These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6118#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1628 fasta sequence [TCTTCCTCGCCCCCACCCCAAAAACCCTAGCCGCCGCCACCGCCGCCGCCGCCGCCGTTTGCTCGAGCATGTACTACTACTCGCTGCGAGGTGGCGCGTGCGTCTACCTTGTGGCGGCGTGATACGATACGACGCGTGCGGGGGGAAGGGAAGCCGAGGTTTGACTTGAGTGGTGAGCCGGGCATGGAGGAGAGGCCATAGATCGAAGGGAGGCGCCTCCGCCGCCGAAGGAAGCGGCGGCGGAGAAGGTGGATGGCTCCCCGCAACCCCAGCCCCAGGCGGAGCTGCGGCTGCGGCTCCCGGCGGAGATCGACTGGGACCGGCTCGACAAGTGGAGGTTCTTCGTCCTCGGCGCCGGCCTCTTCTCCGCCGTCTCCACCGCGCTCTACCCCGCCGTCGTCCTCAAGACGCGCCTCCAGGTCGCCCCCTCGCCCGCGCACGCCGCGGCGTCGTCGCTCCCGCCCTCCGCCGCCGCCGCGGCCACCGCCATCCTGCGGAGCGAGGGGCCCCTCGCCTTCTACCGCGGCTTCGCCACCTCCCTCGCGGGCACCGTCCCGGCGCGCGCGCTCTACATGGGCGCGCTCGAGGCCACGCGCTCGGCCGTGGGCCCGACAGCGCTCGCCCTCGGCGCGCCAGAGCCCGTGGCTTCCGCGGCCGCGGGCGCCGCGGCGGGGCTCGCCGCCGCCGTGGCGGCGCAGGTGGTGTGGACGCCCGTCGACGTCATCAGCCAGCGCCTCATGGTGCAGGGGAACCCGTGCCCGGCCTCCCGCTACCGCGGCGGCCTCGACGCCTTCCGCAAGATCGTGGCCGCCGACGGCCTCCGCGGCCTGTACCGCGGCTTCGGCATGTCCATCCTAACCTATGCACCCTCCAATGCCGTGTGGTGGGCGACCTACTCGCTGTCGCAGAAGACGATTTGGAGCGGAATTGGTTGCTACCTGTGCGAGTACGGTGTTGGTGTCCAAGAAATCGATGCCGGGGAAGGGGATTCCTCCCTGCAGCCGGGTTACAGGACTGTCATGGTGGTGCAGGGAGTGAGCGCGGCGATGGCCGGTGGCGCTTCCGCCCTTGTGACCATGCCATTGGACACCATCAAGACCAGGATGCAGGTCATGGATGGGGAAGGCGGCGAGCCGATTACGGTGGGGAGGACGGTGAGGAGGCTGATCAAGGAGGGTGGATGGGGAGCGTGTTACAGGGGGCTCGGCCCGAGGTGGGCGTCAATGTCGCTGTCTGCCACCACCATGATCACCACGTACGAGTTCCTCAAGCGGCTCTCCGCCAAGGGGCATGAGAGCAGCCTCCCCTGACGAGACGAATAGATGATGCAAATAGGTGACCTTGCTTTGTTACTTTCATTCCTTTCCAATGCTTGTTTCATCTTTTAGGTGTTGCAAAGAGTTGTTTGTAGATAGTCTTTGTTTGCTCCTCTAATTAAGCTAAGCAAATCAATGCAATCCACTCTTTCAGAATGTTTTCTGTGCTATCAATAGGTTTTGCCTTTTAGCTTCTGAATCTTCACAACGGAGTAATTCATGTATACTGAAAAATTCCTGTCCATCTATATAAACGGCTGGTTCTCCATGCTGCAATGTTTTACTATAAGAAATTAAGAATCATGCTCATTG] [+] EMBL AK120833 [TCTTCCTCGCCCCCACCCCAAAAACCCTAGCCGCCGCCACCGCCGCCGCCGCCGCCGTTTGCTCGAGCATGTACTACTACTCGCTGCGAGGTGGCGCGTGCGTCTACCTTGTGGCGGCGTGATACGATACGACGCGTGCGGGGGGAAGGGAAGCCGAGGTTTGACTTGAGTGGTGAGCCGGGCATGGAGGAGAGGCCATAGATCGAAGGGAGGCGCCTCCGCCGCCGAAGGAAGCGGCGGCGGAGAAGGTGGATGGCTCCCCGCAACCCCAGCCCCAGGCGGAGCTGCGGCTGCGGCTCCCGGCGGAGATCGACTGGGACCGGCTCGACAAGTGGAGGTTCTTCGTCCTCGGCGCCGGCCTCTTCTCCGCCGTCTCCACCGCGCTCTACCCCGCCGTCGTCCTCAAGACGCGCCTCCAGGTCGCCCCCTCGCCCGCGCACGCCGCGGCGTCGTCGCTCCCGCCCTCCGCCGCCGCCGCGGCCACCGCCATCCTGCGGAGCGAGGGGCCCCTCGCCTTCTACCGCGGCTTCGCCACCTCCCTCGCGGGCACCGTCCCGGCGCGCGCGCTCTACATGGGCGCGCTCGAGGCCACGCGCTCGGCCGTGGGCCCGACAGCGCTCGCCCTCGGCGCGCCAGAGCCCGTGGCTTCCGCGGCCGCGGGCGCCGCGGCGGGGCTCGCCGCCGCCGTGGCGGCGCAGGTGGTGTGGACGCCCGTCGACGTCATCAGCCAGCGCCTCATGGTGCAGGGGAACCCGTGCCCGGCCTCCCGCTACCGCGGCGGCCTCGACGCCTTCCGCAAGATCGTGGCCGCCGACGGCCTCCGCGGCCTGTACCGCGGCTTCGGCATGTCCATCCTAACCTATGCACCCTCCAATGCCGTGTGGTGGGCGACCTACTCGCTGTCGCAGAAGACGATTTGGAGCGGAATTGGTTGCTACCTGTGCGAGTACGGTGTTGGTGTCCAAGAAATCGATGCCGGGGAAGGGGATTCCTCCCTGCAGCCGGGTTACAGGACTGTCATGGTGGTGCAGGGAGTGAGCGCGGCGATGGCCGGTGGCGCTTCCGCCCTTGTGACCATGCCATTGGACACCATCAAGACCAGGATGCAGGTCATGGATGGGGAAGGCGGCGAGCCGATTACGGTGGGGAGGACGGTGAGGAGGCTGATCAAGGAGGGTGGATGGGGAGCGTGTTACAGGGGGCTCGGCCCGAGGTGGGCGTCAATGTCGCTGTCTGCCACCACCATGATCACCACGTACGAGTTCCTCAAGCGGCTCTCCGCCAAGGGGCATGAGAGCAGCCTCCCCTGACGAGACGAATAGATGATGCAAATAGGTGACCTTGCTTTGTTACTTTCATTCCTTTCCAATGCTTGTTTCATCTTTTAGGTGTTGCAAAGAGTTGTTTGTAGATAGTCTTTGTTTGCTCCTCTAATTAAGCTAAGCAAATCAATGCAATCCACTCTTTCAGAATGTTTTCTGTGCTATCAATAGGTTTTGCCTTTTAGCTTCTGAATCTTCACAACGGAGTAATTCATGTATACTGAAAAATTCCTGTCCATCTATATAAACGGCTGGTTCTCCATGCTGCAATGTTTTACTATAAGAAATTAAGAATCATGCTCATTG] [+] EMBL CB643038 [ AGCATGCACTACTACTCGCTGCGAGGTGGCGCGTGCGTCTACCTTGTGGCGGCGTGATACGATACGACGCGTGCGGGGGGAAGGGAAGCCGAGGTTTGACTTGAGTGGTGAGCCGGGCATGGAGGAGAGGCCATAGATCGAAGGGAGGCGCCTCCGCCGCCGAAGGAAGCGGCGGCGGAGAAGGTGGATGGCTCCCCGCAACCCCAGCCCCAGGCGGAGCTGCGGCTGCGGCTCCCGGCGGAGATCGACTGGGACCGGCTCGACAAGTGGAGGTTCTTCGTCCTCGGCGCCGGCCTCTTCTCCGCCGTCTCCACCGCGCTCTACCCCGCCGTCGTCCTCAAGACGCGCCTCCAGGTCGCCCCCTCGCCCGCGCACGCCGCGGCGTCGTCGCTCCCGCCCTCCGCCGCCGCCGCGGCCACCGCCATCCTGCGGAGCGAGGGGCCCCTCGCCTTCTACCGCGGCTTCGCCACCTCCCTCGCGGGCACCGTCCCGGCGCGCGCGCTCTACATGGGCGCGCTCGAGGCCACGCGCTCGGCCGTGGGCCCGACAGCGCTCGCCCTCGGCGCGCCAGAGCCCGTGGCTTCCGCGGCCGCGGGCGCCGCGGCGGGGCTCGCCGCCGCCGTGGCGGCGCATGTGGTGTGGACACCCGTCGACGTCATCAGCCA ] consensusID : consensus_6118#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 513 fasta sequence [GCGGAATTGGTTGCTACCTGTGCGAGTACGGTGTTGGTGTCCAAGAAATCGATGCCGGGGAAGGGGATTCCTCCCTGCAGCCGGGTTACAAGACTGTCATGGTGGTGCAGGGAGTGAGCGCGGCGATGGCCGGTGGCGCTTCCGCCCTTGTGACCATGCCATTGGACACCATCAAGACCAGGATGCAGGTCATGGATGGGGAAGGCGGCGAGCCGATTACGGTGGGGAGGACGGTGAGGAGGCTGATCAAGGAGGGTGGATGGGGAGCGTGTTACAGGGGGCTCGGCCCGAGGTGGGCGTCAATGTGGCTGTCTGCCACCACCATGATCACCACGTACGAGTTCCTCAAGCGGCTCTCCGCCAAGGGGCATGAGAGCAGCCTCCCCTGACGAGACGAATAGATGATGCAAATAGGAAACATTGTGCTGGTTTCCATCAGTGATCAGTCGCCATGATTAGCGCCAGGAAGAAGCCGATAATAGGGTGTCGGACTCCACCTCCTGATGTGCGTGA] [-] EMBL CB643039 [GCGGAATTGGTTGCTACCTGTGCGAGTACGGTGTTGGTGTCCAAGAAATCGATGCCGGGGAAGGGGATTCCTCCCTGCAGCCGGGTTACAAGACTGTCATGGTGGTGCAGGGAGTGAGCGCGGCGATGGCCGGTGGCGCTTCCGCCCTTGTGACCATGCCATTGGACACCATCAAGACCAGGATGCAGGTCATGGATGGGGAAGGCGGCGAGCCGATTACGGTGGGGAGGACGGTGAGGAGGCTGATCAAGGAGGGTGGATGGGGAGCGTGTTACAGGGGGCTCGGCCCGAGGTGGGCGTCAATGTGGCTGTCTGCCACCACCATGATCACCACGTACGAGTTCCTCAAGCGGCTCTCCGCCAAGGGGCATGAGAGCAGCCTCCCCTGACGAGACGAATAGATGATGCAAATAGGAAACATTGTGCTGGTTTCCATCAGTGATCAGTCGCCATGATTAGCGCCAGGAAGAAGCCGATAATAGGGTGTCGGACTCCACCTCCTGATGTGCGTGA] consensusID : consensus_6118#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 326 fasta sequence [ATCAAGGAGGGTGGATGGGNACCGTGTTACAGGGGGCTCGGCCCGAGGTGGCCGTCAATGTCGCTGTCTGCCACCACCATGATCACCACGTACGAGTTCCTCAAGCGGCTCTCCGCCAAGGGGCATGAGAGCAGCCTCCCCTGACGAGACGAATAGATGATGCAAATAGGTGACCTTGCTTTGTTACTTTCATTCCTTTCCAATGCTTGTTTCATCTTTTAGGTGTTGCAAANAGTTGTTTGTAGATAGTCTTTGTTTGCTCCTCTAATTAAGCTAAGCAAATCAATGCAATCCACTCTTTNAGAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C97115 [ATCAAGGAGGGTGGATGGGNACCGTGTTACAGGGGGCTCGGCCCGAGGTGGCCGTCAATGTCGCTGTCTGCCACCACCATGATCACCACGTACGAGTTCCTCAAGCGGCTCTCCGCCAAGGGGCATGAGAGCAGCCTCCCCTGACGAGACGAATAGATGATGCAAATAGGTGACCTTGCTTTGTTACTTTCATTCCTTTCCAATGCTTGTTTCATCTTTTAGGTGTTGCAAANAGTTGTTTGTAGATAGTCTTTGTTTGCTCCTCTAATTAAGCTAAGCAAATCAATGCAATCCACTCTTTNAGAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6118#0 TCTTCCTCGCCCCCACCCCAAAAACCCTAGCCGCCGCCACCGCCGCCGCCGCCGCCGTTT 60 consensus_6118#2 ------------------------------------------------------------ consensus_6118#1 ------------------------------------------------------------ consensus_6118#0 GCTCGAGCATGTACTACTACTCGCTGCGAGGTGGCGCGTGCGTCTACCTTGTGGCGGCGT 120 consensus_6118#2 ------------------------------------------------------------ consensus_6118#1 ------------------------------------------------------------ consensus_6118#0 GATACGATACGACGCGTGCGGGGGGAAGGGAAGCCGAGGTTTGACTTGAGTGGTGAGCCG 180 consensus_6118#2 ------------------------------------------------------------ consensus_6118#1 ------------------------------------------------------------ consensus_6118#0 GGCATGGAGGAGAGGCCATAGATCGAAGGGAGGCGCCTCCGCCGCCGAAGGAAGCGGCGG 240 consensus_6118#2 ------------------------------------------------------------ consensus_6118#1 ------------------------------------------------------------ consensus_6118#0 CGGAGAAGGTGGATGGCTCCCCGCAACCCCAGCCCCAGGCGGAGCTGCGGCTGCGGCTCC 300 consensus_6118#2 ------------------------------------------------------------ consensus_6118#1 ------------------------------------------------------------ consensus_6118#0 CGGCGGAGATCGACTGGGACCGGCTCGACAAGTGGAGGTTCTTCGTCCTCGGCGCCGGCC 360 consensus_6118#2 ------------------------------------------------------------ consensus_6118#1 ------------------------------------------------------------ consensus_6118#0 TCTTCTCCGCCGTCTCCACCGCGCTCTACCCCGCCGTCGTCCTCAAGACGCGCCTCCAGG 420 consensus_6118#2 ------------------------------------------------------------ consensus_6118#1 ------------------------------------------------------------ consensus_6118#0 TCGCCCCCTCGCCCGCGCACGCCGCGGCGTCGTCGCTCCCGCCCTCCGCCGCCGCCGCGG 480 consensus_6118#2 ------------------------------------------------------------ consensus_6118#1 ------------------------------------------------------------ consensus_6118#0 CCACCGCCATCCTGCGGAGCGAGGGGCCCCTCGCCTTCTACCGCGGCTTCGCCACCTCCC 540 consensus_6118#2 ------------------------------------------------------------ consensus_6118#1 ------------------------------------------------------------ consensus_6118#0 TCGCGGGCACCGTCCCGGCGCGCGCGCTCTACATGGGCGCGCTCGAGGCCACGCGCTCGG 600 consensus_6118#2 ------------------------------------------------------------ consensus_6118#1 ------------------------------------------------------------ consensus_6118#0 CCGTGGGCCCGACAGCGCTCGCCCTCGGCGCGCCAGAGCCCGTGGCTTCCGCGGCCGCGG 660 consensus_6118#2 ------------------------------------------------------------ consensus_6118#1 ------------------------------------------------------------ consensus_6118#0 GCGCCGCGGCGGGGCTCGCCGCCGCCGTGGCGGCGCAGGTGGTGTGGACGCCCGTCGACG 720 consensus_6118#2 ------------------------------------------------------------ consensus_6118#1 ------------------------------------------------------------ consensus_6118#0 TCATCAGCCAGCGCCTCATGGTGCAGGGGAACCCGTGCCCGGCCTCCCGCTACCGCGGCG 780 consensus_6118#2 ------------------------------------------------------------ consensus_6118#1 ------------------------------------------------------------ consensus_6118#0 GCCTCGACGCCTTCCGCAAGATCGTGGCCGCCGACGGCCTCCGCGGCCTGTACCGCGGCT 840 consensus_6118#2 ------------------------------------------------------------ consensus_6118#1 ------------------------------------------------------------ consensus_6118#0 TCGGCATGTCCATCCTAACCTATGCACCCTCCAATGCCGTGTGGTGGGCGACCTACTCGC 900 consensus_6118#2 ------------------------------------------------------------ consensus_6118#1 ------------------------------------------------------------ consensus_6118#0 TGTCGCAGAAGACGATTTGGAGCGGAATTGGTTGCTACCTGTGCGAGTACGGTGTTGGTG 960 consensus_6118#2 ------------------------------------------------------------ consensus_6118#1 ---------------------GCGGAATTGGTTGCTACCTGTGCGAGTACGGTGTTGGTG 39 consensus_6118#0 TCCAAGAAATCGATGCCGGGGAAGGGGATTCCTCCCTGCAGCCGGGTTACAGGACTGTCA 1020 consensus_6118#2 ------------------------------------------------------------ consensus_6118#1 TCCAAGAAATCGATGCCGGGGAAGGGGATTCCTCCCTGCAGCCGGGTTACAAGACTGTCA 99 consensus_6118#0 TGGTGGTGCAGGGAGTGAGCGCGGCGATGGCCGGTGGCGCTTCCGCCCTTGTGACCATGC 1080 consensus_6118#2 ------------------------------------------------------------ consensus_6118#1 TGGTGGTGCAGGGAGTGAGCGCGGCGATGGCCGGTGGCGCTTCCGCCCTTGTGACCATGC 159 consensus_6118#0 CATTGGACACCATCAAGACCAGGATGCAGGTCATGGATGGGGAAGGCGGCGAGCCGATTA 1140 consensus_6118#2 ------------------------------------------------------------ consensus_6118#1 CATTGGACACCATCAAGACCAGGATGCAGGTCATGGATGGGGAAGGCGGCGAGCCGATTA 219 consensus_6118#0 CGGTGGGGAGGACGGTGAGGAGGCTGATCAAGGAGGGTGGATGGGGAGCGTGTTACAGGG 1200 consensus_6118#2 --------------------------ATCAAGGAGGGTGGATGGGNACCGTGTTACAGGG 34 consensus_6118#1 CGGTGGGGAGGACGGTGAGGAGGCTGATCAAGGAGGGTGGATGGGGAGCGTGTTACAGGG 279 ******************* * ************ consensus_6118#0 GGCTCGGCCCGAGGTGGGCGTCAATGTCGCTGTCTGCCACCACCATGATCACCACGTACG 1260 consensus_6118#2 GGCTCGGCCCGAGGTGGCCGTCAATGTCGCTGTCTGCCACCACCATGATCACCACGTACG 94 consensus_6118#1 GGCTCGGCCCGAGGTGGGCGTCAATGTGGCTGTCTGCCACCACCATGATCACCACGTACG 339 ***************** ********* ******************************** consensus_6118#0 AGTTCCTCAAGCGGCTCTCCGCCAAGGGGCATGAGAGCAGCCTCCCCTGACGAGACGAAT 1320 consensus_6118#2 AGTTCCTCAAGCGGCTCTCCGCCAAGGGGCATGAGAGCAGCCTCCCCTGACGAGACGAAT 154 consensus_6118#1 AGTTCCTCAAGCGGCTCTCCGCCAAGGGGCATGAGAGCAGCCTCCCCTGACGAGACGAAT 399 ************************************************************ consensus_6118#0 AGATGATGCAAATAGGTGACCTTGCTTTGTTACTTTCATTCCTTTCCAATGCTTGTTTCA 1380 consensus_6118#2 AGATGATGCAAATAGGTGACCTTGCTTTGTTACTTTCATTCCTTTCCAATGCTTGTTTCA 214 consensus_6118#1 AGATGATGCAAATAGGAAACATTGTGCTGGT--TTCCATCAGTGATCAGTCGCCATGA-- 455 **************** ** *** ** * ** *** * ** * * consensus_6118#0 TCTTTTAGGTGTTGCAAAGAGTTGTTTGTAGATAGTCTTTGTTTGCTCCTCTAATTAAGC 1440 consensus_6118#2 TCTTTTAGGTGTTGCAAANAGTTGTTTGTAGATAGTCTTTGTTTGCTCCTCTAATTAAGC 274 consensus_6118#1 ----TTAGCGCCAGGAAGAAGCCGATAATAGGGTGTCGGACTCCACCTCCTGATGTGCGT 511 **** * ** ** * * *** *** * * * * * * consensus_6118#0 TAAGCAAATCAATGCAATCCACTCTTTCAGAATGTTTTCTGTGCTATCAATAGGTTTTGC 1500 consensus_6118#2 TAAGCAAATCAATGCAATCCACTCTTTNAGAAAAAAAAAAAAAAAAAAAAAA-------- 326 consensus_6118#1 GA---------------------------------------------------------- 513 * consensus_6118#0 CTTTTAGCTTCTGAATCTTCACAACGGAGTAATTCATGTATACTGAAAAATTCCTGTCCA 1560 consensus_6118#2 ------------------------------------------------------------ consensus_6118#1 ------------------------------------------------------------ consensus_6118#0 TCTATATAAACGGCTGGTTCTCCATGCTGCAATGTTTTACTATAAGAAATTAAGAATCAT 1620 consensus_6118#2 ------------------------------------------------------------ consensus_6118#1 ------------------------------------------------------------ consensus_6118#0 GCTCATTG 1628 consensus_6118#2 -------- consensus_6118#1 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||