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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6124#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1535 fasta sequence
[CAACTTTGAATACCCTTCGCTCAAATCCTGGATCCGCCACTGGAGACGCTCATCTGCTCGGTTTGGTTCGAAGATGTTTGCTGCCGCTAGGAAGAAGGCCGTTAACGCGCTCTTGTGAGTCACACCATATACCTCAAGATCGTTCTCGGCATACCACTTGTTGATGCCATGCCACTCAAGTTGGCAGCGCCTCTGGAAACACTTGAAATCAGCTTTTGCCATGTTGTGATAGAGATCATTGTTCACGAGTGGCAGCCGATCCACACATCTCTGCCGGCGCCATATTGCTCCAGATACATTCTTGTTTCAACACGTGGCAGACTTGCTTTCCAGGGGAAGTCTAGGGCGTAACCAATTTGGAGAGACACTATAGCCATGCAACCGGAGTAGACGAAAAGCCATTGACCCGGTATCAATATCCTTCACAGAGCTGTGCCAGTTGTATGTCACGCCTTCCTTAGTCCAATGCCTGAAGGTGTATTCTAAGCAGTACTCATCAATTTCAGTTTTGAAGTAGTAAGATATGCCTAGCCGCTCCAACCGGTCGACGTCATTTGGTCGATTCACAGAAAGGTTAATGCTACAATAATTTTTTTCATATCTGGGGCAGTATGAATTGAATGCATATCTGGACAAATCCGATTGAATAATGTTACGGCTATCAAAAATGATATCCATTTTTTTCAATTCTGGAACTCCCCCATGGAATTTGCTAACAATTCCATCAAGGAACTCGAGACATTTCTTGTCGCCCGTTTGCATCAAAACATAGGCCGTTGCAGCGGGTGAGGATAGGAAGGATCCATCTGAAAGTTGGAGCTTGAGGAGCCTCTTCCAGTCCAAGCCTCGCAGTCCCTCTATGCTAAGAAGCAAACTTGTTGGTAGGGAGTGAAGTATTTCTCTTGGGATCTTCTTAAGCTTTAGCTCCCTTTGGGCATATATCTTGTGCAAAGCAGGGTCATCATAAGGGATGTCAAGAGCCAAGTCCTTGGCTATCTCTAAAAGTGAGGGGAAGGTGATCTCAAAACCAACTGGCATCCATGCCTCTTCCTCTTGGGCCAGCCTCCATATATTTTCCCGAATAAACGACAAACCTTTCTCACGCTTGTCACCATGAACCTTCCACTCCATCAGCGCAATCACACAAGCTAGGGTGTTGAGGAGCCTATCATGAACTAGAAAGCACAAGTCATCACCCCATGAACCATCTGGCAGCTGATTGTGAGAGATCCAATCAATGGTCGAGGGGAATTGTGGGCTGTCGCTGCCGTTATGATTCTTCACAAGTGCGACCCACGCGGTGTCATAGGCAGAAGCACTTATCTCCCCATCGCCCATTGTCCTTAGCATTACTCTGATGGTATTGACCATTTCTTCCATGTCCCGCGGTTCGTCCACGTGGACGCGGAGCGTGCATACGCGTATGATGATCTGGTCGCCGGCGATCCCACGCCGGGGACCACCGCCGGCGGTCGAGCAACGCCAAGTGCGGCGGTGCATTTGCACAAATTAGTATCTGCATGGGCAATGTCCGA]
[+] EMBL CB667338 [CAACTTTGAATACCCTTCGCTCAAATCCTGGATCCGCCACTGGAGACGCTCATCTGCTCGGTTTGGTTCGAAGATGTTTGCTGCCGCTAGGAAGAAGGCCGTTAACGCGCTCTTGTGAGTCACACCATATACCTCAAGATCGTTCTCGGCATACCACTTGTTGATGCCATGCCACTCAAGTTGGCAGCGCCTCTGGAAACACTTGAAATCAGCTTTTGCCATGTTGTGATAGAGATCATTGTTCACGAGTGGCAGCCGATCCACACATCTCTGCCGGCGCCATATTGCTCCAGATACATTCTTGTTTCAACACGTGGCAGACTTGCTTTCCAGGGGAAGTCTAGGGCGTAACCAATTTGGAGAGACACTATAGCCATGCAACCGGAGTAGACGAAAAGCCATTGACCCGGTATCAATATCCTTCACAGAGCTGTGCCAGTTGTATGTCACGCCTTCCTTAGTCCAATGCCTGAAGGTGTATTCTAAGCAGTACTCATCAATTTCAGTTTTGAAGTAGTAAGATATGCCTAGCCGCTCCAACCGGTCGACGTCATTTGGTCGATTCACAGAAAGGTTAATGCTACAATAATTTTTTTCATATCTGGGGCAGTATGAATTGAATGCATATCTGGACAAATCCGATTGAATAATGTTACGGCTATCAAAAATGATATCCATTTTTTTCAATTCTGGAACTCCCCCATGGAATTTGCTAACAATTCCATCAAGGAACTCGAGACATTTCTTGTCGCCCGTTTGCATCAAAACATAGGCC ]
[-] EMBL CB671672 [ ttatttacCTCCCCCAT GAATTTGCTAAC ATTCCATCAAGGAACTCGAGACATTTCTTGTCGCCCGTTTGCATCAAAACATAGGCCGTTGCAGCGGGTGAGGATAGGAAGGATCCATCTGAAAGTTGGAGCTTGAGGAGCCTCTTCCAGTCCAAGCCTCGCAGTCCCTCTATGCTAAGAAGCAAACTTGTTGGTAGGGAGTGAAGTATTTCTCTTGGGATCTTCTTAAGCTTTAGCTCCCTTTGGGCATATATCTTGTGCAAAGCAGGGTCATCATAAGGGATGTCAAGAGCCAAGTCCTTGGCTATCTCTAAAAGTGAGGGGAAGGTGATCTCAAAACCAACTGGCATCCATGCCTCTTCCTCTTGGGCCAGCCTCCATATATTTTCCCGAATAAACGACAAACCTTTCTCACGCTTGTCACCATGAACCTTCCACTCCATCAGCGCAATCACACAAGCTAGGGTGTTGAGGAGCCTATCATGAACTAGAAAGCACAAGTCATCACCCCATGAACCATCTGGCAGCTGATTGTGAGAGATCCAATCAATGGTCGAGGGGAATTGTGGGCTGTCGCTGCCGTTATGATTCTTCACAAGTGCGACCCACGCGGTGTCATAGGCAGAAGCACTTATCTCCCCATCGCCCATTGTCCTTAGCATTACTCTGATGGTATTGACCATTTCTTCCATGTCCCGCGGTTCGTCCACGTGGACGCGGAGCGTGCATACGCGTATGATGATCTGGTCGCCGGCGATCCCACGCCGGGGACCACCGCCGGCGGTCGAGCAACGCCAAGTGCGGCGGTGCATTTGCACAAATTAGTATCTGCATGGGCAATGTCCGA]
consensusID : consensus_6124#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1104 fasta sequence
[CTGGACAAATCCGATTGAATAATGTTACGGCTATCAAAAATGATATCCATTTTTTTCAATTCTGGAACTGTACAGAAACGAACTTTGCATCAAATAGGTTCTATTCAACTAGAAATTAAATGAAGTCTCGAATGAGAATTTATTTATAATTGAAAGATCATTATTTACCTCCCCCATGGAATTTGCTAACAATTCCATCAAGGAACTCGAGACATTTCTTGTCGCCCGTTTGCATCAAAACATAGGCCGTTGCAGCGGGTGAGGATAGGAAGGATCCATCTGAAAGTTGGAGCTTGAGGAGCCTCTTCCAGTCCAAGCCTCGCAGTCCCTCTATGCTAAGAAGCAAACTTGTTGGTAGGGAGTGAAGTATTTCTCTTGGGATCTTCTTAAGCTTTAGCTCCCTTTGGGCATATATCTTGTGCAAAGCAGGGTCATCATAAGGGATGTCAAGAGCCAAGTCCTTGGCTATCTCTAAAAGTGAGGGGAAGGTGATCTCAAAACCAACTGGCATCCATGCCTCTTCCTCTTGGGCCAGCCTCCATATATTTTCCCGAATAAACGACAAACCTTTCTCACGCTTGTCACCATGAACCTTCCACTCCATCAGCGCAATCACACAAGCTAGGGTGTTGAGGAGCCTATCATGAACTAGAAAGCACAAGTCATCACCCCATGAACCATCTGGCAGCTGATTGTGAGAGATCCAATCAATGGTCGAGGGGAATTGTGGGCTGTCGCTGCCGTTATGATTCTTCACAAGTGCGAC-CCACGCGGTGTCATAGGCAGAAGCACTTATCTCCCCATCGCCCATTGTCCTTAGCATTACTCTGATGGTATTGACCATTTCTTCCATGTCCCGCGGTTCGTCTTTTCCACCGCTCCTCCTGTCAACTGTTTCTTGTGTTTCTTTGGCTTTGCAATATACTATTCCCTTTGATTGCTCTTTATCACGTGGACGCGGAGCGTGCATACGCGTATGATGATCTGGTCGCCGGCGATCCCACGCCGGGGACCA-CCGCCGGCGGTCGAGCAACGCCAAGTGCGGCGGTGCATTTGCACAAATTAGTATCTGCATGGGCAATATCCGAGAAAGTCCGTATGGTC]
[-] EMBL AK066759 [CTGGACAAATCCGATTGAATAATGTTACGGCTATCAAAAATGATATCCATTTTTTTCAATTCTGGAACTGTACAGAAACGAACTTTGCATCAAATAGGTTCTATTCAACTAGAAATTAAATGAAGTCTCGAATGAGAATTTATTTATAATTGAAAGATCATTATTTACCTCCCCCATGGAATTTGCTAACAATTCCATCAAGGAACTCGAGACATTTCTTGTCGCCCGTTTGCATCAAAACATAGGCCGTTGCAGCGGGTGAGGATAGGAAGGATCCATCTGAAAGTTGGAGCTTGAGGAGCCTCTTCCAGTCCAAGCCTCGCAGTCCCTCTATGCTAAGAAGCAAACTTGTTGGTAGGGAGTGAAGTATTTCTCTTGGGATCTTCTTAAGCTTTAGCTCCCTTTGGGCATATATCTTGTGCAAAGCAGGGTCATCATAAGGGATGTCAAGAGCCAAGTCCTTGGCTATCTCTAAAAGTGAGGGGAAGGTGATCTCAAAACCAACTGGCATCCATGCCTCTTCCTCTTGGGCCAGCCTCCATATATTTTCCCGAATAAACGACAAACCTTTCTCACGCTTGTCACCATGAACCTTCCACTCCATCAGCGCAATCACACAAGCTAGGGTGTTGAGGAGCCTATCATGAACTAGAAAGCACAAGTCATCACCCCATGAACCATCTGGCAGCTGATTGTGAGAGATCCAATCAATGGTCGAGGGGAATTGTGGGCTGTCGCTGCCGTTATGATTCTTCACAAGTGCGAC CCACGCGGTGTCATAGGCAGAAGCACTTATCTCCCCATCGCCCATTGTCCTTAGCATTACTCTGATGGTATTGACCATTTCTTCCATGTCCCGCGGTTCGTCTTTTCCACCGCTCCTCCTGTCAACTGTTTCTTGTGTTTCTTTGGCTTTGCAATATACTATTCCCTTTGATTGCTCTTTATCACGTGGACGCGGAGCGTGCATACGCGTATGATGATCTGGTCGCCGGCGATCCCACGCCGGGGACCA CCGCCGGCGGTCGAGCAACGCCAAGTGCGGCGGTGCATTTGCACAAATTAGTATCTGCATGGGCAATATCCGAGAAAGTCCGTATGGTC]
[-] EMBL CB667337 [ TCATCACCCCATGAACCATTTGGCAGCTGATTGTGAGAGATCCAATCAATGGTAGAGGGGAATTGTGGGCTGTCGCTGCCGTTATGATTCTTCACAAGTGCAACTCCACGCGGTGTCATAGGCAGAAGCACTTATCTCCCCATCGCCCATTGTCCTTAGCATTACTATGATGGTATTGACCATTTCTTCCATGTCCCGCGGTTCGTGTTTTCCACCGCTCCTCCTGTCAACTGTTTGTTGTGTTTCTTTGGCTTTGCAATATACTATTCCCTTTGATTGCTCTTTATCTCGTGGACGCGGAGCGTGCATACGCGTATGATGATTTGGTCGCCGGCGATCCCACGCCGGGGACCATCCGCCGGCGGTCGAGCAACGCCAAGTGCGGCGGTGCATTGGGACAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6124#0 CAACTTTGAATACCCTTCGCTCAAATCCTGGATCCGCCACTGGAGACGCTCATCTGCTCG 60
consensus_6124#1 ------------------------------------------------------------
consensus_6124#0 GTTTGGTTCGAAGATGTTTGCTGCCGCTAGGAAGAAGGCCGTTAACGCGCTCTTGTGAGT 120
consensus_6124#1 ------------------------------------------------------------
consensus_6124#0 CACACCATATACCTCAAGATCGTTCTCGGCATACCACTTGTTGATGCCATGCCACTCAAG 180
consensus_6124#1 ------------------------------------------------------------
consensus_6124#0 TTGGCAGCGCCTCTGGAAACACTTGAAATCAGCTTTTGCCATGTTGTGATAGAGATCATT 240
consensus_6124#1 ------------------------------------------------------------
consensus_6124#0 GTTCACGAGTGGCAGCCGATCCACACATCTCTGCCGGCGCCATATTGCTCCAGATACATT 300
consensus_6124#1 ------------------------------------------------------------
consensus_6124#0 CTTGTTTCAACACGTGGCAGACTTGCTTTCCAGGGGAAGTCTAGGGCGTAACCAATTTGG 360
consensus_6124#1 ------------------------------------------------------------
consensus_6124#0 AGAGACACTATAGCCATGCAACCGGAGTAGACGAAAAGCCATTGACCCGGTATCAATATC 420
consensus_6124#1 ------------------------------------------------------------
consensus_6124#0 CTTCACAGAGCTGTGCCAGTTGTATGTCACGCCTTCCTTAGTCCAATGCCTGAAGGTGTA 480
consensus_6124#1 ------------------------------------------------------------
consensus_6124#0 TTCTAAGCAGTACTCATCAATTTCAGTTTTGAAGTAGTAAGATATGCCTAGCCGCTCCAA 540
consensus_6124#1 ------------------------------------------------------------
consensus_6124#0 CCGGTCGACGTCATTTGGTCGATTCACAGAAAGGTTAATGCTACAATAATTTTTTTCATA 600
consensus_6124#1 CTGGACAAATCCGATTGAATAATGTTACGGCTATCAAAAATGATATCCATTTTTTTCAAT 60
* ** * * * *** ** * ** * * **********
consensus_6124#0 TCTGGGGCAGTAT-GAATTGAATGCATATCTGGACAAATCCGATTGAAT---AATGTTAC 656
consensus_6124#1 TCTGGAACTGTACAGAAACGAACTTTGCATCAAATAGGTTCTATTCAACTAGAAATTAAA 120
***** * *** *** *** * * * * *** ** ** * *
consensus_6124#0 GGCTATCAAAAATGATA-TCCATTTTT--TTCAA------TTCTGGAACTCCCCCATGGA 707
consensus_6124#1 TGAAGTCTCGAATGAGAATTTATTTATAATTGAAAGATCATTATTTACCTCCCCCATGGA 180
* ** ***** * * **** * ** ** ** * * ************
consensus_6124#0 ATTTGCTAACAATTCCATCAAGGAACTCGAGACATTTCTTGTCGCCCGTTTGCATCAAAA 767
consensus_6124#1 ATTTGCTAACAATTCCATCAAGGAACTCGAGACATTTCTTGTCGCCCGTTTGCATCAAAA 240
************************************************************
consensus_6124#0 CATAGGCCGTTGCAGCGGGTGAGGATAGGAAGGATCCATCTGAAAGTTGGAGCTTGAGGA 827
consensus_6124#1 CATAGGCCGTTGCAGCGGGTGAGGATAGGAAGGATCCATCTGAAAGTTGGAGCTTGAGGA 300
************************************************************
consensus_6124#0 GCCTCTTCCAGTCCAAGCCTCGCAGTCCCTCTATGCTAAGAAGCAAACTTGTTGGTAGGG 887
consensus_6124#1 GCCTCTTCCAGTCCAAGCCTCGCAGTCCCTCTATGCTAAGAAGCAAACTTGTTGGTAGGG 360
************************************************************
consensus_6124#0 AGTGAAGTATTTCTCTTGGGATCTTCTTAAGCTTTAGCTCCCTTTGGGCATATATCTTGT 947
consensus_6124#1 AGTGAAGTATTTCTCTTGGGATCTTCTTAAGCTTTAGCTCCCTTTGGGCATATATCTTGT 420
************************************************************
consensus_6124#0 GCAAAGCAGGGTCATCATAAGGGATGTCAAGAGCCAAGTCCTTGGCTATCTCTAAAAGTG 1007
consensus_6124#1 GCAAAGCAGGGTCATCATAAGGGATGTCAAGAGCCAAGTCCTTGGCTATCTCTAAAAGTG 480
************************************************************
consensus_6124#0 AGGGGAAGGTGATCTCAAAACCAACTGGCATCCATGCCTCTTCCTCTTGGGCCAGCCTCC 1067
consensus_6124#1 AGGGGAAGGTGATCTCAAAACCAACTGGCATCCATGCCTCTTCCTCTTGGGCCAGCCTCC 540
************************************************************
consensus_6124#0 ATATATTTTCCCGAATAAACGACAAACCTTTCTCACGCTTGTCACCATGAACCTTCCACT 1127
consensus_6124#1 ATATATTTTCCCGAATAAACGACAAACCTTTCTCACGCTTGTCACCATGAACCTTCCACT 600
************************************************************
consensus_6124#0 CCATCAGCGCAATCACACAAGCTAGGGTGTTGAGGAGCCTATCATGAACTAGAAAGCACA 1187
consensus_6124#1 CCATCAGCGCAATCACACAAGCTAGGGTGTTGAGGAGCCTATCATGAACTAGAAAGCACA 660
************************************************************
consensus_6124#0 AGTCATCACCCCATGAACCATCTGGCAGCTGATTGTGAGAGATCCAATCAATGGTCGAGG 1247
consensus_6124#1 AGTCATCACCCCATGAACCATCTGGCAGCTGATTGTGAGAGATCCAATCAATGGTCGAGG 720
************************************************************
consensus_6124#0 GGAATTGTGGGCTGTCGCTGCCGTTATGATTCTTCACAAGTGCGACCCACGCGGTGTCAT 1307
consensus_6124#1 GGAATTGTGGGCTGTCGCTGCCGTTATGATTCTTCACAAGTGCGACCCACGCGGTGTCAT 780
************************************************************
consensus_6124#0 AGGCAGAAGCACTTATCTCCCCATCGCCCATTGTCCTTAGCATTACTCTGATGGTATTGA 1367
consensus_6124#1 AGGCAGAAGCACTTATCTCCCCATCGCCCATTGTCCTTAGCATTACTCTGATGGTATTGA 840
************************************************************
consensus_6124#0 CCATTTCTTCCATGTCCCGCGGTTCGTC-------------------------------- 1395
consensus_6124#1 CCATTTCTTCCATGTCCCGCGGTTCGTCTTTTCCACCGCTCCTCCTGTCAACTGTTTCTT 900
****************************
consensus_6124#0 ------------------------------------------------CACGTGGACGCG 1407
consensus_6124#1 GTGTTTCTTTGGCTTTGCAATATACTATTCCCTTTGATTGCTCTTTATCACGTGGACGCG 960
************
consensus_6124#0 GAGCGTGCATACGCGTATGATGATCTGGTCGCCGGCGATCCCACGCCGGGGACCACCGCC 1467
consensus_6124#1 GAGCGTGCATACGCGTATGATGATCTGGTCGCCGGCGATCCCACGCCGGGGACCACCGCC 1020
************************************************************
consensus_6124#0 GGCGGTCGAGCAACGCCAAGTGCGGCGGTGCATTTGCACAAATTAGTATCTGCATGGGCA 1527
consensus_6124#1 GGCGGTCGAGCAACGCCAAGTGCGGCGGTGCATTTGCACAAATTAGTATCTGCATGGGCA 1080
************************************************************
consensus_6124#0 ATGTCCGA---------------- 1535
consensus_6124#1 ATATCCGAGAAAGTCCGTATGGTC 1104
** *****
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||