|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6144#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 891 fasta sequence
[GCCGCTCTCCCCCCACTCCGGCGTCGCTCTCCATCCCCCCACCACCGCCGGCGGCGCCGCTCCCCCTCACCCCCAAGGCCAAGTCGTAAGCCAGCCGTCGAGGCCATGTCGTCGTCTTCCTCCTCCTTCCCGACCTCTCGCTCCCCTTTCCCCGCCGGCGCCGGCGCCGGCACCAGCGGGGGCGGAGGAGGAGGAGGAGGGGGCTCCGGCGGCGGAGGTGGGGGTGGAAGATGGAGCGGCGTGCGCCCCTGGGGCTCCAGCGGCGGCACGTCGGTGTCGTCGTCGGGGAAGCGGATTCAGAAGGAGCTGATGGACCTCAACGCCTCCGACTGCTCCGCCGGCCCTAAGGGCGACAACCTCTACCACTGGCTCTCCACCATCATCGGACCTCAGGGATCTCCGTATGAAGGAGGGATATTTTTCCTCGATATTGTATTCCCAATTGACTATCCGTTTAAACCTCCCATGGTAACTTTCAAGACAAGGATTTATCACTGCAATGTTGACTCCACTGGTAACTTGAGTATGGACATTTTAAGGGAAGGATGGAGTCCTGCTTTAACTATTTCAAAGGTGCTACTTGCCATTAAAGCCATCATAACAAACCCAGATCCATACTGCCCACTTGTGCCGAGCATTGGACATTTATACTTGACTGATAGAACTAAGCATGATGAAATAGCTGCGGAGTGGACGATGAGGTTTGCAAGATAGGGAGTTCCATCTGCAGCTAAGCAAGATCACTAACTCCGTAAATGAATATATTTGGTGTACCCTGAGATGTACAATGTTGGGAAAAGATCAATACTTTGTTTAGGTTGACTGTGACATAAGATGTACCTGTGCATTTTATATTAGACAATTATTATGTTGTTAGCTTTTAGGTGGCAG]
[+] EMBL AK111080 [GCCGCTCTCCCCCCACTCCGGCGTCGCTCTCCATCCCCCCACCACCGCCGGCGGCGCCGCTCCCCCTCACCCCCAAGGCCAAGTCGTAAGCCAGCCGTCGAGGCCATGTCGTCGTCTTCCTCCTCCTTCCCGACCTCTCGCTCCCCTTTCCCCGCCGGCGCCGGCGCCGGCACCAGCGGGGGCGGAGGAGGAGGAGGAGGGGGCTCCGGCGGCGGAGGTGGGGGTGGAAGATGGAGCGGCGTGCGCCCCTGGGGCTCCAGCGGCGGCACGTCGGTGTCGTCGTCGGGGAAGCGGATTCAGAAGGAGCTGATGGACCTCAACGCCTCCGACTGCTCCGCCGGCCCTAAGGGCGACAACCTCTACCACTGGCTCTCCACCATCATCGGACCTCAGGGATCTCCGTATGAAGGAGGGATATTTTTCCTCGATATTGTATTCCCAATTGACTATCCGTTTAAACCTCCCATGGTAACTTTCAAGACAAGGATTTATCACTGCAATGTTGACTCCACTGGTAACTTGAGTATGGACATTTTAAGGGAAGGATGGAGTCCTGCTTTAACTATTTCAAAGGTGCTACTTGCCATTAAAGCCATCATAACAAACCCAGATCCATACTGCCCACTTGTGCCGAGCATTGGACATTTATACTTGACTGATAGAACTAAGCATGATGAAATAGCTGCGGAGTGGACGATGAGGTTTGCAAGATAGGGAGTTCCATCTGCAGCTAAGCAAGATCACTAACTCCGTAAATGAATATATTTGGTGTACCCTGAGATGTACAATGTTGGGAAAAGATCAATACTTTGTTTAGGTTGACTGTGACATAAGATGTACCTGTGCATTTTATATTAGACAATTATTATGTTGTTAGCTTTTAGGTGGCAG]
consensusID : consensus_6144#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 698 fasta sequence
[TTTTTTTTTTTTTTTCAAGTTTGGAATTAGGGTGTGGAGTGTAGAGTGAACTAGTCTTATGACCACCTTCACTTTGTTGATCTAATGCAGTGCTCATCTTGTAGGATCTCCGTATGAAGGAGGGATATTTTTCCTCGATATTGTATTCCCAATTGACTATCCGTTTAAACCTCCCATGGTAAGAACTAAGAATTAGCTTC-TTTTTTTTTTCTGTTTGCTTAAATGGGCTGTTGGTTATGAGGTGTCTGGCTTTCTACGAGATCATATAGAAGCTTAAGTTGTAACTTGACATTTTCTCTCCTTGTCTGTGTGCATTCTACCTAATGCTGTGATTCATGAGTGATCATATCGCTGTTATTGGAACAAATATCTAGAATAAATATGGCATTCCCTTCAGTAACTATTGATAGACGACTATTGATTTACCGCGTGGAAGTGTGGTTAAGGTAACACGGGAAATGCTTGCATCCAAAGAAATGTTTTTAAGAGACATGCGCATGTCTAAAATCTTGAAGAAGTGGAATAGAAATTCAAATAGGATGGATAATTGGTTGGGAT-ATAATTGTTGTATAGCTAGTTCTACTTCACTATGTGAACAGGGTATTACAAAAGTGATGAACATTGGTATGTTTAGTAAATGCATAGGGAATTTTGATTCGAAAGTCTACCTTCACCGGACTTCTTTTATGTTCTTCAAA]
[+] EMBL CA762609 [TTTTTCTTTTTTTTTCAAGTTTGGAATTAGGGTGTGGAGTGTAGAGTGAACTAGTCTTATGACCACCTTCACTTTGTTGATCTAATGCAGTGCTCATCTTGTAGGATCTCCGTATGAAGGAGGGATATTTTTCCTCGATATTGTATTCCCAATTGACTATCCGTTTAAACCCCCCATGGTAAGAACTAAGAATTAGCTTCTTTTTTTTTTTCTGTTTGCTTAAATGGGCTGTTGGTTATGAGGTGTCTGGCTTTCTACGAGATCATATAGAAGCTTAAGTTGTAACTTGACATTTTCTCTCCTTGTCTGTGTGCATTCTACCTAATGCTGTGATTCATGAGTGATCATATCGCTGTTATTGGAACAAATATCTAGAATAAATATGGCATTCCCTTCAGTAACTATTGATAGACGACTATTGATTTACCGCGTGGAAGTGTGGTTAAGGTAACACGGGAAATGCTTGCATCCAAAGAAATGTTTTTAAGAGACATGCGCATGTCTAAAATCTTGAAGAAGTGGAATAGAAATTCAAATAGGATGGATAATTGGTTGGGATAATAATTGTTGNATAGCTAGTTCTACTTCACTATGTGAACAGGGTATTACAAAAGTGATGAACATTGGTATGCTTAGTAAATGCATAGGGTATTTTGGTTTGAAAGTCTACCTTCA ]
[+] EMBL CA762608 [ TTTTTTTTTTCAAGTTTGGAATTAGGGTGTGGAGTGTAGAGTGAACTAGTCTTATGACCACCTTCACTTTGTTGATCTAATGCAGTGCTCATCTTGTAGGATCTCCGTATGAAGGAGGGATATTTTTCCTCGATATTGTATTCCCAATTGACTATCCGTTTAAACCTCCCATGGTAAGAACTAAGAATTAGCTTC TTTTTTTTTTCTGTTTGCTTAAATGGGCTGTTGGTTATGAGGTGTCTGGCTTTCTACGAGATCATATAGAAGCTTAAGTTGTAACTTGACATTTTCTCTCCTTGTCTGTGTGCATTCTACCTAATGCTGTGATTCATGAGTGATCATATCGCTGTTATTGGAACAAATATCTAGAATAAATATGGCATTCCCTTCAGTAACTATTGATAGACGACTATTGATTTACCGCGTGGAAGTGTGGTTAAGGTAACACGGGAAATGCTTGCATCCAAAGAAATGTTTTTAAGAGACATGCGCATGTCTAAAATCTTGAAGAAGTGGAATAGAAATTCAAATAGGATGGATAATTGGTTGGGAT ATAATTGTTGTATAGCTAGTTCTACTTCACTATGTGAACAGGGTATTACAAAAGTGATGAACATTGGTATGTTTAGTAAATGCATAGGGAATTTTGATTCGAAAGTCTACCTTCACCGGACTTCTTTTATGTTCTTCAAA]
[+] EMBL CA762607 [ TTTTTTTTTTCAAGTTTGGAATTAGGGTGTGGAGTGTAGAGTGAACTAGTCTTATGACCACCTTCACTTTGTTGATCTAATGCAGTGCTCATCTTGTAGGATCTCCGTATGAAGGAGGGATATTTTTCCTCGATATTGTATTCCCAATTGACTATCCGTTTAAACCTCCCATGGTAAGAACTAAGAATTAGCTTC TTTTTTTTTTCTGTTTGCTTAAATGGGCTGTTGGTTATGAGGTGTCTGGCTTTCTACGAGATCATATAGAAGCTTAAGTTGTAACTTGACATTTTCTCTCCTTGTCTGTGTGCATTCTACCTAATGCTGTGATTCATGAGTGATCATATCGCTGTTATTGGAACAAATATCTAGAATAAATATGGCATTCCCTTCAGTAACTATTGATAGACGACTATTGATTTACCGCGTGGAAGTGTGGTTAAGGTAACACGGGAAATGCTTGCATCCAAAGAAATGTTTTTAAGAGACATGCGCATGTCTAAAATCTTGAAGAAGTGGAATAGAAATTCAAATAGGATGGATAATTGGTTGGGAT ATAATTGTTGTATAGCTAGTTCTACTTCACTATGTGAACAGGGTATTACAAAAGTGATGAACATTGGTATGTTTAGTAAATGCATAGGGAATTTTGATTCGAAAGTCTACCTTCACCGGACTTCTTTTATGTTCTTCAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6144#0 GCCGCTCTCCCCCCACTCCGGCGTCGCTCTCCATCCCCCCACCACCGCCGGCGGCGCCGC 60
consensus_6144#1 ------------------------------------------------------------
consensus_6144#0 TCCCCCTCACCCCCAAGGCCAAGTCGTAAGCCAGCCGTCGAGGCCATGTCGTCGTCTTCC 120
consensus_6144#1 ------------------------------------------------------------
consensus_6144#0 TCCTCCTTCCCGACCTCTCGCTCCCCTTTCCCCGCCGGCGCCGGCGCCGGCACCAGCGGG 180
consensus_6144#1 --------------------------TTTTTTTTTTTTTTTCAAGTTTGGAATTAG--GG 32
*** * ** * ** **
consensus_6144#0 GGCGGAGGAGGAGGAGGAGGGGGCTC-CGGCGGCGGAGGTGGGGGTGGAAGATGGAGCGG 239
consensus_6144#1 TGTGGAGTGTAGAGTGAACTAGTCTTATGACCACCTTCACTTTGTTG--ATCTAATGCAG 90
* **** * * * * ** * * * * ** * * ** *
consensus_6144#0 CGTGCGCCCCTGGGGCTCCAGCGGCGGCACGTCGGTGTCGTCGTCGGGGAAGCGGATTCA 299
consensus_6144#1 TGCTCATCTTGTAGGATCTCCGTATGAAGGAGGGATATT-TTTCCTCGATATTGTATTCC 149
* * * ** ** * * * * * * * * * ****
consensus_6144#0 GAAGGAGCTGATGGACCTCAACGCCTCCGACTGCTCCGCCGGCCCTAAGGGCGACAACCT 359
consensus_6144#1 CAATTGACT-ATCCGTTTAAACCTCCCATGGTAAGA-ACTAAGAATTAGCTTCTTTTTTT 207
** ** ** * *** * * * * * ** *
consensus_6144#0 CTACCACTGGCTCTCCACCATCATCGGACCTCAGGGATCTCCGTATGAAGGAGGGATATT 419
consensus_6144#1 TTTCTGTTTGCTTAAATGGGCTGTTGGTTATGAGGTGTCTGGCTTTCTACGAGA-----T 262
* * * *** * ** * *** *** * * * *** *
consensus_6144#0 TTTCCTCGATATTGTATTCCCAATTGACTATCCGTTTAAACCTCCCATGGTAACTTTCAA 479
consensus_6144#1 CATATAGAAGCTTAAGTTGTAACTTGACATTTTCTCT---CCTTGTCTGTGTGCATTCTA 319
* * ** ** * ***** * * * *** ** * *** *
consensus_6144#0 GACAAGGATTTATCACTGCAATGTTGACTCCACTGGTAACTTGAGTATGGACATTTTAAG 539
consensus_6144#1 CCTAATGCTGTGATTCATGAGTGATCATATCGCTGTTA---TTGGAACAAATATCT-AGA 375
** * * * * * ** * * * *** ** * * * * ** * *
consensus_6144#0 GGAAGGATGGAGTCCTGCTTTAACTATTTCAAAGGTGCTACTTGCCATTAAAGCCATCAT 599
consensus_6144#1 ATAAATATGGCATTCC-CTTCAGTAACTATTGATAGACGACTATTGATTTACCGCGTGGA 434
** **** * * *** * * * * * *** *** * * *
consensus_6144#0 AACAAACCCAGATCCATACTGCCCACTTGTGCCGAGCATTGGACATTTATACTTGACTGA 659
consensus_6144#1 AGTGTGGTTAAGGTAACACGGGAAATGCTTGCATCCAAAGAAATGTTTTTA--------A 486
* * * ** * * *** * * *** ** *
consensus_6144#0 TAGAACTAAGCATGA-TGAAATAGCTGCGGAGTGGACGATGAGGTTTGCAAGATAGGGAG 718
consensus_6144#1 GAGACATGCGCATGTCTAAAATCTTGAAGAAGTGGAATA-GAAATTC---AAATAGGATG 542
*** * ***** * **** * ****** * ** ** * ***** *
consensus_6144#0 TTCCATCTGCAGCTAAGCAAGATCACTAACTCCGTAAATGAATATATTTGGTGTACCCTG 778
consensus_6144#1 GATAATTGGTTG--GGATATAATTGTTGTATAGCTAGTTCTACTTCACTA-TGTGAACAG 599
** * * * ** * * ** * * * * *** * *
consensus_6144#0 AGATGTACAATGTTGGGAAAAGATCAATACTTTGTTTAGGTTGACTGTGACATAAGATGT 838
consensus_6144#1 GGTATTACAAAAGTGATGAAC-ATTGGTATGTTTAGTAAATGCATAGGGAATTTTGATTC 658
* ***** ** ** ** ** ** ** * * * ** * ***
consensus_6144#0 ACCTGTGCATTTTATATTAGACAATTATTATGTTGTTAGCTTTTAGGTGGCAG 891
consensus_6144#1 GAAAGTCTACCTT-CACCGGACTTCTTTTATGTTCTTCAAA------------ 698
** * ** * *** * ******* **
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||