Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6140 cluster # 6140       Sequences # 4       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6140#0 length = 1129 sequences # 4  
consensusID : consensus_6140#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1129
fasta sequence 
                              [TCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCCCCCTCGCGTTCCAACCCCTCCTCTCTCTCTTCCCTTCATTCGTCCGTACATCTCTCTCTCTCTCTCTCTCTCTCCT-CCACGCCCAAACACCTCTCCGGCGAGGCGAAGCGAAGGGAAGCCCGATGGCCGCGAGCTCCGGCGACGACGCGCCGAGGCCCAATCCGCTCCCGTCCGCGCTCGTGTCCAACCTGCAGTCCGTCCTCGCGGCGCGCCGGCCGCCGCCGCCGGCCGCGGAGGAGGCCGGCGCCGAGGCCCCGGCACCGGAGGCGGCGGAGTCCTCCGGCGCTGCTCCCGTGGCCGATGAAGGTCCCGCGAAGCCGGCCGTACTCCTGACCTGCGCCGGCGGGATCCGGGCGCCGGGTCTCGCGGCCCTCGTCGACTCCCTCGTCGCCGGCGGCCGATGCGACGTCCACGTATGCGCGCCCGAATCGGACAAGCCTGCTTGCGGCTATTCCATTACCATCCGCGAGACCATTACAGCAACATCGGTGGATTTCAAAGGGGCGAAAGCTTTCGAGATATCAGGGACACCGGTGGATTGCGTCTCTTTGGCATTATCTGGGAGGCTGTTCTCTTGGTCGGCGCCTGCTTTGGTGATCAGTGGGATCAATGCAGGGGCGAACTGTGGATATGAGATGTTTCATTCTTCTGCCATTGCTGCTGCAAGGGAGGCCTTACTGTATGATGTTCCTTCAATTGCAATATCATTGAATTGGAAGAAGGATGAAAGCAAAGATAGTGATTTCAAGGATGCTGCTGAGGTTTGCCTACCATTGATACACGCTGCCTTGGAAGGCGTTGAGAAAGGAACCTTCCTCAGAGGCTGCTTACTGAACATTGGGGTTCCAAGCTCACCAACTACAAATAAGGGTTTCAAGCTGACTAAGCAAAGCATATATCGTCCTGCCCAAAGTTGGG-AAGGTGTGTCCACAAGCAGACCTACACCTGCTACTCACTTCATGGGCATGCACCAAAGCCTTGGTATTCAGCTCGCACAACTTGGGAAGGATGCATCTGCAGCAGGGGCTGCACGCAGAATTAATGCTCAGCGGAAGATTGTCGAGGTTGAGTCTGTTGCATCTACAGGGAAAGC]

[+] EMBL AK121006             [TCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCCCCCTCGCGTTCCAACCCCTCCTCTCTCTCTTCCCTTCATTCGTCCGTACATCTCTCTCTCTCTCTCTCTCTCTCCT CCACGCCCAAACACCTCTCCGGCGAGGCGAAGCGAAGGGAAGCCCGATGGCCGCGAGCTCCGGCGACGACGCGCCGAGGCCCAATCCGCTCCCGTCCGCGCTCGTGTCCAACCTGCAGTCCGTCCTCGCGGCGCGCCGGCCGCCGCCGCCGGCCGCGGAGGAGGCCGGCGCCGAGGCCCCGGCACCGGAGGCGGCGGAGTCCTCCGGCGCTGCTCCCGTGGCCGATGAAGGTCCCGCGAAGCCGGCCGTACTCCTGACCTGCGCCGGCGGGATCCGGGCGCCGGGTCTCGCGGCCCTCGTCGACTCCCTCGTCGCCGGCGGCCGATGCGACGTCCACGTATGCGCGCCCGAATCGGACAAGCCTGCTTGCGGCTATTCCATTACCATCCGCGAGACCATTACAGCAACATCGGTGGATTTCAAAGGGGCGAAAGCTTTCGAGATATCAGGGACACCGGTGGATTGCGTCTCTTTGGCATTATCTGGGAGGCTGTTCTCTTGGTCGGCGCCTGCTTTGGTGATCAGTGGGATCAATGCAGGGGCGAACTGTGGATATGAGATGTTTCATTCTTCTGCCATTGCTGCTGCAAGGGAGGCCTTACTGTATGATGTTCCTTCAATTGCAATATCATTGAATTGGAAGAAGGATGAAAGCAAAGATAGTGATTTCAAGGATGCTGCTGAGGTTTGCCTACCATTGATACACGCTGCCTTGGAAGGCGTTGAGAAAGGAACCTTCCTCAGAGGCTGCTTACTGAACATTGGGGTTCCAAGCTCACCAACTACAAATAAGGGTTTCAAGCTGACTAAGCAAAGCATATATCGTCCTGCCCAAAGTTGGG AAGGTGTGTCCACAAGCAGACCTACACCTGCTACTCACTTCATGGGCATGCACCAAAGCCTTGGTATTCAGCTCGCACAACTTGGGAAGGATGCATCTGCAGCAGGGGCTGCACGCAGAATTAATGCTCAGCGGAAGATTGTCGAGGTTGAGTCTGTTGCATCTACAGGGAAAGC]
[+] EMBL CB648584             [                                                                                                      TCTCTCCCTTAAAACGCCCAAACACCTCTCCGGCGAGGCGAAGCGAAGGGAAGCCCGATGGCCGCGAGCTCCGGCGACCCCCCACAGAGGCCCAATCCGCTCCCGTCCGCGCTCGTGTCCAACCTGCAGTCCGTCCTCGCGGCGCGCCGGCCGCCGCCGCCGGCCGCGGAGGAGGCCGGCGCCGAGGCCCCGGCACCGGAGGCGGCGGAGTCCTCCGGCGCTGCTCCCGTGGCCGATGAAGGTCCCGCGAAGCCGGCCGTACTCCTGACCTGCGCCGGCGGGATCCGGGCGCCGGGTCTCGCGGCCCTCGTCGACTCCCTCGTCGCCGGCGGCCGATGCGACGTCCACGTATGCGCGCCCGAATCGGACAAGCCTGCTTGCGGCTATTCCATTACCATCCGCGAGACCATTACAGCAACATCGGTGGATTTCAAAGGGGCGAAAGCTTTCGAGATATCAGGGACACCGGTGGATTGCGTCTCTTTGGCATTATCTGGGAGGCTGTTCTCTTGGTCGGCGCCTGCTTTGGTGATCAGTGGGATCAATGCAGGGGCGAACTGTGGATATGAGATGTTTCATTCTTCTGCCATTGCTGCTGCAAGGGAGGCCTTACTGTATGATGTTCCTTCAATTGCAATATCATTGAATTGGAAGAAGGATGAAAGCAAAGATAGTGATTTCAAGGATGCTGCTGAGGTTTGCCTACCATTGATACACGCTGCCTTGGAAAGCGTTGAGAAAGGAACCTTCCTCAGAGGCTGCTTACTGAACATTGGGGTTCCAAGCTCACC                                                                                                                                                                                                                                              ]
[+] EMBL CF303232             [                                                                                                                                                                                                                                                                                                                                                                                                                   CGGCCCTCGTCGACTCCCTCGTCGCCGGCGGCCGATGCGACGTCCACGTATGCGCGCCCGAATCGGACAAGCCTGCTTGCGGCTATTCCATTACCATCCGCGAGACCATTACAGCAACATCGGTGGATTTCAAAGGGGCGAAAGCTTTCGAGATATCAGGGACACCGGTGGATTGCGTCTCTTTGGCATTATCTGGGAGGCTGTTCTCTTGGTCGGCGCCTGCTTTGGTGATCAGTGGGATCAATGCAGGGGCGAACTGTGGATATGAGATGTTTCATTCTTCTGCCATTGCTGCTGCAAGGGAGGCCTTACTGTATGATGTTCCTTCAATTGCAATATCATTGAATTGGAAGAAGGATGAAAGCAAAGATAGTGATTTCAAGGATGCTGCTGAGGTTTGCCTACCATTGATACACGCTGCCTTGGAAGGCGTTGAGAAAGGAACCTTCCTCAGAGGCTGCTTACTGAACATTGGGGTTCCAAGCTCACC                                                                                                                                                                                                                                              ]
[+] EMBL CF310004             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ACCATTACAGCAACATCGGTGGATTTCAAAGGGGCGAAAGCTTTCGAGATATCAGGGACACCGGTGGATTGCGTCTCTTTGGCATTATCTGGGAGGCTGTTCTCTTGGTCGGCGCCTGCTTTGGTGATCAGTGGGATCAATGCAGGGGCGAACTGTGGATATGAGATGTTTCATTCTTCTGCCATTGCTGCTGCAAGGGAGGCCTTACTGTATGATGTTCCTTCAATTGCAATATCATTGAATTGGAAGAAGGATGAAAGCAAAGATAGTGATTTCAAGGATGCTGCTGAGGTTTGCCTACCATTGATACACGCTGCCTTGGAAGGCGTTGAGAAAGGAACCTTCCTCAGAGGCTGCTTACTGAACATTGGGGTTCCAAGCTCACCAACTACAAATAAGGGTTTCAAGCTGACTAAGCAAAGCATATATCGTCCTGCCCAAAGTTGGGAAAGGTGTGTCCACAAGCAGACCTACACCTGCTACTCACTTCATGGGCATGCACCAAAGCCTTGGTATTCAGCT                                                                                                      ]




>consensus_6140#0
TCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCCCCCTCGCGTTCCAACCCCTCCTCT
CTCTCTTCCCTTCATTCGTCCGTACATCTCTCTCTCTCTCTCTCTCTCTCCTCCACGCCC
AAACACCTCTCCGGCGAGGCGAAGCGAAGGGAAGCCCGATGGCCGCGAGCTCCGGCGACG
ACGCGCCGAGGCCCAATCCGCTCCCGTCCGCGCTCGTGTCCAACCTGCAGTCCGTCCTCG
CGGCGCGCCGGCCGCCGCCGCCGGCCGCGGAGGAGGCCGGCGCCGAGGCCCCGGCACCGG
AGGCGGCGGAGTCCTCCGGCGCTGCTCCCGTGGCCGATGAAGGTCCCGCGAAGCCGGCCG
TACTCCTGACCTGCGCCGGCGGGATCCGGGCGCCGGGTCTCGCGGCCCTCGTCGACTCCC
TCGTCGCCGGCGGCCGATGCGACGTCCACGTATGCGCGCCCGAATCGGACAAGCCTGCTT
GCGGCTATTCCATTACCATCCGCGAGACCATTACAGCAACATCGGTGGATTTCAAAGGGG
CGAAAGCTTTCGAGATATCAGGGACACCGGTGGATTGCGTCTCTTTGGCATTATCTGGGA
GGCTGTTCTCTTGGTCGGCGCCTGCTTTGGTGATCAGTGGGATCAATGCAGGGGCGAACT
GTGGATATGAGATGTTTCATTCTTCTGCCATTGCTGCTGCAAGGGAGGCCTTACTGTATG
ATGTTCCTTCAATTGCAATATCATTGAATTGGAAGAAGGATGAAAGCAAAGATAGTGATT
TCAAGGATGCTGCTGAGGTTTGCCTACCATTGATACACGCTGCCTTGGAAGGCGTTGAGA
AAGGAACCTTCCTCAGAGGCTGCTTACTGAACATTGGGGTTCCAAGCTCACCAACTACAA
ATAAGGGTTTCAAGCTGACTAAGCAAAGCATATATCGTCCTGCCCAAAGTTGGGAAGGTG
TGTCCACAAGCAGACCTACACCTGCTACTCACTTCATGGGCATGCACCAAAGCCTTGGTA
TTCAGCTCGCACAACTTGGGAAGGATGCATCTGCAGCAGGGGCTGCACGCAGAATTAATG
CTCAGCGGAAGATTGTCGAGGTTGAGTCTGTTGCATCTACAGGGAAAGC

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)