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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6118#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1628 fasta sequence
[TCTTCCTCGCCCCCACCCCAAAAACCCTAGCCGCCGCCACCGCCGCCGCCGCCGCCGTTTGCTCGAGCATGTACTACTACTCGCTGCGAGGTGGCGCGTGCGTCTACCTTGTGGCGGCGTGATACGATACGACGCGTGCGGGGGGAAGGGAAGCCGAGGTTTGACTTGAGTGGTGAGCCGGGCATGGAGGAGAGGCCATAGATCGAAGGGAGGCGCCTCCGCCGCCGAAGGAAGCGGCGGCGGAGAAGGTGGATGGCTCCCCGCAACCCCAGCCCCAGGCGGAGCTGCGGCTGCGGCTCCCGGCGGAGATCGACTGGGACCGGCTCGACAAGTGGAGGTTCTTCGTCCTCGGCGCCGGCCTCTTCTCCGCCGTCTCCACCGCGCTCTACCCCGCCGTCGTCCTCAAGACGCGCCTCCAGGTCGCCCCCTCGCCCGCGCACGCCGCGGCGTCGTCGCTCCCGCCCTCCGCCGCCGCCGCGGCCACCGCCATCCTGCGGAGCGAGGGGCCCCTCGCCTTCTACCGCGGCTTCGCCACCTCCCTCGCGGGCACCGTCCCGGCGCGCGCGCTCTACATGGGCGCGCTCGAGGCCACGCGCTCGGCCGTGGGCCCGACAGCGCTCGCCCTCGGCGCGCCAGAGCCCGTGGCTTCCGCGGCCGCGGGCGCCGCGGCGGGGCTCGCCGCCGCCGTGGCGGCGCAGGTGGTGTGGACGCCCGTCGACGTCATCAGCCAGCGCCTCATGGTGCAGGGGAACCCGTGCCCGGCCTCCCGCTACCGCGGCGGCCTCGACGCCTTCCGCAAGATCGTGGCCGCCGACGGCCTCCGCGGCCTGTACCGCGGCTTCGGCATGTCCATCCTAACCTATGCACCCTCCAATGCCGTGTGGTGGGCGACCTACTCGCTGTCGCAGAAGACGATTTGGAGCGGAATTGGTTGCTACCTGTGCGAGTACGGTGTTGGTGTCCAAGAAATCGATGCCGGGGAAGGGGATTCCTCCCTGCAGCCGGGTTACAGGACTGTCATGGTGGTGCAGGGAGTGAGCGCGGCGATGGCCGGTGGCGCTTCCGCCCTTGTGACCATGCCATTGGACACCATCAAGACCAGGATGCAGGTCATGGATGGGGAAGGCGGCGAGCCGATTACGGTGGGGAGGACGGTGAGGAGGCTGATCAAGGAGGGTGGATGGGGAGCGTGTTACAGGGGGCTCGGCCCGAGGTGGGCGTCAATGTCGCTGTCTGCCACCACCATGATCACCACGTACGAGTTCCTCAAGCGGCTCTCCGCCAAGGGGCATGAGAGCAGCCTCCCCTGACGAGACGAATAGATGATGCAAATAGGTGACCTTGCTTTGTTACTTTCATTCCTTTCCAATGCTTGTTTCATCTTTTAGGTGTTGCAAAGAGTTGTTTGTAGATAGTCTTTGTTTGCTCCTCTAATTAAGCTAAGCAAATCAATGCAATCCACTCTTTCAGAATGTTTTCTGTGCTATCAATAGGTTTTGCCTTTTAGCTTCTGAATCTTCACAACGGAGTAATTCATGTATACTGAAAAATTCCTGTCCATCTATATAAACGGCTGGTTCTCCATGCTGCAATGTTTTACTATAAGAAATTAAGAATCATGCTCATTG]
[+] EMBL AK120833 [TCTTCCTCGCCCCCACCCCAAAAACCCTAGCCGCCGCCACCGCCGCCGCCGCCGCCGTTTGCTCGAGCATGTACTACTACTCGCTGCGAGGTGGCGCGTGCGTCTACCTTGTGGCGGCGTGATACGATACGACGCGTGCGGGGGGAAGGGAAGCCGAGGTTTGACTTGAGTGGTGAGCCGGGCATGGAGGAGAGGCCATAGATCGAAGGGAGGCGCCTCCGCCGCCGAAGGAAGCGGCGGCGGAGAAGGTGGATGGCTCCCCGCAACCCCAGCCCCAGGCGGAGCTGCGGCTGCGGCTCCCGGCGGAGATCGACTGGGACCGGCTCGACAAGTGGAGGTTCTTCGTCCTCGGCGCCGGCCTCTTCTCCGCCGTCTCCACCGCGCTCTACCCCGCCGTCGTCCTCAAGACGCGCCTCCAGGTCGCCCCCTCGCCCGCGCACGCCGCGGCGTCGTCGCTCCCGCCCTCCGCCGCCGCCGCGGCCACCGCCATCCTGCGGAGCGAGGGGCCCCTCGCCTTCTACCGCGGCTTCGCCACCTCCCTCGCGGGCACCGTCCCGGCGCGCGCGCTCTACATGGGCGCGCTCGAGGCCACGCGCTCGGCCGTGGGCCCGACAGCGCTCGCCCTCGGCGCGCCAGAGCCCGTGGCTTCCGCGGCCGCGGGCGCCGCGGCGGGGCTCGCCGCCGCCGTGGCGGCGCAGGTGGTGTGGACGCCCGTCGACGTCATCAGCCAGCGCCTCATGGTGCAGGGGAACCCGTGCCCGGCCTCCCGCTACCGCGGCGGCCTCGACGCCTTCCGCAAGATCGTGGCCGCCGACGGCCTCCGCGGCCTGTACCGCGGCTTCGGCATGTCCATCCTAACCTATGCACCCTCCAATGCCGTGTGGTGGGCGACCTACTCGCTGTCGCAGAAGACGATTTGGAGCGGAATTGGTTGCTACCTGTGCGAGTACGGTGTTGGTGTCCAAGAAATCGATGCCGGGGAAGGGGATTCCTCCCTGCAGCCGGGTTACAGGACTGTCATGGTGGTGCAGGGAGTGAGCGCGGCGATGGCCGGTGGCGCTTCCGCCCTTGTGACCATGCCATTGGACACCATCAAGACCAGGATGCAGGTCATGGATGGGGAAGGCGGCGAGCCGATTACGGTGGGGAGGACGGTGAGGAGGCTGATCAAGGAGGGTGGATGGGGAGCGTGTTACAGGGGGCTCGGCCCGAGGTGGGCGTCAATGTCGCTGTCTGCCACCACCATGATCACCACGTACGAGTTCCTCAAGCGGCTCTCCGCCAAGGGGCATGAGAGCAGCCTCCCCTGACGAGACGAATAGATGATGCAAATAGGTGACCTTGCTTTGTTACTTTCATTCCTTTCCAATGCTTGTTTCATCTTTTAGGTGTTGCAAAGAGTTGTTTGTAGATAGTCTTTGTTTGCTCCTCTAATTAAGCTAAGCAAATCAATGCAATCCACTCTTTCAGAATGTTTTCTGTGCTATCAATAGGTTTTGCCTTTTAGCTTCTGAATCTTCACAACGGAGTAATTCATGTATACTGAAAAATTCCTGTCCATCTATATAAACGGCTGGTTCTCCATGCTGCAATGTTTTACTATAAGAAATTAAGAATCATGCTCATTG]
[+] EMBL CB643038 [ AGCATGCACTACTACTCGCTGCGAGGTGGCGCGTGCGTCTACCTTGTGGCGGCGTGATACGATACGACGCGTGCGGGGGGAAGGGAAGCCGAGGTTTGACTTGAGTGGTGAGCCGGGCATGGAGGAGAGGCCATAGATCGAAGGGAGGCGCCTCCGCCGCCGAAGGAAGCGGCGGCGGAGAAGGTGGATGGCTCCCCGCAACCCCAGCCCCAGGCGGAGCTGCGGCTGCGGCTCCCGGCGGAGATCGACTGGGACCGGCTCGACAAGTGGAGGTTCTTCGTCCTCGGCGCCGGCCTCTTCTCCGCCGTCTCCACCGCGCTCTACCCCGCCGTCGTCCTCAAGACGCGCCTCCAGGTCGCCCCCTCGCCCGCGCACGCCGCGGCGTCGTCGCTCCCGCCCTCCGCCGCCGCCGCGGCCACCGCCATCCTGCGGAGCGAGGGGCCCCTCGCCTTCTACCGCGGCTTCGCCACCTCCCTCGCGGGCACCGTCCCGGCGCGCGCGCTCTACATGGGCGCGCTCGAGGCCACGCGCTCGGCCGTGGGCCCGACAGCGCTCGCCCTCGGCGCGCCAGAGCCCGTGGCTTCCGCGGCCGCGGGCGCCGCGGCGGGGCTCGCCGCCGCCGTGGCGGCGCATGTGGTGTGGACACCCGTCGACGTCATCAGCCA ]
consensusID : consensus_6118#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 513 fasta sequence
[GCGGAATTGGTTGCTACCTGTGCGAGTACGGTGTTGGTGTCCAAGAAATCGATGCCGGGGAAGGGGATTCCTCCCTGCAGCCGGGTTACAAGACTGTCATGGTGGTGCAGGGAGTGAGCGCGGCGATGGCCGGTGGCGCTTCCGCCCTTGTGACCATGCCATTGGACACCATCAAGACCAGGATGCAGGTCATGGATGGGGAAGGCGGCGAGCCGATTACGGTGGGGAGGACGGTGAGGAGGCTGATCAAGGAGGGTGGATGGGGAGCGTGTTACAGGGGGCTCGGCCCGAGGTGGGCGTCAATGTGGCTGTCTGCCACCACCATGATCACCACGTACGAGTTCCTCAAGCGGCTCTCCGCCAAGGGGCATGAGAGCAGCCTCCCCTGACGAGACGAATAGATGATGCAAATAGGAAACATTGTGCTGGTTTCCATCAGTGATCAGTCGCCATGATTAGCGCCAGGAAGAAGCCGATAATAGGGTGTCGGACTCCACCTCCTGATGTGCGTGA]
[-] EMBL CB643039 [GCGGAATTGGTTGCTACCTGTGCGAGTACGGTGTTGGTGTCCAAGAAATCGATGCCGGGGAAGGGGATTCCTCCCTGCAGCCGGGTTACAAGACTGTCATGGTGGTGCAGGGAGTGAGCGCGGCGATGGCCGGTGGCGCTTCCGCCCTTGTGACCATGCCATTGGACACCATCAAGACCAGGATGCAGGTCATGGATGGGGAAGGCGGCGAGCCGATTACGGTGGGGAGGACGGTGAGGAGGCTGATCAAGGAGGGTGGATGGGGAGCGTGTTACAGGGGGCTCGGCCCGAGGTGGGCGTCAATGTGGCTGTCTGCCACCACCATGATCACCACGTACGAGTTCCTCAAGCGGCTCTCCGCCAAGGGGCATGAGAGCAGCCTCCCCTGACGAGACGAATAGATGATGCAAATAGGAAACATTGTGCTGGTTTCCATCAGTGATCAGTCGCCATGATTAGCGCCAGGAAGAAGCCGATAATAGGGTGTCGGACTCCACCTCCTGATGTGCGTGA]
consensusID : consensus_6118#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 326 fasta sequence
[ATCAAGGAGGGTGGATGGGNACCGTGTTACAGGGGGCTCGGCCCGAGGTGGCCGTCAATGTCGCTGTCTGCCACCACCATGATCACCACGTACGAGTTCCTCAAGCGGCTCTCCGCCAAGGGGCATGAGAGCAGCCTCCCCTGACGAGACGAATAGATGATGCAAATAGGTGACCTTGCTTTGTTACTTTCATTCCTTTCCAATGCTTGTTTCATCTTTTAGGTGTTGCAAANAGTTGTTTGTAGATAGTCTTTGTTTGCTCCTCTAATTAAGCTAAGCAAATCAATGCAATCCACTCTTTNAGAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL C97115 [ATCAAGGAGGGTGGATGGGNACCGTGTTACAGGGGGCTCGGCCCGAGGTGGCCGTCAATGTCGCTGTCTGCCACCACCATGATCACCACGTACGAGTTCCTCAAGCGGCTCTCCGCCAAGGGGCATGAGAGCAGCCTCCCCTGACGAGACGAATAGATGATGCAAATAGGTGACCTTGCTTTGTTACTTTCATTCCTTTCCAATGCTTGTTTCATCTTTTAGGTGTTGCAAANAGTTGTTTGTAGATAGTCTTTGTTTGCTCCTCTAATTAAGCTAAGCAAATCAATGCAATCCACTCTTTNAGAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6118#0 TCTTCCTCGCCCCCACCCCAAAAACCCTAGCCGCCGCCACCGCCGCCGCCGCCGCCGTTT 60
consensus_6118#2 ------------------------------------------------------------
consensus_6118#1 ------------------------------------------------------------
consensus_6118#0 GCTCGAGCATGTACTACTACTCGCTGCGAGGTGGCGCGTGCGTCTACCTTGTGGCGGCGT 120
consensus_6118#2 ------------------------------------------------------------
consensus_6118#1 ------------------------------------------------------------
consensus_6118#0 GATACGATACGACGCGTGCGGGGGGAAGGGAAGCCGAGGTTTGACTTGAGTGGTGAGCCG 180
consensus_6118#2 ------------------------------------------------------------
consensus_6118#1 ------------------------------------------------------------
consensus_6118#0 GGCATGGAGGAGAGGCCATAGATCGAAGGGAGGCGCCTCCGCCGCCGAAGGAAGCGGCGG 240
consensus_6118#2 ------------------------------------------------------------
consensus_6118#1 ------------------------------------------------------------
consensus_6118#0 CGGAGAAGGTGGATGGCTCCCCGCAACCCCAGCCCCAGGCGGAGCTGCGGCTGCGGCTCC 300
consensus_6118#2 ------------------------------------------------------------
consensus_6118#1 ------------------------------------------------------------
consensus_6118#0 CGGCGGAGATCGACTGGGACCGGCTCGACAAGTGGAGGTTCTTCGTCCTCGGCGCCGGCC 360
consensus_6118#2 ------------------------------------------------------------
consensus_6118#1 ------------------------------------------------------------
consensus_6118#0 TCTTCTCCGCCGTCTCCACCGCGCTCTACCCCGCCGTCGTCCTCAAGACGCGCCTCCAGG 420
consensus_6118#2 ------------------------------------------------------------
consensus_6118#1 ------------------------------------------------------------
consensus_6118#0 TCGCCCCCTCGCCCGCGCACGCCGCGGCGTCGTCGCTCCCGCCCTCCGCCGCCGCCGCGG 480
consensus_6118#2 ------------------------------------------------------------
consensus_6118#1 ------------------------------------------------------------
consensus_6118#0 CCACCGCCATCCTGCGGAGCGAGGGGCCCCTCGCCTTCTACCGCGGCTTCGCCACCTCCC 540
consensus_6118#2 ------------------------------------------------------------
consensus_6118#1 ------------------------------------------------------------
consensus_6118#0 TCGCGGGCACCGTCCCGGCGCGCGCGCTCTACATGGGCGCGCTCGAGGCCACGCGCTCGG 600
consensus_6118#2 ------------------------------------------------------------
consensus_6118#1 ------------------------------------------------------------
consensus_6118#0 CCGTGGGCCCGACAGCGCTCGCCCTCGGCGCGCCAGAGCCCGTGGCTTCCGCGGCCGCGG 660
consensus_6118#2 ------------------------------------------------------------
consensus_6118#1 ------------------------------------------------------------
consensus_6118#0 GCGCCGCGGCGGGGCTCGCCGCCGCCGTGGCGGCGCAGGTGGTGTGGACGCCCGTCGACG 720
consensus_6118#2 ------------------------------------------------------------
consensus_6118#1 ------------------------------------------------------------
consensus_6118#0 TCATCAGCCAGCGCCTCATGGTGCAGGGGAACCCGTGCCCGGCCTCCCGCTACCGCGGCG 780
consensus_6118#2 ------------------------------------------------------------
consensus_6118#1 ------------------------------------------------------------
consensus_6118#0 GCCTCGACGCCTTCCGCAAGATCGTGGCCGCCGACGGCCTCCGCGGCCTGTACCGCGGCT 840
consensus_6118#2 ------------------------------------------------------------
consensus_6118#1 ------------------------------------------------------------
consensus_6118#0 TCGGCATGTCCATCCTAACCTATGCACCCTCCAATGCCGTGTGGTGGGCGACCTACTCGC 900
consensus_6118#2 ------------------------------------------------------------
consensus_6118#1 ------------------------------------------------------------
consensus_6118#0 TGTCGCAGAAGACGATTTGGAGCGGAATTGGTTGCTACCTGTGCGAGTACGGTGTTGGTG 960
consensus_6118#2 ------------------------------------------------------------
consensus_6118#1 ---------------------GCGGAATTGGTTGCTACCTGTGCGAGTACGGTGTTGGTG 39
consensus_6118#0 TCCAAGAAATCGATGCCGGGGAAGGGGATTCCTCCCTGCAGCCGGGTTACAGGACTGTCA 1020
consensus_6118#2 ------------------------------------------------------------
consensus_6118#1 TCCAAGAAATCGATGCCGGGGAAGGGGATTCCTCCCTGCAGCCGGGTTACAAGACTGTCA 99
consensus_6118#0 TGGTGGTGCAGGGAGTGAGCGCGGCGATGGCCGGTGGCGCTTCCGCCCTTGTGACCATGC 1080
consensus_6118#2 ------------------------------------------------------------
consensus_6118#1 TGGTGGTGCAGGGAGTGAGCGCGGCGATGGCCGGTGGCGCTTCCGCCCTTGTGACCATGC 159
consensus_6118#0 CATTGGACACCATCAAGACCAGGATGCAGGTCATGGATGGGGAAGGCGGCGAGCCGATTA 1140
consensus_6118#2 ------------------------------------------------------------
consensus_6118#1 CATTGGACACCATCAAGACCAGGATGCAGGTCATGGATGGGGAAGGCGGCGAGCCGATTA 219
consensus_6118#0 CGGTGGGGAGGACGGTGAGGAGGCTGATCAAGGAGGGTGGATGGGGAGCGTGTTACAGGG 1200
consensus_6118#2 --------------------------ATCAAGGAGGGTGGATGGGNACCGTGTTACAGGG 34
consensus_6118#1 CGGTGGGGAGGACGGTGAGGAGGCTGATCAAGGAGGGTGGATGGGGAGCGTGTTACAGGG 279
******************* * ************
consensus_6118#0 GGCTCGGCCCGAGGTGGGCGTCAATGTCGCTGTCTGCCACCACCATGATCACCACGTACG 1260
consensus_6118#2 GGCTCGGCCCGAGGTGGCCGTCAATGTCGCTGTCTGCCACCACCATGATCACCACGTACG 94
consensus_6118#1 GGCTCGGCCCGAGGTGGGCGTCAATGTGGCTGTCTGCCACCACCATGATCACCACGTACG 339
***************** ********* ********************************
consensus_6118#0 AGTTCCTCAAGCGGCTCTCCGCCAAGGGGCATGAGAGCAGCCTCCCCTGACGAGACGAAT 1320
consensus_6118#2 AGTTCCTCAAGCGGCTCTCCGCCAAGGGGCATGAGAGCAGCCTCCCCTGACGAGACGAAT 154
consensus_6118#1 AGTTCCTCAAGCGGCTCTCCGCCAAGGGGCATGAGAGCAGCCTCCCCTGACGAGACGAAT 399
************************************************************
consensus_6118#0 AGATGATGCAAATAGGTGACCTTGCTTTGTTACTTTCATTCCTTTCCAATGCTTGTTTCA 1380
consensus_6118#2 AGATGATGCAAATAGGTGACCTTGCTTTGTTACTTTCATTCCTTTCCAATGCTTGTTTCA 214
consensus_6118#1 AGATGATGCAAATAGGAAACATTGTGCTGGT--TTCCATCAGTGATCAGTCGCCATGA-- 455
**************** ** *** ** * ** *** * ** * *
consensus_6118#0 TCTTTTAGGTGTTGCAAAGAGTTGTTTGTAGATAGTCTTTGTTTGCTCCTCTAATTAAGC 1440
consensus_6118#2 TCTTTTAGGTGTTGCAAANAGTTGTTTGTAGATAGTCTTTGTTTGCTCCTCTAATTAAGC 274
consensus_6118#1 ----TTAGCGCCAGGAAGAAGCCGATAATAGGGTGTCGGACTCCACCTCCTGATGTGCGT 511
**** * ** ** * * *** *** * * * * * *
consensus_6118#0 TAAGCAAATCAATGCAATCCACTCTTTCAGAATGTTTTCTGTGCTATCAATAGGTTTTGC 1500
consensus_6118#2 TAAGCAAATCAATGCAATCCACTCTTTNAGAAAAAAAAAAAAAAAAAAAAAA-------- 326
consensus_6118#1 GA---------------------------------------------------------- 513
*
consensus_6118#0 CTTTTAGCTTCTGAATCTTCACAACGGAGTAATTCATGTATACTGAAAAATTCCTGTCCA 1560
consensus_6118#2 ------------------------------------------------------------
consensus_6118#1 ------------------------------------------------------------
consensus_6118#0 TCTATATAAACGGCTGGTTCTCCATGCTGCAATGTTTTACTATAAGAAATTAAGAATCAT 1620
consensus_6118#2 ------------------------------------------------------------
consensus_6118#1 ------------------------------------------------------------
consensus_6118#0 GCTCATTG 1628
consensus_6118#2 --------
consensus_6118#1 --------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||