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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6143#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 904 fasta sequence
[CGCCCACGCGTCCGCTTCATTCCAAGCCACTACACTAGCACACACTACATACAATCTTCTTCTTCTTCTTCTTCTTGAGTTCTTGGAGGTCGAGGGGTGGGTCATCAATGGCGGAGGTGGAGGTGAGGGTGAGGCAGGAGCAGGTGGCGGAGTTCAGGGAGACGTTCGCGTTCTTCGACAAGGACGGGGACGGGTGCATCACGCTGGAGGAGCTGGACACGGTGGTGCGGTCGCTGGGGCAGACGCCGACGAGGGAGGAGCTCGCCGAGATGATCCGCGACGTCGACGTCGACGGCAACGGCACCATC-GAGTTCGCCGAGTTCCTC-GCCCTCATGG-CCCGCAAGGCCTCGCGCGGCGGCGAGAACGGCGGAGGAGGAGACGACTCCGGCGACGCCGCCGACGAGGAGCTCCGGGAGGCGTTCAAGGTGTTCGACAAGGACCAGGACGGGCTCATCTCCGCCGCCGAGCTCCGCCACGTGATGATCAGCCTCGGCGAGAAGCTCACCGACGAGGAGGTGGAGCAGATGATCCGGGAGGCCGACCTCGACGGCGACGGCCAGGTCAACTTCGACGAGTTCGTCAGGATGATGATGCTCTCCGACCAATAATTAATCTCCTCTCTACTATATATCCAAAATCAATATATCTCTCTCCATTTCATTTTGTTTTTTTTCGATCTCTTCTTTCTTTCTTTCTTCCCAATTTGATTAGTTACCTAACTAATTAAGGTAGCTAGCTATAGCTACTGTCATTTAATTTGGCCTTGGTTAATTAGTTCCTTGATTAATGTATTTGTTTGTATGACCAAATCATACATACATGTATGTCCATTAATTTTTGCATGCAAATGGAAGTATATACATATATCTCCAAATATATGTCAATAATTTTTTTGTTGCAAAAA]
[+] EMBL AB060552 [CGCCCACGCGTCCGCTTCATTCCAAGCCACTACACTAGCACACACTACATACAATCTTCTTCTTCTTCTTCTTCTTGAGTTCTTGGAGGTCGAGGGGTGGGTCATCAATGGCGGAGGTGGAGGTGAGGGTGAGGCAGGAGCAGGTGGCGGAGTTCAGGGAGACGTTCGCGTTCTTCGACAAGGACGGGGACGGGTGCATCACGCTGGAGGAGCTGGACACGGTGGTGCGGTCGCTGGGGCAGACGCCGACGAGGGAGGAGCTCGCCGAGATGATCCGCGACGTCGACGTCGACGGCAACGGCACCATC GAGTTCGCCGAGTTCCTC GCCCTCATGG CCCGCAAGGCCTCGCGCGGCGGCGAGAACGGCGGAGGAGGAGACGACTCCGGCGACGCCGCCGACGAGGAGCTCCGGGAGGCGTTCAAGGTGTTCGACAAGGACCAGGACGGGCTCATCTCCGCCGCCGAGCTCCGCCACGTGATGATCAGCCTCGGCGAGAAGCTCACCGACGAGGAGGTGGAGCAGATGATCCGGGAGGCCGACCTCGACGGCGACGGCCAGGTCAACTTCGACGAGTTCGTCAGGATGATGATGCTCTCCGACCAATAATTAATCTCCTCTCTACTATATATCCAAAATCAATATATCTCTCTCCATTTCATTTTGTTTTTTTTCGATCTCTTCTTTCTTTCTTTCTTCCCAATTTGATTAGTTACCTAACTAATTAAGGTAGCTAGCTATAGCTACTGTCATTTAATTTGGCCTTGGTTAATTAGTTCCTTGATTAATGTATTTGTTTGTATGACCAAATCATACATACATGTATGTCCATTAATTTTTGCATGCAAATGGAAGTATATACATATATCTCCAAATATATGTCAATAATTTTTTTGTTGCAAAAA]
[+] EMBL C27997 [ AGCCACTACACTAGCACACACTACATACAATCTTCTTCTTCTTCTTCTTCTTGAGTTCTTGGAGGTCGAGGGGTGGGTCATCAATGGCGGAGGTGGAGGTGAGGGTGAGGCAGGAGCAGGTGGCGGAGTTCAGGGAGACGTTCGCGTTCTTCGACAAGGACGGGGACGGGTGCATCACGCTGGAGGAGCTGGACACGGTGGTGCGGTCGCTGGGGCAGACGCCGACGAGGGAGGAGCTCGCCGAGATGATCCGCGACGTCGACGTCGACGGCAACGGCACCATCTGAGTTCGCCGAGTTCCTCTGCNCTCAT ]
[+] EMBL AU085804 [ CGCCGACGAGGGAGNAGCTCGCCGAGATGATCCGCGACGTCGACGTCGACGGCAACGGCACCATC GAGTTCGCCGAGTTCCTC GCCCTCATGGCCCCGCAAGGCCTCGCGCGGCGGCGAGAACGGCGGAGGAGGAGACGACTCCGGCGACGCCGCCGACGAGGAGCTCCGGGAGGCGTTCAAGGTGTTCGACAAGGACCAGGACGGGCTCATCTCCGCCGCCGAG TCCGCCACGTGATGATCAGCCTCGGCGAGAAGCTCACCGACGAGGAGGTGGAGCAGATGATCCGGGAGGCCGACCTCGACGGCGACGGCCAGGTCAACTTCGACGAGTTCGTCAGGATGATGATGCTCTCCGACCAATAATTAATCTCCTCTCTACTATATATCCAAAATCAATATATCTCTCTCCATTTCATTTTGTTTTTTTTCGATCTCTTCTTTCTTTCTTTCTTCCCAATTTGATTAGTTACCTAACTAATTAAGGTAGCTAGCTATAGCTACTGTCATTTAATTTGGCCTTGGTTAATTAGTTCCTTGATTAATGTATTTGTTTGTATGACCAAATCATACATACATGTATGTCCATTAATTTTTGCATGCAAATGGAAGTATATACATATATCTCCAAATATATGTCAATAATTTTTTTGTTGCAAAAA]
consensusID : consensus_6143#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 703 fasta sequence
[CATTAACGATCCCGTGAAGGAAGATGCGGAGCGGCGGACCGGGCGACATGTGTTGGGATAATGGGGAATTAGTGGTTATTATGGGCAATGCGACCGCGATTTGGGGTCGGGGGGGAGAATGGTACTGAGTCTGAATGCATGTGCATATGCCTAATTGATTTAGTGTACGTGATACGGGTGAACGGATAGAAGAGCGGTACCGCACGAGAATCGGTAGGGGAACGCGAAAGAGATACGGGATTATAGGAACGCTGGGGGTAGGGAATGTCGACGCCTACGCCATCCCCCCCCCTTCACCTCCTTTTCTGACCGGCCCGACGGGCAATGGCGACGGGAAGTGGTCGCGAAGCGAATCGTGCGGGGGGATACTACCGCCACGACCGTTTGGATAGGGGGACGAGGGCAGAGAACGACGTCCCGTGCGCAATAATTAATCTCCTCTCTACTATATATCCAAAATCAATATATCTCTCTCCATTTCATTTTGTTTTTTTTCGATCTCTTCTTTCTTTCTTTCTTCCCAGTTTGATTAGTTACCTAACTAATTAAGGTAGCTAGCTATAGCTACTGTCATTTAATTTGGCCTTGGTTAATTAGTTCCTTGATTAATGTATTTGTTTGTATGACCAAATCATACATACATGTATGTCCATTAATTTTTGCATGCAAATGGAAGTATATACATATATCAAAAAAAAAAAAA]
[-] EMBL CA761633 [CATTAACGATCCCGTGAAGGAAGATGCGGAGCGGCGGACCGGGCGACATGTGTTGGGATAATGGGGAATTAGTGGTTATTATGGGCAATGCGACCGCGATTTGGGGTCGGGGGGGAGAATGGTACTGAGTCTGAATGCATGTGCATATGCCTAATTGATTTAGTGTACGTGATACGGGTGAACGGATAGAAGAGCGGTACCGCACGAGAATCGGTAGGGGAACGCGAAAGAGATACGGGATTATAGGAACGCTGGGGGTAGGGAATGTCGACGCCTACGCCATCCCCCCCCCTTCACCTCCTTTTCTGACCGGCCCGACGGGCAATGGCGACGGGAAGTGGTCGCGAAGCGAATCGTGCGGGGGGATACTACCGCCACGACCGTTTGGATAGGGGGACGAGGGCAGAGAACGACGTCCCGTGCGCAATAATTAATCTCCTCTCTACTATATATCCAAAATCAATATATCTCTCTCCATTTCATTTTGTTTTTTTTCGATCTCTTCTTTCTTTCTTTCTTCCCAGTTTGATTAGTTACCTAACTAATTAAGGTAGCTAGCTATAGCTACTGTCATTTAATTTGGCCTTGGTTAATTAGTTCCTTGATTAATGTATTTGTTTGTATGACCAAATCATACATACATGTATGTCCATTAATTTTTGCATGCAAATGGAAGTATATACATATATCAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6143#0 CGCCCACGCGTCCGCTTCATTCCAAGCCACTACACTAGCACACACTACATACAATCTTCT 60
consensus_6143#1 ------------------------------------------------------------
consensus_6143#0 TCTTCTTCTTCTTCTTGAGTTCTTGGAGGTCGAGGGGTGGGTCATCAATGGCGGAGGTGG 120
consensus_6143#1 ------------------------------------------------------------
consensus_6143#0 AGGTGAGGGTGAGGCAGGAGCAGGTGGCGGAGTTCAGGGAGACGTTCGCGTTCT--TCGA 178
consensus_6143#1 ------------------------------------------CATTAACGATCCCGTGAA 18
* ** ** ** * *
consensus_6143#0 CAAGGACGGGGACGGGTGCATCACGCTGGAGGAGCTGGACACGGTGGTGCGGTCGCTGGG 238
consensus_6143#1 GGAAGATGCGGAGCGGCGGACCGGGCGACATGTGTTGG----GATAATGGGGAATTAGTG 74
* ** * *** ** * * * ** * * * *** * * ** ** * *
consensus_6143#0 GCAGACGCCGACGAGGGAGGAGCTCGCCGAGATGATCCGCGACGTCGACGTCGACGGCAA 298
consensus_6143#1 GTTATTATGGGCAATGCGACCGCGATTTGGGGTCGGGGGGGAGAATGGTACTGAGTCTGA 134
* * * * * ** * * * * ** * ** *
consensus_6143#0 CGGCACCATCGAGTTCGCCGAGTTCCTCGCCCTCATGGCCCGCAAGGCCTCGCGCGGCGG 358
consensus_6143#1 ATGCAT--GTGCATATGCCTAATTGATTTAGTGTACGTGATACGGG----TGAACGGATA 188
*** * * *** * ** * * * * * * ***
consensus_6143#0 CGAGAACGGCGGAGGAGGAGA-CGACTCCGGCGACGCCGCCGACG-AGGAGCTCCGGGAG 416
consensus_6143#1 GAAGAGCGGTACCGCACGAGAATCGGTAGGGGAACGCGAAAGAGATACGGGATTATAGGA 248
*** *** * * **** * ** **** ** * * * * *
consensus_6143#0 GCGTTCAAGGTGTTCGACAAGGACCAGGACGGGCTCATCTCCGCCGCCGAGCTCCGCCAC 476
consensus_6143#1 ACGCTGGGGGTA---GGGAATGTCGACGCCTACGCCATCCCCCCCCCTTCACCTCCTT-- 303
** * *** * ** * * * * * **** ** ** * * *
consensus_6143#0 GTGATGATCAGCCTCGGCGAGAAGCTCACCGACGAGGAGGTGGAGCAGA-TGATCCGGGA 535
consensus_6143#1 -TTCTGACCGGCC-CGACGGGCAAT--GGCGACGGGAAGTGGTCGCGAAGCGAATCGTGC 359
* *** * *** ** ** * * ***** * ** * ** * ** ** *
consensus_6143#0 GGCCGACCTCGACGGCGACGGCCAGGTCAACTTCGACGAGTTCGTCAGGATGATGATGCT 595
consensus_6143#1 GGGGGGATACTACCGCCACGACCGTTTGGA--TAGGGGGACGAGGGCAGAGAACGACGTC 417
** * * ** ** *** ** * * * * * * ** * ** *
consensus_6143#0 CTCCGACCAATAATTAATCTCCTCTCTACTATATATCCAAAATCAATATATCTCTCTCCA 655
consensus_6143#1 CCGTGCGCAATAATTAATCTCCTCTCTACTATATATCCAAAATCAATATATCTCTCTCCA 477
* * *****************************************************
consensus_6143#0 TTTCATTTTGTTTTTTTTCGATCTCTTCTTTCTTTCTTTCTTCCCAATTTGATTAGTTAC 715
consensus_6143#1 TTTCATTTTGTTTTTTTTCGATCTCTTCTTTCTTTCTTTCTTCCCAGTTTGATTAGTTAC 537
********************************************** *************
consensus_6143#0 CTAACTAATTAAGGTAGCTAGCTATAGCTACTGTCATTTAATTTGGCCTTGGTTAATTAG 775
consensus_6143#1 CTAACTAATTAAGGTAGCTAGCTATAGCTACTGTCATTTAATTTGGCCTTGGTTAATTAG 597
************************************************************
consensus_6143#0 TTCCTTGATTAATGTATTTGTTTGTATGACCAAATCATACATACATGTATGTCCATTAAT 835
consensus_6143#1 TTCCTTGATTAATGTATTTGTTTGTATGACCAAATCATACATACATGTATGTCCATTAAT 657
************************************************************
consensus_6143#0 TTTTGCATGCAAATGGAAGTATATACATATATCTCCAAATATATGTCAATAATTTTTTTG 895
consensus_6143#1 TTTTGCATGCAAATGGAAGTATATACATATATCAAAAAAAAAAAAA-------------- 703
********************************* *** * *
consensus_6143#0 TTGCAAAAA 904
consensus_6143#1 ---------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||