cluster # 613

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Oryza sativa
cluster # 613 cluster # 613 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_613#0 length = 611 sequences # 1

consensus_613#1 length = 423 sequences # 1

consensusID : consensus_613#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 611
fasta sequence

                              [TTTTTTTTTTTTTTCACCATCCCCGTCCCGTTGTCGCACACCAAAGGCTGGATGTCATCAGCGTCCGCCATCTCTCTCTCTACCTGCTACTTTCTTTCTTTCTTCTTTTCACCATCCCCGTCCCGTTGTCGCACACCAAAGGCTGGATGTCATCAGCGTCCGCCATCTCTCTCTCTACCTGCTACTTTCTTTCTTTCTTCTTTTCACCATCCCCGTCCCGTTGTCGCACACCAAAGGCTGGATGTCATCAGCGTCCGCCATCTCTCTCTCTACCTGCAACTTTCTTTCTTTCTTCTTTTCACCATCCCCGTCCCGTTGTCGCACACCAGAGGCTGGATGTCATCAGCGTCCGCCATCTCTCTCTCTACCTGCAACTTTCTTTCTTTCTTCTTTACACCACCCCCGTCCCGTTGTCGCACACCAGAGGCTGGATGTCATCAGCGTCCGCCATCTCTCTCTACCGGCTACTTTCTTCCTTTCTTCTTTTCACCATCCCCGTCCCGTTGTCGCACACCAGAGGCTGGATGTCATCAGCGTCCGCCATCTCTCTCTCTACCTGCTACTTTCTTTCTTTCTTCTTTTCACCATCCCCGTCCCGTTGCCCGGCCTCT]

[+] EMBL CA759589             [TTTTTTTTTTTTTTCACCATCCCCGTCCCGTTGTCGCACACCAAAGGCTGGATGTCATCAGCGTCCGCCATCTCTCTCTCTACCTGCTACTTTCTTTCTTTCTTCTTTTCACCATCCCCGTCCCGTTGTCGCACACCAAAGGCTGGATGTCATCAGCGTCCGCCATCTCTCTCTCTACCTGCTACTTTCTTTCTTTCTTCTTTTCACCATCCCCGTCCCGTTGTCGCACACCAAAGGCTGGATGTCATCAGCGTCCGCCATCTCTCTCTCTACCTGCAACTTTCTTTCTTTCTTCTTTTCACCATCCCCGTCCCGTTGTCGCACACCAGAGGCTGGATGTCATCAGCGTCCGCCATCTCTCTCTCTACCTGCAACTTTCTTTCTTTCTTCTTTACACCACCCCCGTCCCGTTGTCGCACACCAGAGGCTGGATGTCATCAGCGTCCGCCATCTCTCTCTACCGGCTACTTTCTTCCTTTCTTCTTTTCACCATCCCCGTCCCGTTGTCGCACACCAGAGGCTGGATGTCATCAGCGTCCGCCATCTCTCTCTCTACCTGCTACTTTCTTTCTTTCTTCTTTTCACCATCCCCGTCCCGTTGCCCGGCCTCT]




>consensus_613#0
TTTTTTTTTTTTTTCACCATCCCCGTCCCGTTGTCGCACACCAAAGGCTGGATGTCATCA
GCGTCCGCCATCTCTCTCTCTACCTGCTACTTTCTTTCTTTCTTCTTTTCACCATCCCCG
TCCCGTTGTCGCACACCAAAGGCTGGATGTCATCAGCGTCCGCCATCTCTCTCTCTACCT
GCTACTTTCTTTCTTTCTTCTTTTCACCATCCCCGTCCCGTTGTCGCACACCAAAGGCTG
GATGTCATCAGCGTCCGCCATCTCTCTCTCTACCTGCAACTTTCTTTCTTTCTTCTTTTC
ACCATCCCCGTCCCGTTGTCGCACACCAGAGGCTGGATGTCATCAGCGTCCGCCATCTCT
CTCTCTACCTGCAACTTTCTTTCTTTCTTCTTTACACCACCCCCGTCCCGTTGTCGCACA
CCAGAGGCTGGATGTCATCAGCGTCCGCCATCTCTCTCTACCGGCTACTTTCTTCCTTTC
TTCTTTTCACCATCCCCGTCCCGTTGTCGCACACCAGAGGCTGGATGTCATCAGCGTCCG
CCATCTCTCTCTCTACCTGCTACTTTCTTTCTTTCTTCTTTTCACCATCCCCGTCCCGTT
GCCCGGCCTCT

consensusID : consensus_613#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 423
fasta sequence

                              [ACAAGGTTTGTTGGGTAGCCTAGCTACACAAGAAAGAGAAGGAGGAGGAGAAGGAAGAGGGAGGAGGAAAAGAAAGAAGAGCTAGAGAAGAAGTTTGTTGTATTTGCAGTAGTAAGAAGAAAGAAAGAAAGTAGCAGGTAGAGAGAGAGATGGCGGACGCTGATGACATCCAGCCTCTGGTGTGCGACAACGGGACGGGGATGGTGAAGGCCGGGTTCGCGGGGGACGACGCGCCGCGGGCGGTGTTCCCGAGCATCGTGGGGAGGCCACGGCACACGGGGGTGATGGTGGGGATGGGGCAGAAGGACGCGTACGTCGGGGACGAGGCGCAGTCGAAGAGAGGCATCCTGACGCTCAAGTACCCCATCGAGCACGGCATCGTCAACAACTTGGACGACATTGAGAAGATATTGCACCACAACT]

[+] EMBL C73412               [ACAAGGTTTGTTGGGTAGCCTAGCTACACAAGAAAGAGAAGGAGGAGGAGAAGGAAGAGGGAGGAGGAAAAGAAAGAAGAGCTAGAGAAGAAGTTTGTTGTATTTGCAGTAGTAAGAAGAAAGAAAGAAAGTAGCAGGTAGAGAGAGAGATGGCGGACGCTGATGACATCCAGCCTCTGGTGTGCGACAACGGGACGGGGATGGTGAAGGCCGGGTTCGCGGGGGACGACGCGCCGCGGGCGGTGTTCCCGAGCATCGTGGGGAGGCCACGGCACACGGGGGTGATGGTGGGGATGGGGCAGAAGGACGCGTACGTCGGGGACGAGGCGCAGTCGAAGAGAGGCATCCTGACGCTCAAGTACCCCATCGAGCACGGCATCGTCAACAACTTGGACGACATTGAGAAGATATTGCACCACAACT]




>consensus_613#1
ACAAGGTTTGTTGGGTAGCCTAGCTACACAAGAAAGAGAAGGAGGAGGAGAAGGAAGAGG
GAGGAGGAAAAGAAAGAAGAGCTAGAGAAGAAGTTTGTTGTATTTGCAGTAGTAAGAAGA
AAGAAAGAAAGTAGCAGGTAGAGAGAGAGATGGCGGACGCTGATGACATCCAGCCTCTGG
TGTGCGACAACGGGACGGGGATGGTGAAGGCCGGGTTCGCGGGGGACGACGCGCCGCGGG
CGGTGTTCCCGAGCATCGTGGGGAGGCCACGGCACACGGGGGTGATGGTGGGGATGGGGC
AGAAGGACGCGTACGTCGGGGACGAGGCGCAGTCGAAGAGAGGCATCCTGACGCTCAAGT
ACCCCATCGAGCACGGCATCGTCAACAACTTGGACGACATTGAGAAGATATTGCACCACA
ACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_613#0      TTTTTTTTTTTTTTCACCATCCCCGTCCCGTTGTCGCACACCAAAGGCTGGATGTCATCA 60
consensus_613#1      ------------------------------------------------------------
                                                                                 

consensus_613#0      GCGTCCGCCATCTCTCTCTCTACCTGCTACTTTCTTTCTTTCTTCTTTTCACCATCCCCG 120
consensus_613#1      --------------------------------------------------ACAAGGTTTG 10
                                                                       ** *     *

consensus_613#0      TCCCGTTGTCGCACACCA-AAGGCTGGATGTCATCAGCGTCCGCCATCTCTCTCTCTACC 179
consensus_613#1      TTGGGTAGCCTAGCTACACAAGAAAGAGAAGGAGGAGGAGAAGGAAGAGGGAGGAGGAAA 70
                     *   ** * *   *  ** ***   *      *  **     *  *           *  

consensus_613#0      TGCTACTTTCTTTCTTTCTTCTTTTCACCATCCCCGTCCCGTTGTCGCACACCAAAGGCT 239
consensus_613#1      AGAAAGAAGAGCTAGAGAAGAAGTTTGTTGTATTTGCAGTAGTAA-GAAGAAAGAAAGAA 129
                      *  *       *          **     *    *      *   * * *   ** *  

consensus_613#0      GGATGTCATCAGCGTCCGCCATCTCTCTCTCTACCTGCAACTTTCTTTCTTTCTTCTTTT 299
consensus_613#1      AGTAGCAGGTAGAGAGAGAGATGGCGGACGCTGATGACA--------TCCAGCCTCTGGT 181
                      *  *     ** *   *  **  *   * **     **        **   * ***  *

consensus_613#0      CACCATCCCCGTCCCGTTGTCGCACACCAGAGGCTGGATGTCATCAGCGTCCGC-CATCT 358
consensus_613#1      GTGCGACAACGGGACG----GGGATGGTGAAGGCCGGGT-TCGCGGGGGACGACGCGCCG 236
                        *  *  **   **     * *      **** ** * **    * * *  * *  * 

consensus_613#0      CTCTCTCTACCTGCAACTTTCTTTCTTTCTTCTTTACACCACCCCCGTCCCGTTGTCGCA 418
consensus_613#1      CGGGCGGTGTTCCCGAGCATCGTGGGGAGGCC---ACGGCACACGGGG---GTGATGGTG 290
                     *   *  *     * *   ** *        *   **  *** *  *    **  * *  

consensus_613#0      CACCAGAGGCTGGATGTCATCAGCGTCCGCCATCTCTCTCTACCGGCTACTTTCTTCCTT 478
consensus_613#1      GGGATGGGGCAGAAGGACGCGTACGTCGGGGACGAGGCGCAGTCGAAGAGAGGCATCCTG 350
                          * *** * * * *     **** *  *     * *   **   *    * **** 

consensus_613#0      TCTTCTTTTCACCATCCCCGTCCCGTTGTCGCACACCAGAGGCTGGATGTCATCAGCGTC 538
consensus_613#1      ACGCTCAAGTACCCCATCGAGCACGGCATCGT---CAACAACTTGGACGACATTGAGAAG 407
                      *        ***    *   * **   ***    * * *   **** * ***       

consensus_613#0      CGCCATCTCTCTCTCTACCTGCTACTTTCTTTCTTTCTTCTTTTCACCATCCCCGTCCCG 598
consensus_613#1      ----ATATTGCACCACAACT---------------------------------------- 423
                         ** *  * *   * **                                        

consensus_613#0      TTGCCCGGCCTCT 611
consensus_613#1      -------------