These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6143#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 904 fasta sequence [CGCCCACGCGTCCGCTTCATTCCAAGCCACTACACTAGCACACACTACATACAATCTTCTTCTTCTTCTTCTTCTTGAGTTCTTGGAGGTCGAGGGGTGGGTCATCAATGGCGGAGGTGGAGGTGAGGGTGAGGCAGGAGCAGGTGGCGGAGTTCAGGGAGACGTTCGCGTTCTTCGACAAGGACGGGGACGGGTGCATCACGCTGGAGGAGCTGGACACGGTGGTGCGGTCGCTGGGGCAGACGCCGACGAGGGAGGAGCTCGCCGAGATGATCCGCGACGTCGACGTCGACGGCAACGGCACCATC-GAGTTCGCCGAGTTCCTC-GCCCTCATGG-CCCGCAAGGCCTCGCGCGGCGGCGAGAACGGCGGAGGAGGAGACGACTCCGGCGACGCCGCCGACGAGGAGCTCCGGGAGGCGTTCAAGGTGTTCGACAAGGACCAGGACGGGCTCATCTCCGCCGCCGAGCTCCGCCACGTGATGATCAGCCTCGGCGAGAAGCTCACCGACGAGGAGGTGGAGCAGATGATCCGGGAGGCCGACCTCGACGGCGACGGCCAGGTCAACTTCGACGAGTTCGTCAGGATGATGATGCTCTCCGACCAATAATTAATCTCCTCTCTACTATATATCCAAAATCAATATATCTCTCTCCATTTCATTTTGTTTTTTTTCGATCTCTTCTTTCTTTCTTTCTTCCCAATTTGATTAGTTACCTAACTAATTAAGGTAGCTAGCTATAGCTACTGTCATTTAATTTGGCCTTGGTTAATTAGTTCCTTGATTAATGTATTTGTTTGTATGACCAAATCATACATACATGTATGTCCATTAATTTTTGCATGCAAATGGAAGTATATACATATATCTCCAAATATATGTCAATAATTTTTTTGTTGCAAAAA] [+] EMBL AB060552 [CGCCCACGCGTCCGCTTCATTCCAAGCCACTACACTAGCACACACTACATACAATCTTCTTCTTCTTCTTCTTCTTGAGTTCTTGGAGGTCGAGGGGTGGGTCATCAATGGCGGAGGTGGAGGTGAGGGTGAGGCAGGAGCAGGTGGCGGAGTTCAGGGAGACGTTCGCGTTCTTCGACAAGGACGGGGACGGGTGCATCACGCTGGAGGAGCTGGACACGGTGGTGCGGTCGCTGGGGCAGACGCCGACGAGGGAGGAGCTCGCCGAGATGATCCGCGACGTCGACGTCGACGGCAACGGCACCATC GAGTTCGCCGAGTTCCTC GCCCTCATGG CCCGCAAGGCCTCGCGCGGCGGCGAGAACGGCGGAGGAGGAGACGACTCCGGCGACGCCGCCGACGAGGAGCTCCGGGAGGCGTTCAAGGTGTTCGACAAGGACCAGGACGGGCTCATCTCCGCCGCCGAGCTCCGCCACGTGATGATCAGCCTCGGCGAGAAGCTCACCGACGAGGAGGTGGAGCAGATGATCCGGGAGGCCGACCTCGACGGCGACGGCCAGGTCAACTTCGACGAGTTCGTCAGGATGATGATGCTCTCCGACCAATAATTAATCTCCTCTCTACTATATATCCAAAATCAATATATCTCTCTCCATTTCATTTTGTTTTTTTTCGATCTCTTCTTTCTTTCTTTCTTCCCAATTTGATTAGTTACCTAACTAATTAAGGTAGCTAGCTATAGCTACTGTCATTTAATTTGGCCTTGGTTAATTAGTTCCTTGATTAATGTATTTGTTTGTATGACCAAATCATACATACATGTATGTCCATTAATTTTTGCATGCAAATGGAAGTATATACATATATCTCCAAATATATGTCAATAATTTTTTTGTTGCAAAAA] [+] EMBL C27997 [ AGCCACTACACTAGCACACACTACATACAATCTTCTTCTTCTTCTTCTTCTTGAGTTCTTGGAGGTCGAGGGGTGGGTCATCAATGGCGGAGGTGGAGGTGAGGGTGAGGCAGGAGCAGGTGGCGGAGTTCAGGGAGACGTTCGCGTTCTTCGACAAGGACGGGGACGGGTGCATCACGCTGGAGGAGCTGGACACGGTGGTGCGGTCGCTGGGGCAGACGCCGACGAGGGAGGAGCTCGCCGAGATGATCCGCGACGTCGACGTCGACGGCAACGGCACCATCTGAGTTCGCCGAGTTCCTCTGCNCTCAT ] [+] EMBL AU085804 [ CGCCGACGAGGGAGNAGCTCGCCGAGATGATCCGCGACGTCGACGTCGACGGCAACGGCACCATC GAGTTCGCCGAGTTCCTC GCCCTCATGGCCCCGCAAGGCCTCGCGCGGCGGCGAGAACGGCGGAGGAGGAGACGACTCCGGCGACGCCGCCGACGAGGAGCTCCGGGAGGCGTTCAAGGTGTTCGACAAGGACCAGGACGGGCTCATCTCCGCCGCCGAG TCCGCCACGTGATGATCAGCCTCGGCGAGAAGCTCACCGACGAGGAGGTGGAGCAGATGATCCGGGAGGCCGACCTCGACGGCGACGGCCAGGTCAACTTCGACGAGTTCGTCAGGATGATGATGCTCTCCGACCAATAATTAATCTCCTCTCTACTATATATCCAAAATCAATATATCTCTCTCCATTTCATTTTGTTTTTTTTCGATCTCTTCTTTCTTTCTTTCTTCCCAATTTGATTAGTTACCTAACTAATTAAGGTAGCTAGCTATAGCTACTGTCATTTAATTTGGCCTTGGTTAATTAGTTCCTTGATTAATGTATTTGTTTGTATGACCAAATCATACATACATGTATGTCCATTAATTTTTGCATGCAAATGGAAGTATATACATATATCTCCAAATATATGTCAATAATTTTTTTGTTGCAAAAA] consensusID : consensus_6143#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 703 fasta sequence [CATTAACGATCCCGTGAAGGAAGATGCGGAGCGGCGGACCGGGCGACATGTGTTGGGATAATGGGGAATTAGTGGTTATTATGGGCAATGCGACCGCGATTTGGGGTCGGGGGGGAGAATGGTACTGAGTCTGAATGCATGTGCATATGCCTAATTGATTTAGTGTACGTGATACGGGTGAACGGATAGAAGAGCGGTACCGCACGAGAATCGGTAGGGGAACGCGAAAGAGATACGGGATTATAGGAACGCTGGGGGTAGGGAATGTCGACGCCTACGCCATCCCCCCCCCTTCACCTCCTTTTCTGACCGGCCCGACGGGCAATGGCGACGGGAAGTGGTCGCGAAGCGAATCGTGCGGGGGGATACTACCGCCACGACCGTTTGGATAGGGGGACGAGGGCAGAGAACGACGTCCCGTGCGCAATAATTAATCTCCTCTCTACTATATATCCAAAATCAATATATCTCTCTCCATTTCATTTTGTTTTTTTTCGATCTCTTCTTTCTTTCTTTCTTCCCAGTTTGATTAGTTACCTAACTAATTAAGGTAGCTAGCTATAGCTACTGTCATTTAATTTGGCCTTGGTTAATTAGTTCCTTGATTAATGTATTTGTTTGTATGACCAAATCATACATACATGTATGTCCATTAATTTTTGCATGCAAATGGAAGTATATACATATATCAAAAAAAAAAAAA] [-] EMBL CA761633 [CATTAACGATCCCGTGAAGGAAGATGCGGAGCGGCGGACCGGGCGACATGTGTTGGGATAATGGGGAATTAGTGGTTATTATGGGCAATGCGACCGCGATTTGGGGTCGGGGGGGAGAATGGTACTGAGTCTGAATGCATGTGCATATGCCTAATTGATTTAGTGTACGTGATACGGGTGAACGGATAGAAGAGCGGTACCGCACGAGAATCGGTAGGGGAACGCGAAAGAGATACGGGATTATAGGAACGCTGGGGGTAGGGAATGTCGACGCCTACGCCATCCCCCCCCCTTCACCTCCTTTTCTGACCGGCCCGACGGGCAATGGCGACGGGAAGTGGTCGCGAAGCGAATCGTGCGGGGGGATACTACCGCCACGACCGTTTGGATAGGGGGACGAGGGCAGAGAACGACGTCCCGTGCGCAATAATTAATCTCCTCTCTACTATATATCCAAAATCAATATATCTCTCTCCATTTCATTTTGTTTTTTTTCGATCTCTTCTTTCTTTCTTTCTTCCCAGTTTGATTAGTTACCTAACTAATTAAGGTAGCTAGCTATAGCTACTGTCATTTAATTTGGCCTTGGTTAATTAGTTCCTTGATTAATGTATTTGTTTGTATGACCAAATCATACATACATGTATGTCCATTAATTTTTGCATGCAAATGGAAGTATATACATATATCAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6143#0 CGCCCACGCGTCCGCTTCATTCCAAGCCACTACACTAGCACACACTACATACAATCTTCT 60 consensus_6143#1 ------------------------------------------------------------ consensus_6143#0 TCTTCTTCTTCTTCTTGAGTTCTTGGAGGTCGAGGGGTGGGTCATCAATGGCGGAGGTGG 120 consensus_6143#1 ------------------------------------------------------------ consensus_6143#0 AGGTGAGGGTGAGGCAGGAGCAGGTGGCGGAGTTCAGGGAGACGTTCGCGTTCT--TCGA 178 consensus_6143#1 ------------------------------------------CATTAACGATCCCGTGAA 18 * ** ** ** * * consensus_6143#0 CAAGGACGGGGACGGGTGCATCACGCTGGAGGAGCTGGACACGGTGGTGCGGTCGCTGGG 238 consensus_6143#1 GGAAGATGCGGAGCGGCGGACCGGGCGACATGTGTTGG----GATAATGGGGAATTAGTG 74 * ** * *** ** * * * ** * * * *** * * ** ** * * consensus_6143#0 GCAGACGCCGACGAGGGAGGAGCTCGCCGAGATGATCCGCGACGTCGACGTCGACGGCAA 298 consensus_6143#1 GTTATTATGGGCAATGCGACCGCGATTTGGGGTCGGGGGGGAGAATGGTACTGAGTCTGA 134 * * * * * ** * * * * ** * ** * consensus_6143#0 CGGCACCATCGAGTTCGCCGAGTTCCTCGCCCTCATGGCCCGCAAGGCCTCGCGCGGCGG 358 consensus_6143#1 ATGCAT--GTGCATATGCCTAATTGATTTAGTGTACGTGATACGGG----TGAACGGATA 188 *** * * *** * ** * * * * * * *** consensus_6143#0 CGAGAACGGCGGAGGAGGAGA-CGACTCCGGCGACGCCGCCGACG-AGGAGCTCCGGGAG 416 consensus_6143#1 GAAGAGCGGTACCGCACGAGAATCGGTAGGGGAACGCGAAAGAGATACGGGATTATAGGA 248 *** *** * * **** * ** **** ** * * * * * consensus_6143#0 GCGTTCAAGGTGTTCGACAAGGACCAGGACGGGCTCATCTCCGCCGCCGAGCTCCGCCAC 476 consensus_6143#1 ACGCTGGGGGTA---GGGAATGTCGACGCCTACGCCATCCCCCCCCCTTCACCTCCTT-- 303 ** * *** * ** * * * * * **** ** ** * * * consensus_6143#0 GTGATGATCAGCCTCGGCGAGAAGCTCACCGACGAGGAGGTGGAGCAGA-TGATCCGGGA 535 consensus_6143#1 -TTCTGACCGGCC-CGACGGGCAAT--GGCGACGGGAAGTGGTCGCGAAGCGAATCGTGC 359 * *** * *** ** ** * * ***** * ** * ** * ** ** * consensus_6143#0 GGCCGACCTCGACGGCGACGGCCAGGTCAACTTCGACGAGTTCGTCAGGATGATGATGCT 595 consensus_6143#1 GGGGGGATACTACCGCCACGACCGTTTGGA--TAGGGGGACGAGGGCAGAGAACGACGTC 417 ** * * ** ** *** ** * * * * * * ** * ** * consensus_6143#0 CTCCGACCAATAATTAATCTCCTCTCTACTATATATCCAAAATCAATATATCTCTCTCCA 655 consensus_6143#1 CCGTGCGCAATAATTAATCTCCTCTCTACTATATATCCAAAATCAATATATCTCTCTCCA 477 * * ***************************************************** consensus_6143#0 TTTCATTTTGTTTTTTTTCGATCTCTTCTTTCTTTCTTTCTTCCCAATTTGATTAGTTAC 715 consensus_6143#1 TTTCATTTTGTTTTTTTTCGATCTCTTCTTTCTTTCTTTCTTCCCAGTTTGATTAGTTAC 537 ********************************************** ************* consensus_6143#0 CTAACTAATTAAGGTAGCTAGCTATAGCTACTGTCATTTAATTTGGCCTTGGTTAATTAG 775 consensus_6143#1 CTAACTAATTAAGGTAGCTAGCTATAGCTACTGTCATTTAATTTGGCCTTGGTTAATTAG 597 ************************************************************ consensus_6143#0 TTCCTTGATTAATGTATTTGTTTGTATGACCAAATCATACATACATGTATGTCCATTAAT 835 consensus_6143#1 TTCCTTGATTAATGTATTTGTTTGTATGACCAAATCATACATACATGTATGTCCATTAAT 657 ************************************************************ consensus_6143#0 TTTTGCATGCAAATGGAAGTATATACATATATCTCCAAATATATGTCAATAATTTTTTTG 895 consensus_6143#1 TTTTGCATGCAAATGGAAGTATATACATATATCAAAAAAAAAAAAA-------------- 703 ********************************* *** * * consensus_6143#0 TTGCAAAAA 904 consensus_6143#1 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||