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Oryza sativa
cluster # 6120 cluster # 6120       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6120#0 length = 1367 sequences # 3  
 consensus_6120#1 length = 236 sequences # 1  
consensusID : consensus_6120#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1367
fasta sequence 
                              [CAGCAAGGAGAACACCGTGCACGAGCTGGGTACGGCCGCGGCGAGGGGCCCGTGGGAGCCGGCGAGGCGGCCGAGGCGGAGCTCATCGGGGGGGTCGTCGTCGCCGGAGAACGCCGGGAGCACCAGAGGATCGGCCGTGCTCAGGGACATGATGACGCGGAGGAAGGAGGAGCCCGAGAAGGAGGAGGCGGCGCACCGCGCGCGCATGCTCGCCGCGCGCTTGCTCCAGTGGCGCTTCGCCAACGCCCGCATGGAGAAGGCCATGGCCCGCGCCACCGCCGCCGCCGAGAACAAGCTGTTCTACACGTGGCTGCGGGTGGCGGAGCTCCGGAACATCCAGGCGGCGAAGCGGATCGTGGCGCAGCGGCGGCGGCAGAAGCTGAAGCTGGCGAGGCTGCTCCGGCCGCAGCTCTCGCTGCTCGCGTCGTGGGACTCCCTCGCCAAGCCGCACGCCGACGCCGTCGACGACCTCGGCGCCGTCCTCGCCGCCGCCTGCACCGCGCTCCCCTTAGCCGACGGCGCCCAAGGCGACATGGAGAGCTTGCACGAAGCCATGTTCGCGTGCGTGGGCACGGTGAACGACATCGAAGCCAACGCCGACATGTTCTTCGCCACGGCTGGGGTGACGAGCAGCACGCTGGAAGAACTGTCGACGACGATAAAGCAGGAGGTGGAGGGCCTGCAGGAAGCCATGAAGCTGGCAAGGATTGTCACTAGCTTGCAGGTGCAGGAAGTGAGCCTCCGGGCAAACTTGATTCAGATTCAGGCAAAGCAGAAGGTTGACATGGGAGCATCTGTCCCGGCGATTGCAACTTCTGGTTGGTGTTTCTGATCATCAAAGTACACGGAGATGGAGCAGAGTGTCAATCACTCGCCCACTTATATAAATTAAGATGCAAAGAGTACTAATGCTAGTACCAGCGTCACGGACTGACCGGTGATCTGAGCCGACATTACTGATGTTTTTATGTATATGTTCGTGCCTGAAACAAGTAAATTAAAACAAAAAATTAGACGATGACCAAGAAATTAAAGATACATGGTCCCCTGGTTGGCCGGTCGCATTACTTTCCCAGGTAAATGTTCAGTTTGTTGGAAGGGCACTAATTTGTTGGTCTTTTCATGTTCATGAATGTTAAGTTGATGGATGGATGTAATTCGGTTTGATTAACAGTGTATATATGTATCTTACGTATATTTAAGGGCGTTGGTGTTCATGTTGGTGTGTAGAATTGAATATCACAGTTTGTGGATAGAGATTGAGTTATTGAGGTGTATGCAATATGCATATTCAGTGTTCACAAACTGTATATCAATTATTCCTTCAAGGGCTTGTCCTTTGAGTTACCCAAGAGTCAACAATGATA]

[+] EMBL AK120846             [CAGCAAGGAGAACACCGTGCACGAGCTGGGTACGGCCGCGGCGAGGGGCCCGTGGGAGCCGGCGAGGCGGCCGAGGCGGAGCTCATCGGGGGGGTCGTCGTCGCCGGAGAACGCCGGGAGCACCAGAGGATCGGCCGTGCTCAGGGACATGATGACGCGGAGGAAGGAGGAGCCCGAGAAGGAGGAGGCGGCGCACCGCGCGCGCATGCTCGCCGCGCGCTTGCTCCAGTGGCGCTTCGCCAACGCCCGCATGGAGAAGGCCATGGCCCGCGCCACCGCCGCCGCCGAGAACAAGCTGTTCTACACGTGGCTGCGGGTGGCGGAGCTCCGGAACATCCAGGCGGCGAAGCGGATCGTGGCGCAGCGGCGGCGGCAGAAGCTGAAGCTGACGAGGCTGCTCCGGCCGCAGCTCTCGCTGCTCGCGTCGTGGGACTCCCTCGCCAAGCCGCACGCCGACGCCGTCGACGACCTCGGCGCCGTCCTCGCCGCCGCCTGCACCGCGCTCCCCTTAGCCGACGGCGCCCAAGGCGACATGGAGAGCTTGCACGAAGCCATGTTCGCGTGCGTGGGCACGGTGAACGACATCGAAGCCAACGCCGACATGTTCTTCGCCACGGCTGGGGTGACGAGCAGCACGCTGGAAGAACTGTCGACGACGATAAAGCAGGAGGTGGAGGGCCTGCAGGAAGCCATGAAGCTGGCAAGGATTGTCACTAGCTTGCAGGTGCAGGAAGTGAGCCTCCGGGCAAACTTGATTCAGATTCAGGCAAAGCAGAAGGTTGACATGGGAGCATCTGTCCCGGCGATTGCAACTTCTGGTTGGTGTTTCTGATCATCAAAGTACACGGAGATGGAGCAGAGTGTCAATCACTCGCCCACTTATATAAATTAAGATGCAAAGAGTACTAATGCTAGTACCAGCGTCACGGACTGACCGGTGATCTGAGCCGACATTACTGATGTTTTTATGTATATGTTCGTGCCTGAAACAAGTAAATTAAAACAAAAAATTAGACGATGACCAAGAAATTAAAGATACATGGTCCCCTGGTTGGCCGGTCGCATTACTTTCCCAGGTAAATGTTCAGTTTGTTGGAAGGGCACTAATTTGTTGGTCTTTTCATGTTCATGAATGTTAAGTTGATGGATGGATGTAATTCGGTTTGATTAACAGTGTATATATGTATCTTACGTATATTTAAGGGCGTTGGTGTTCATGTTGGTGTGTAGAATTGAATATCACAGTTTGTGGATAGAGATTGAGTTATTGAGGTGTATGCAATATGCATATTCAGTGTTCACAAACTGTATATCAATTATTCCTTCAAGGGCTTGTCCTTTGAGTTACCCAAGA             ]
[+] EMBL AK059811             [                                                                                                                                                                                                                      GCGCGCTTGCTCCAGTGGCGCTTCGCCAACGCCCGCATGGAGAAGGCCATGGCCCGCGCCACCGCCGCCGCCGAGAACAAGCTGTTCTACACGTGGCTGCGGGTGGCGGAGCTCCGGAACATCCAGGCGGCGAAGCGGATCGTGGCGCAGCGGCGGCGGCAGAAGCTGAAGCTGGCGAGGCTGCTCCGGCCGCAGCTCTCGCTGCTCGCGTCGTGGGACTCCCTCGCCAAGCCGCACGCCGACGCCGTCGACGACCTCGGCGCCGTCCTCGCCGCCGCCTGCACCGCGCTCCCCTTAGCCGACGGCGCCCAAGGCGACATGGAGAGCTTGCACGAAGCCATGTTCGCGTGCGTGGGCACGGTGAACGACATCGAAGCCAACGCCGACATGTTCTTCGCCACGGCTGGGGTGACGAGCAGCACGCTGGAAGAACTGTCGACGACGATAAAGCAGGAGGTGGAGGGCCTGCAGGAAGCCATGAAGCTGGCAAGGATTGTCACTAGCTTGCAGGTGCAGGAAGTGAGCCTCCGGGCAAACTTGATTCAGATTCAGGCAAAGCAGAAGGTTGACATGGGAGCATCTGTCCCGGCGATTGCAACTTCTGGTTGGTGTTTCTGATCATCAAAGTACACGGAGATGGAGCAGAGTGTCAATCACTCGCCCACTTATATAAATTAAGATGCAAAGAGTACTAATGCTAGTACCAGCGTCACGGACTGACCGGTGATCTGAGCCGACATTACTGATGTTTTTATGTATATGTTCGTGCCTGAAACAAGTAAATTAAAACAAAAAATTAGACGATGACCAAGAAATTAAAGATACATGGTCCCCTGGTTGGCCGGTCGCATTACTTTCCCAGGTAAATGTTCAGTTTGTTGGAAGGGCACTAATTTGTTGGTCTTTTCATGTTCATGAATGTTAAGTTGATGGATGGATGTAATTCGGTTTGATTAACAGTGTATATATGTATCTTACGTATATTTAAGGGCGTTGGTGTTCATGTTGGTGTGTAGAATTGAATATCACAGTTTGTGGATAGAGATTGAGTTATTGAGGTGTATGCAATATGCATATTCAGTGTTCACAAACTGTATATCAATTATTCCTTCAAGGGCTTGTCCTTTGAGTTACCCAAGAGTCAACAATGATA]
[+] EMBL BE041011             [                                                                                                                                                                                                                                TCCAGTGGCGCTTCGCCAACGCCCGCATGGAGAAGGCCATGGCCCGCGCCACCGCCGCCGCCGAGAACAAGCTGTTCTACACGTGGCTGCGGGTGGCGGAGCTCCGGAACATCCAGGCGGCGAAGCGGATCGTGGCGCAGCGGCGGCGGCAGAAGCTGAAGCTGGCGAGGCTGCTCCGGCCGCAGCTCTCGCTGCTCGCGTCGTGGGACTCCCTCGCCAAGCCGCACGCCGACGCCGTCGACGACCTCGGCGCCGTCCTCGCCGCCGCCTGCACCGCGCTCCCCTTAGCCGACGGCGCCCAAGGCGACATGGAGAGCTTGCACGAAGCCATGTTCGCGTGCGTGGGCACGGTGAACGACATCGAAGCCAACGCCGACATGTTCTTCGCCACGGCTGGGGTGACGAGCAGCACGCTGGAAGAACTGTCGACGACGATAAAGCAGGAGGTGGAGGGCCTGCAGGAAGCCATGAAGCTGGCAAGGATTGTCACTAGCTTGCAGGTGCAGGAAGTGAGCCTCCGGGCAAACTTGATTCAGATTCAGGCAAAGCAGAAGGTTGACATGGGAGCATCTGTCCCGGGGATTGCAACTTCTGGTTGGGGGTTCTGATCATCAAAGTACACGGAGATGGAGCAGAGTGTCAATCACTCGGCCA TTATATAAATTAAGATGCAAAGAGTACTAATGCTAGTACCAGCGTCACGGACTGACCGGTGATCTGAGCCGGC TTTCTGATG TTTTATTGATATGTCCG GCCCTAAACAGGT AATTAA                                                                                                                                                                                                                                                                                                                                                                              ]




>consensus_6120#0
CAGCAAGGAGAACACCGTGCACGAGCTGGGTACGGCCGCGGCGAGGGGCCCGTGGGAGCC
GGCGAGGCGGCCGAGGCGGAGCTCATCGGGGGGGTCGTCGTCGCCGGAGAACGCCGGGAG
CACCAGAGGATCGGCCGTGCTCAGGGACATGATGACGCGGAGGAAGGAGGAGCCCGAGAA
GGAGGAGGCGGCGCACCGCGCGCGCATGCTCGCCGCGCGCTTGCTCCAGTGGCGCTTCGC
CAACGCCCGCATGGAGAAGGCCATGGCCCGCGCCACCGCCGCCGCCGAGAACAAGCTGTT
CTACACGTGGCTGCGGGTGGCGGAGCTCCGGAACATCCAGGCGGCGAAGCGGATCGTGGC
GCAGCGGCGGCGGCAGAAGCTGAAGCTGGCGAGGCTGCTCCGGCCGCAGCTCTCGCTGCT
CGCGTCGTGGGACTCCCTCGCCAAGCCGCACGCCGACGCCGTCGACGACCTCGGCGCCGT
CCTCGCCGCCGCCTGCACCGCGCTCCCCTTAGCCGACGGCGCCCAAGGCGACATGGAGAG
CTTGCACGAAGCCATGTTCGCGTGCGTGGGCACGGTGAACGACATCGAAGCCAACGCCGA
CATGTTCTTCGCCACGGCTGGGGTGACGAGCAGCACGCTGGAAGAACTGTCGACGACGAT
AAAGCAGGAGGTGGAGGGCCTGCAGGAAGCCATGAAGCTGGCAAGGATTGTCACTAGCTT
GCAGGTGCAGGAAGTGAGCCTCCGGGCAAACTTGATTCAGATTCAGGCAAAGCAGAAGGT
TGACATGGGAGCATCTGTCCCGGCGATTGCAACTTCTGGTTGGTGTTTCTGATCATCAAA
GTACACGGAGATGGAGCAGAGTGTCAATCACTCGCCCACTTATATAAATTAAGATGCAAA
GAGTACTAATGCTAGTACCAGCGTCACGGACTGACCGGTGATCTGAGCCGACATTACTGA
TGTTTTTATGTATATGTTCGTGCCTGAAACAAGTAAATTAAAACAAAAAATTAGACGATG
ACCAAGAAATTAAAGATACATGGTCCCCTGGTTGGCCGGTCGCATTACTTTCCCAGGTAA
ATGTTCAGTTTGTTGGAAGGGCACTAATTTGTTGGTCTTTTCATGTTCATGAATGTTAAG
TTGATGGATGGATGTAATTCGGTTTGATTAACAGTGTATATATGTATCTTACGTATATTT
AAGGGCGTTGGTGTTCATGTTGGTGTGTAGAATTGAATATCACAGTTTGTGGATAGAGAT
TGAGTTATTGAGGTGTATGCAATATGCATATTCAGTGTTCACAAACTGTATATCAATTAT
TCCTTCAAGGGCTTGTCCTTTGAGTTACCCAAGAGTCAACAATGATA

consensusID : consensus_6120#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 236
fasta sequence 
                              [AAATTAAAACAAAAAATTAGACGATGACCCAGAAATTAAAGATACATGGTCCCCTGGTTGGCCGGTCGCATTACTTTCCCAGGTAAATGTTCAGTTTGTTGGAAGGGCACTAATTTGTTGGTCTTTTCATGTTCATGAATGTTAAGTTGATGGATGGATGTAATTCGGTTTGATTAACAGTGTATATATGTATCTTACGTATATTTAAGGGCGTTGGTGTTCAAAAAAAAAAAAAA]

[-] EMBL CA759056             [AAATTAAAACAAAAAATTAGACGATGACCCAGAAATTAAAGATACATGGTCCCCTGGTTGGCCGGTCGCATTACTTTCCCAGGTAAATGTTCAGTTTGTTGGAAGGGCACTAATTTGTTGGTCTTTTCATGTTCATGAATGTTAAGTTGATGGATGGATGTAATTCGGTTTGATTAACAGTGTATATATGTATCTTACGTATATTTAAGGGCGTTGGTGTTCAAAAAAAAAAAAAA]




>consensus_6120#1
AAATTAAAACAAAAAATTAGACGATGACCCAGAAATTAAAGATACATGGTCCCCTGGTTG
GCCGGTCGCATTACTTTCCCAGGTAAATGTTCAGTTTGTTGGAAGGGCACTAATTTGTTG
GTCTTTTCATGTTCATGAATGTTAAGTTGATGGATGGATGTAATTCGGTTTGATTAACAG
TGTATATATGTATCTTACGTATATTTAAGGGCGTTGGTGTTCAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6120#0      CAGCAAGGAGAACACCGTGCACGAGCTGGGTACGGCCGCGGCGAGGGGCCCGTGGGAGCC 60
consensus_6120#1      ------------------------------------------------------------
                                                                                  

consensus_6120#0      GGCGAGGCGGCCGAGGCGGAGCTCATCGGGGGGGTCGTCGTCGCCGGAGAACGCCGGGAG 120
consensus_6120#1      ------------------------------------------------------------
                                                                                  

consensus_6120#0      CACCAGAGGATCGGCCGTGCTCAGGGACATGATGACGCGGAGGAAGGAGGAGCCCGAGAA 180
consensus_6120#1      ------------------------------------------------------------
                                                                                  

consensus_6120#0      GGAGGAGGCGGCGCACCGCGCGCGCATGCTCGCCGCGCGCTTGCTCCAGTGGCGCTTCGC 240
consensus_6120#1      ------------------------------------------------------------
                                                                                  

consensus_6120#0      CAACGCCCGCATGGAGAAGGCCATGGCCCGCGCCACCGCCGCCGCCGAGAACAAGCTGTT 300
consensus_6120#1      ------------------------------------------------------------
                                                                                  

consensus_6120#0      CTACACGTGGCTGCGGGTGGCGGAGCTCCGGAACATCCAGGCGGCGAAGCGGATCGTGGC 360
consensus_6120#1      ------------------------------------------------------------
                                                                                  

consensus_6120#0      GCAGCGGCGGCGGCAGAAGCTGAAGCTGGCGAGGCTGCTCCGGCCGCAGCTCTCGCTGCT 420
consensus_6120#1      ------------------------------------------------------------
                                                                                  

consensus_6120#0      CGCGTCGTGGGACTCCCTCGCCAAGCCGCACGCCGACGCCGTCGACGACCTCGGCGCCGT 480
consensus_6120#1      ------------------------------------------------------------
                                                                                  

consensus_6120#0      CCTCGCCGCCGCCTGCACCGCGCTCCCCTTAGCCGACGGCGCCCAAGGCGACATGGAGAG 540
consensus_6120#1      ------------------------------------------------------------
                                                                                  

consensus_6120#0      CTTGCACGAAGCCATGTTCGCGTGCGTGGGCACGGTGAACGACATCGAAGCCAACGCCGA 600
consensus_6120#1      ------------------------------------------------------------
                                                                                  

consensus_6120#0      CATGTTCTTCGCCACGGCTGGGGTGACGAGCAGCACGCTGGAAGAACTGTCGACGACGAT 660
consensus_6120#1      ------------------------------------------------------------
                                                                                  

consensus_6120#0      AAAGCAGGAGGTGGAGGGCCTGCAGGAAGCCATGAAGCTGGCAAGGATTGTCACTAGCTT 720
consensus_6120#1      ------------------------------------------------------------
                                                                                  

consensus_6120#0      GCAGGTGCAGGAAGTGAGCCTCCGGGCAAACTTGATTCAGATTCAGGCAAAGCAGAAGGT 780
consensus_6120#1      ------------------------------------------------------------
                                                                                  

consensus_6120#0      TGACATGGGAGCATCTGTCCCGGCGATTGCAACTTCTGGTTGGTGTTTCTGATCATCAAA 840
consensus_6120#1      ------------------------------------------------------------
                                                                                  

consensus_6120#0      GTACACGGAGATGGAGCAGAGTGTCAATCACTCGCCCACTTATATAAATTAAGATGCAAA 900
consensus_6120#1      ------------------------------------------------------------
                                                                                  

consensus_6120#0      GAGTACTAATGCTAGTACCAGCGTCACGGACTGACCGGTGATCTGAGCCGACATTACTGA 960
consensus_6120#1      ------------------------------------------------------------
                                                                                  

consensus_6120#0      TGTTTTTATGTATATGTTCGTGCCTGAAACAAGTAAATTAAAACAAAAAATTAGACGATG 1020
consensus_6120#1      ----------------------------------AAATTAAAACAAAAAATTAGACGATG 26
                                                        **************************

consensus_6120#0      ACCAAGAAATTAAAGATACATGGTCCCCTGGTTGGCCGGTCGCATTACTTTCCCAGGTAA 1080
consensus_6120#1      ACCCAGAAATTAAAGATACATGGTCCCCTGGTTGGCCGGTCGCATTACTTTCCCAGGTAA 86
                      *** ********************************************************

consensus_6120#0      ATGTTCAGTTTGTTGGAAGGGCACTAATTTGTTGGTCTTTTCATGTTCATGAATGTTAAG 1140
consensus_6120#1      ATGTTCAGTTTGTTGGAAGGGCACTAATTTGTTGGTCTTTTCATGTTCATGAATGTTAAG 146
                      ************************************************************

consensus_6120#0      TTGATGGATGGATGTAATTCGGTTTGATTAACAGTGTATATATGTATCTTACGTATATTT 1200
consensus_6120#1      TTGATGGATGGATGTAATTCGGTTTGATTAACAGTGTATATATGTATCTTACGTATATTT 206
                      ************************************************************

consensus_6120#0      AAGGGCGTTGGTGTTCATGTTGGTGTGTAGAATTGAATATCACAGTTTGTGGATAGAGAT 1260
consensus_6120#1      AAGGGCGTTGGTGTTCAAAAAAAAAAAAAA------------------------------ 236
                      *****************           *                               

consensus_6120#0      TGAGTTATTGAGGTGTATGCAATATGCATATTCAGTGTTCACAAACTGTATATCAATTAT 1320
consensus_6120#1      ------------------------------------------------------------
                                                                                  

consensus_6120#0      TCCTTCAAGGGCTTGTCCTTTGAGTTACCCAAGAGTCAACAATGATA 1367
consensus_6120#1      -----------------------------------------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)