTGCTCAACATGCAGGTGGACGCNTTCTCCAAGCGCACGGCGCATGCAAGGGAGCGCGTNACCAAGGTGTCCCGCGGCGCACAGCCTCAGCAGACGCAGGCGCTGAGCTTCTGCNACACCATGTACATGAACACCCAGGACANCATCGGCGCCGCGGAG GGCGGATTCAACCTTCAGAGACAAGGCTACGGCGAAGATC ] consensusID : consensus_6109#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 471 fasta sequence [TGAACACCCAGGACACCATCGGCGCCGCGGANCGGGCGATCACCTTCAGAGACAAGGCTACGGCGAAGATCATGCTGCAGCTCGCTGTGCAGGACTTTNAGTCGTGCGATCGGCCCTTCAAGCAGTCCGGGATCAACAACCCCTTGGANAAGATCGACGTANAGCTCAACCAGATGGCNCAAAACTGCATGACACTGGCCAGCATGATATGAGACTCATGAAGGACTGAATCGATGAGAATATGAGATGTCACGTCATTCGATCAGGATGTCCNCGGATTTGGGGAGGACCTGGGTTTGGTTTTTCCTTCTTTTACAGAAATTCATTTACTAATTTTGTGTTTTATTTTCTTGACAGTGTCTAAATTTGTTAATTATCNCGACCCGACCTGCGTTTGTTGTGTAGGTCTTTTAACGTGGAANAANAGGGCCTTTTACGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU081291 [TGAACACCCAGGACACCATCGGCGCCGCGGANCGGGCGATCACCTTCAGAGACAAGGCTACGGCGAAGATCATGCTGCAGCTCGCTGTGCAGGACTTTNAGTCGTGCGATCGGCCCTTCAAGCAGTCCGGGATCAACAACCCCTTGGANAAGATCGACGTANAGCTCAACCAGATGGCNCAAAACTGCATGACACTGGCCAGCATGATATGAGACTCATGAAGGACTGAATCGATGAGAATATGAGATGTCACGTCATTCGATCAGGATGTCCNCGGATTTGGGGAGGACCTGGGTTTGGTTTTTCCTTCTTTTACAGAAATTCATTTACTAATTTTGTGTTTTATTTTCTTGACAGTGTCTAAATTTGTTAATTATCNCGACCCGACCTGCGTTTGTTGTGTAGGTCTTTTAACGTGGAANAANAGGGCCTTTTACGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_6109#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 264 fasta sequence [TCTTGACAGTGTCTAAATTTGTTAATTATCACGACCCGACCTGCGTTTGTTGTGTAGGTCTTTTAACGTGGAAGAAGAGGGCCTTTTACCGTTTATCATTTTGTACTGAGTTCACTAATTTGTTCCATTTGATTGATTGATGTTTTGTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAN] [-] EMBL AU176460 [TCTTGACAGTGTCTAAATTTGTTAATTATCACGACCCGACCTGCGTTTGTTGTGTAGGTCTTTTAACGTGGAAGAAGAGGGCCTTTTACCGTTTATCATTTTGTACTGAGTTCACTAATTTGTTCCATTTGATTGATTGATGTTTTGTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6109#0 CTTGGCCTCCTGTGCCGCTGCACATATATATAGCTCCCACCACCACGAGTAATCTAACAG 60 consensus_6109#1 ------------------------------------------------------------ consensus_6109#2 ------------------------------------------------------------ consensus_6109#0 AATAAATCATGGGACCAGCCCACGGCCACCTCGTCCTCCTCGTCGCCGCGGTGGCGTTGC 120 consensus_6109#1 ------------------------------------------------------------ consensus_6109#2 ------------------------------------------------------------ consensus_6109#0 TGTCAGCTGGCTTCCTCCCGCACGCTGTGGCGAAGAAGGGCGGCGCCGTGCCACCGGCGG 180 consensus_6109#1 ------------------------------------------------------------ consensus_6109#2 ------------------------------------------------------------ consensus_6109#0 TTGCTGACATATGCTCTCGCACTCCATTCCCAGACACGTGCAAGAGCACCGCCGGGCGGC 240 consensus_6109#1 ------------------------------------------------------------ consensus_6109#2 ------------------------------------------------------------ consensus_6109#0 ACGCGTCCAAGTACCCGGTGATCGACGTCGTGGCTGTGCTCAACATGCAGGTGGACGCGT 300 consensus_6109#1 ------------------------------------------------------------ consensus_6109#2 ------------------------------------------------------------ consensus_6109#0 TCTCCAAGCGCACGGCGCATGCGAGGGAGCGCGTGACCAAGGTGTCCCGCGGCGCACAGC 360 consensus_6109#1 ------------------------------------------------------------ consensus_6109#2 ------------------------------------------------------------ consensus_6109#0 CTCAGCAGACGCAGGCGCTGAGCTTCTGCGACACCATGTACATGAACACCCAGGACACCA 420 consensus_6109#1 ------------------------------------------TGAACACCCAGGACACCA 18 consensus_6109#2 ------------------------------------------------------------ consensus_6109#0 TCGGCGCCGCGGAGCGGGCGATCACCTTCAGAGACAAGGCTACGGCGAAGATCATGCTGC 480 consensus_6109#1 TCGGCGCCGCGGANCGGGCGATCACCTTCAGAGACAAGGCTACGGCGAAGATCATGCTGC 78 consensus_6109#2 ------------------------------------------------------------ consensus_6109#0 AGCTCGCTGTGCAGGACTTTGAGTCGTGCGATCGGCCCTTCAAGCAGTCCGGGATCAACA 540 consensus_6109#1 AGCTCGCTGTGCAGGACTTTNAGTCGTGCGATCGGCCCTTCAAGCAGTCCGGGATCAACA 138 consensus_6109#2 ------------------------------------------------------------ consensus_6109#0 ACCCCTTGGAGAAGATCGACGTAGAGCTCAACCAGATGGCACAAAACTGCATGACACTGG 600 consensus_6109#1 ACCCCTTGGANAAGATCGACGTANAGCTCAACCAGATGGCNCAAAACTGCATGACACTGG 198 consensus_6109#2 ------------------------------------------------------------ consensus_6109#0 CCAGCATGATATGAGACTCATGGAGGACTGAATCGATGAGAATATGAGATGTCACGT-CA 659 consensus_6109#1 CCAGCATGATATGAGACTCATGAAGGACTGAATCGATGAGAATATGAGATGTCACGT-CA 257 consensus_6109#2 ---------------TCTTGACAGTGTCTAAATTTGTTAATTATCACGACCCGACCTGCG 45 ** * ** *** * * ** ** * * consensus_6109#0 TTCGATCAGGATGTCCACGGATTTGGGGAGGACCTGGGTTTGGTTTTTCCTTCTTTTACA 719 consensus_6109#1 TTCGATCAGGATGTCCNCGGATTTGGGGAGGACCTGGGTTTGGTTTTTCCTTCTTTTACA 317 consensus_6109#2 TTTGTTGTGTAGGTCTTTTAACGTGGAAGAAGAGGGCCTTTTACCGTTTATCATTTTGTA 105 ** * * * * *** * *** * *** ** * **** * consensus_6109#0 GAAATTCATTTACTAATTTTGTGTTTTATTTTCTTGACAG-TGTCTAAATTTGTTAATTA 778 consensus_6109#1 GAAATTCATTTACTAATTTTGTGTTTTATTTTCTTGACAG-TGTCTAAATTTGTTAATTA 376 consensus_6109#2 CTGA---GTTCACTAATTT---GTTCCATTTGATTGATTGATGTTTTGTGTTAAAAAAAA 159 * ** ******** *** **** **** * *** * ** ** * consensus_6109#0 TCACGACCCGACCTGCGTTTGTTGTGTAGGTCTTTTAACGTGGAAGAAGAGGGCCTTTTA 838 consensus_6109#1 TCNCGACCCGACCTGCGTTTGTTGTGTAGGTCTTTTAACGTGGAANAANAGGGCCTTTTA 436 consensus_6109#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 219 * * * ** ** ** * * consensus_6109#0 CGTTTATCATTTTGTACTGAGTTCACTAATTTGTTCCATTTGATTGATTGATGTTTTGTG 898 consensus_6109#1 CGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------- 471 consensus_6109#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAN--------------- 264 * * * * * ** consensus_6109#0 TTAATCTTTGTTGTTGTTAGTGTCGAATAGTTAATTACTAGGGGTTCCTTCCCCCGTTGC 958 consensus_6109#1 ------------------------------------------------------------ consensus_6109#2 ------------------------------------------------------------ consensus_6109#0 TGCAGGGCAGTGTGGGTATATATATAAAGTTGTAACAACCATACGCGTTTTCAAAGCTCG 1018 consensus_6109#1 ------------------------------------------------------------ consensus_6109#2 ------------------------------------------------------------ consensus_6109#0 TATGCAATTCCATATTTTGC 1038 consensus_6109#1 -------------------- consensus_6109#2 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||