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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6109#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1038 fasta sequence
[CTTGGCCTCCTGTGCCGCTGCACATATATATAGCTCCCACCACCACGAGTAATCTAACAGAATAAATCATGGGACCAGCCCACGGCCACCTCGTCCTCCTCGTCGCCGCGGTGGCGTTGCTGTCAGCTGGCTTCCTCCCGCACGCTGTGGCGAAGAAGGGCGGCGCCGTGCCACCGGCGGTTGCTGACATATGCTCTCGCACTCCATTCCCAGACACGTGCAAGAGCACCGCCGGGCGGCACGCGTCCAAGTACCCGGTGATCGACGTCGTGGCTGTGCTCAACATGCAGGTGGACGCGTTCTCCAAGCGCACGGCGCATGCGAGGGAGCGCGTGACCAAGGTGTCCCGCGGCGCACAGCCTCAGCAGACGCAGGCGCTGAGCTTCTGCGACACCATGTACATGAACACCCAGGACACCATCGGCGCCGCGGAGCGGGCGA-TC-ACCTTCAGAGACAAGGCTACGGCGAAGATCATGCTGCAGCTCGCTGTGCAGGACTTTGAGTCGTGCGATCGGCCCTTCAAGCAGTCCGGGATCAACAACCCCTTGGAGAAGATCGACGTAGAGCTCAACCAGATGGCACAAAACTGCATGACACTGGCCAGCATGATATGAGACTCATGGAGGACTGAATCGATGAGAATATGAGATGTCACGTCATTCGATCAGGATGTCCACGGATTTGGGGAGGACCTGGGTTTGGTTTTTCCTTCTTTTACAGAAATTCATTTACTAATTTTGTGTTTTATTTTCTTGACAGTGTCTAAATTTGTTAATTATCACGACCCGACCTGCGTTTGTTGTGTAGGTCTTTTAACGTGGAAGAAGAGGGCCTTTTACGTTTATCATTTTGTACTGAGTTCACTAATTTGTTCCATTTGATTGATTGATGTTTTGTGTTAATCTTTGTTGTTGTTAGTGTCGAATAGTTAATTACTAGGGGTTCCTTCCCCCGTTGCTGCAGGGCAGTGTGGGTATATATATAAAGTTGTAACAACCATACGCGTTTTCAAAGCTCGTATGCAATTCCATATTTTGC]
[+] EMBL AK120717 [CTTGGCCTCCTGTGCCGCTGCACATATATATAGCTCCCACCACCACGAGTAATCTAACAGAATAAATCATGGGACCAGCCCACGGCCACCTCGTCCTCCTCGTCGCCGCGGTGGCGTTGCTGTCAGCTGGCTTCCTCCCGCACGCTGTGGCGAAGAAGGGCGGCGCCGTGCCACCGGCGGTTGCTGACATATGCTCTCGCACTCCATTCCCAGACACGTGCAAGAGCACCGCCGGGCGGCACGCGTCCAAGTACCCGGTGATCGACGTCGTGGCTGTGCTCAACATGCAGGTGGACGCGTTCTCCAAGCGCACGGCGCATGCGAGGGAGCGCGTGACCAAGGTGTCCCGCGGCGCACAGCCTCAGCAGACGCAGGCGCTGAGCTTCTGCGACACCATGTACATGAACACCCAGGACACCATCGGCGCCGCGGAGCGGGCGA TC ACCTTCAGAGACAAGGCTACGGCGAAGATCATGCTGCAGCTCGCTGTGCAGGACTTTGAGTCGTGCGATCGGCCCTTCAAGCAGTCCGGGATCAACAACCCCTTGGAGAAGATCGACGTAGAGCTCAACCAGATGGCACAAAACTGCATGACACTGGCCAGCATGATATGAGACTCATGGAGGACTGAATCGATGAGAATATGAGATGTCACGTCATTCGATCAGGATGTCCACGGATTTGGGGAGGACCTGGGTTTGGTTTTTCCTTCTTTTACAGAAATTCATTTACTAATTTTGTGTTTTATTTTCTTGACAGTGTCTAAATTTGTTAATTATCACGACCCGACCTGCGTTTGTTGTGTAGGTCTTTTAACGTGGAAGAAGAGGGCCTTTTACGTTTATCATTTTGTACTGAGTTCACTAATTTGTTCCATTTGATTGATTGATGTTTTGTGTTAATCTTTGTTGTTGTTAGTGTCGAATAGTTAATTACTAGGGGTTCCTTCCCCCGTTGCTGCAGGGCAGTGTGGGTATATATATAAAGTTGTAACAACCATACGCGTTTTCAAAGCTCGTATGCAATTCCATATTTTGC]
[+] EMBL C73393 [ AGCTGGCTTCCTCCCGCACGCTGTGGCGAAGAAGGGCGGCGCCGTGCCACCGGCGGTTGCTGACATATGCTCTCGCACTCCATTCCCAGACACGTGCAAGAGCACCGCCGGGCGGCACGCNTCCAAGTACCCGGTGATCGACGTCGTGGCTGTGCTCAACATGCAGGTGGACGCNTTCTCCAAGCGCACGGCGCATGCAAGGGAGCGCGTNACCAAGGTGTCCCGCGGCGCACAGCCTCAGCAGACGCAGGCGCTGAGCTTCTGCNACACCATGTACATGAACACCCAGGACANCATCGGCGCCGCGGAG GGCGGATTCAACCTTCAGAGACAAGGCTACGGCGAAGATC ]
consensusID : consensus_6109#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 471 fasta sequence
[TGAACACCCAGGACACCATCGGCGCCGCGGANCGGGCGATCACCTTCAGAGACAAGGCTACGGCGAAGATCATGCTGCAGCTCGCTGTGCAGGACTTTNAGTCGTGCGATCGGCCCTTCAAGCAGTCCGGGATCAACAACCCCTTGGANAAGATCGACGTANAGCTCAACCAGATGGCNCAAAACTGCATGACACTGGCCAGCATGATATGAGACTCATGAAGGACTGAATCGATGAGAATATGAGATGTCACGTCATTCGATCAGGATGTCCNCGGATTTGGGGAGGACCTGGGTTTGGTTTTTCCTTCTTTTACAGAAATTCATTTACTAATTTTGTGTTTTATTTTCTTGACAGTGTCTAAATTTGTTAATTATCNCGACCCGACCTGCGTTTGTTGTGTAGGTCTTTTAACGTGGAANAANAGGGCCTTTTACGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU081291 [TGAACACCCAGGACACCATCGGCGCCGCGGANCGGGCGATCACCTTCAGAGACAAGGCTACGGCGAAGATCATGCTGCAGCTCGCTGTGCAGGACTTTNAGTCGTGCGATCGGCCCTTCAAGCAGTCCGGGATCAACAACCCCTTGGANAAGATCGACGTANAGCTCAACCAGATGGCNCAAAACTGCATGACACTGGCCAGCATGATATGAGACTCATGAAGGACTGAATCGATGAGAATATGAGATGTCACGTCATTCGATCAGGATGTCCNCGGATTTGGGGAGGACCTGGGTTTGGTTTTTCCTTCTTTTACAGAAATTCATTTACTAATTTTGTGTTTTATTTTCTTGACAGTGTCTAAATTTGTTAATTATCNCGACCCGACCTGCGTTTGTTGTGTAGGTCTTTTAACGTGGAANAANAGGGCCTTTTACGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_6109#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 264 fasta sequence
[TCTTGACAGTGTCTAAATTTGTTAATTATCACGACCCGACCTGCGTTTGTTGTGTAGGTCTTTTAACGTGGAAGAAGAGGGCCTTTTACCGTTTATCATTTTGTACTGAGTTCACTAATTTGTTCCATTTGATTGATTGATGTTTTGTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAN]
[-] EMBL AU176460 [TCTTGACAGTGTCTAAATTTGTTAATTATCACGACCCGACCTGCGTTTGTTGTGTAGGTCTTTTAACGTGGAAGAAGAGGGCCTTTTACCGTTTATCATTTTGTACTGAGTTCACTAATTTGTTCCATTTGATTGATTGATGTTTTGTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6109#0 CTTGGCCTCCTGTGCCGCTGCACATATATATAGCTCCCACCACCACGAGTAATCTAACAG 60
consensus_6109#1 ------------------------------------------------------------
consensus_6109#2 ------------------------------------------------------------
consensus_6109#0 AATAAATCATGGGACCAGCCCACGGCCACCTCGTCCTCCTCGTCGCCGCGGTGGCGTTGC 120
consensus_6109#1 ------------------------------------------------------------
consensus_6109#2 ------------------------------------------------------------
consensus_6109#0 TGTCAGCTGGCTTCCTCCCGCACGCTGTGGCGAAGAAGGGCGGCGCCGTGCCACCGGCGG 180
consensus_6109#1 ------------------------------------------------------------
consensus_6109#2 ------------------------------------------------------------
consensus_6109#0 TTGCTGACATATGCTCTCGCACTCCATTCCCAGACACGTGCAAGAGCACCGCCGGGCGGC 240
consensus_6109#1 ------------------------------------------------------------
consensus_6109#2 ------------------------------------------------------------
consensus_6109#0 ACGCGTCCAAGTACCCGGTGATCGACGTCGTGGCTGTGCTCAACATGCAGGTGGACGCGT 300
consensus_6109#1 ------------------------------------------------------------
consensus_6109#2 ------------------------------------------------------------
consensus_6109#0 TCTCCAAGCGCACGGCGCATGCGAGGGAGCGCGTGACCAAGGTGTCCCGCGGCGCACAGC 360
consensus_6109#1 ------------------------------------------------------------
consensus_6109#2 ------------------------------------------------------------
consensus_6109#0 CTCAGCAGACGCAGGCGCTGAGCTTCTGCGACACCATGTACATGAACACCCAGGACACCA 420
consensus_6109#1 ------------------------------------------TGAACACCCAGGACACCA 18
consensus_6109#2 ------------------------------------------------------------
consensus_6109#0 TCGGCGCCGCGGAGCGGGCGATCACCTTCAGAGACAAGGCTACGGCGAAGATCATGCTGC 480
consensus_6109#1 TCGGCGCCGCGGANCGGGCGATCACCTTCAGAGACAAGGCTACGGCGAAGATCATGCTGC 78
consensus_6109#2 ------------------------------------------------------------
consensus_6109#0 AGCTCGCTGTGCAGGACTTTGAGTCGTGCGATCGGCCCTTCAAGCAGTCCGGGATCAACA 540
consensus_6109#1 AGCTCGCTGTGCAGGACTTTNAGTCGTGCGATCGGCCCTTCAAGCAGTCCGGGATCAACA 138
consensus_6109#2 ------------------------------------------------------------
consensus_6109#0 ACCCCTTGGAGAAGATCGACGTAGAGCTCAACCAGATGGCACAAAACTGCATGACACTGG 600
consensus_6109#1 ACCCCTTGGANAAGATCGACGTANAGCTCAACCAGATGGCNCAAAACTGCATGACACTGG 198
consensus_6109#2 ------------------------------------------------------------
consensus_6109#0 CCAGCATGATATGAGACTCATGGAGGACTGAATCGATGAGAATATGAGATGTCACGT-CA 659
consensus_6109#1 CCAGCATGATATGAGACTCATGAAGGACTGAATCGATGAGAATATGAGATGTCACGT-CA 257
consensus_6109#2 ---------------TCTTGACAGTGTCTAAATTTGTTAATTATCACGACCCGACCTGCG 45
** * ** *** * * ** ** * *
consensus_6109#0 TTCGATCAGGATGTCCACGGATTTGGGGAGGACCTGGGTTTGGTTTTTCCTTCTTTTACA 719
consensus_6109#1 TTCGATCAGGATGTCCNCGGATTTGGGGAGGACCTGGGTTTGGTTTTTCCTTCTTTTACA 317
consensus_6109#2 TTTGTTGTGTAGGTCTTTTAACGTGGAAGAAGAGGGCCTTTTACCGTTTATCATTTTGTA 105
** * * * * *** * *** * *** ** * **** *
consensus_6109#0 GAAATTCATTTACTAATTTTGTGTTTTATTTTCTTGACAG-TGTCTAAATTTGTTAATTA 778
consensus_6109#1 GAAATTCATTTACTAATTTTGTGTTTTATTTTCTTGACAG-TGTCTAAATTTGTTAATTA 376
consensus_6109#2 CTGA---GTTCACTAATTT---GTTCCATTTGATTGATTGATGTTTTGTGTTAAAAAAAA 159
* ** ******** *** **** **** * *** * ** ** *
consensus_6109#0 TCACGACCCGACCTGCGTTTGTTGTGTAGGTCTTTTAACGTGGAAGAAGAGGGCCTTTTA 838
consensus_6109#1 TCNCGACCCGACCTGCGTTTGTTGTGTAGGTCTTTTAACGTGGAANAANAGGGCCTTTTA 436
consensus_6109#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 219
* * * ** ** ** * *
consensus_6109#0 CGTTTATCATTTTGTACTGAGTTCACTAATTTGTTCCATTTGATTGATTGATGTTTTGTG 898
consensus_6109#1 CGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------- 471
consensus_6109#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAN--------------- 264
* * * * * **
consensus_6109#0 TTAATCTTTGTTGTTGTTAGTGTCGAATAGTTAATTACTAGGGGTTCCTTCCCCCGTTGC 958
consensus_6109#1 ------------------------------------------------------------
consensus_6109#2 ------------------------------------------------------------
consensus_6109#0 TGCAGGGCAGTGTGGGTATATATATAAAGTTGTAACAACCATACGCGTTTTCAAAGCTCG 1018
consensus_6109#1 ------------------------------------------------------------
consensus_6109#2 ------------------------------------------------------------
consensus_6109#0 TATGCAATTCCATATTTTGC 1038
consensus_6109#1 --------------------
consensus_6109#2 --------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||