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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6150#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1985 fasta sequence
[GCGACACGCGCACCACCACCACCCCCCACCCACCTCCGCCGCGTTTCAAAATTCCCAAACCCCCCCTCCCCTCCCCTTCTCTCCTCCGCTGCGACGGCGGTGAGCGAGCCACCCCCGGAGTCGGCGCGGGCGGCGTGCTCCTCCTCCTCCTCCATCCATCCAAATAGTACCCCCCCCCCAATCTCCTCCCCGCTAAGCAAACCCCCCTAATCCTTCCTTAACCCCACCCTTCTTGCTTGCTTCGCTGCTGCTGCTTCGCTTGGTTGGTTGGTTATATTTAGTAGTCCGCGAGAAGAGTGGAGTTGTGACTAGGTGTGTGCTTACCACTGGGAGGAGGAGGAGGAGGAGGAGTTGTGGACTATAACGAGCGGGAATCGAGATTCCTTCGTGTTGGTGTTGTTGTTGTTGGTGGTGGTGGTGGTGCGTTGGTTGATTGGTCGGCGGCGGGAGGGATCCGGTTCTTGCGGATTCTTTACCGTTCTTGGTGAATCCGTGGAGAAGGCGGCGGGCCAAGATTGCTCGGAGGTGCTCGGCCGTGGCGGAGCGGTGGTCCGTCTATGGAACTTGCCGCCGCGGCGCCATGCCCCGCCCTGGAACTGAGGCTACCACCACCACCACTTCTGGCTGTGAAGCGGATTGTGGTGTCCCTGCTATGAAGGCGACGTTGATGATGATGAGTTGTCGGAGTCGGAGTCGGAGCGGGCGTGCTCACTGGATGCTGCTGCTCTTCTGCCTCCTCCTCGCCTTCCCTTCACATGGTCCTAGAGCCGTGGAAGCGTTTCCCGGGGGCTATGGGATAAACTACGGGAGAATAGCAAACAACATCCCTTCTCCGGATAAAGTAGTACAACTCCTGAGAGCTTCAAAGATAAGGAATGTCAAGATATACGATTCCGATCACAGCGTTCTTGATGCATTCAAGGGATCTGGGCTCAATCTGGTTATCGCCATCCCCAATGAGCTCGTGAAGGATTTTGCGGCGAATGAGAGCAGGTCGATCGACTGGCTGAATGAGAATGTGCAGCCCTATCTTCCTCAGACACGCATAGTTGGGATCACTGTGGGAAATGAGGTGCTGGGAGGTCAAGATACAAGCTTGGCCGAGCCCCTCGTTCAAGCTGTGAAGAATGTCTATAATGGACTCAAGAAATTTCACTTGCAAGACAAAATTGAGCTATTCACACCACACTCAGAAGCTGTTTTTGCTACTTCATATCCACCTTCTGCATGTGTTTTCAAGGAAGATGTCATGGTGTATATGAAACCACTGCTGGACTTCTTTCAACAAATTGGCTCACCTTTCTATGTCAACGCATATCCCTTTTTGGCCTACATAAGTGATCCAGAACATATTGACATTAATTACGCTCTCTTCAAGCCCAATCCTGGAATTGTTGACCCGAATACTAGTCTGCATTATGATAACATGTTCGATGCTCAGATAGATGCAGCTTATGCTGCTCTGCAGGCCGCTGGGTATAGAGACATGGAGGTCCGAGTAGCGGAGACTGGCTGGGCTTCTAGTGGAGATCAAACTGAGGCAGGAGCTTCAGTTGAGAATGCAAGGACTTACAATTTCAACCTCCGAAAGAGGCTCTTTCTGAGGAAAGGAACTCCTCTCAAGCCAAAGAGACCAGTCAAAGCATACATCTTTGCGTTGTTTAATGAGAATTCGAAGCCTGGACCTAGCTCGGAGAGGCACTATGGGCTGTTTAATGCTGATGGAAGGATTGCATATGATATTGGTTATGAGGGTCTATTACCTTCATCTGCACCCTCGTACTTCTTGTCTCTTAGGAAAATTCAAGCTGGGGGTTGGATTGTACACTATTCGGCTACAGTTATTTTATCTGTTTTCATTTTCTTAGCCTTAGTGACTTGATTACAGAATAGCACATCTGTATTGAACATACAACCGAGGTTAAGTGTTAGAACAATGTGATTGGGAATTTTACAATGAAAGATGAAATAATAGCTCCCTTCGC]
[+] EMBL AK121115 [GCGACACGCGCACCACCACCACCCCCCACCCACCTCCGCCGCGTTTCAAAATTCCCAAACCCCCCCTCCCCTCCCCTTCTCTCCTCCGCTGCGACGGCGGTGAGCGAGCCACCCCCGGAGTCGGCGCGGGCGGCGTGCTCCTCCTCCTCCTCCATCCATCCAAATAGTACCCCCCCCCCAATCTCCTCCCCGCTAAGCAAACCCCCCTAATCCTTCCTTAACCCCACCCTTCTTGCTTGCTTCGCTGCTGCTGCTTCGCTTGGTTGGTTGGTTATATTTAGTAGTCCGCGAGAAGAGTGGAGTTGTGACTAGGTGTGTGCTTACCACTGGGAGGAGGAGGAGGAGGAGGAGTTGTGGACTATAACGAGCGGGAATCGAGATTCCTTCGTGTTGGTGTTGTTGTTGTTGGTGGTGGTGGTGGTGCGTTGGTTGATTGGTCGGCGGCGGGAGGGATCCGGTTCTTGCGGATTCTTTACCGTTCTTGGTGAATCCGTGGAGAAGGCGGCGGGCCAAGATTGCTCGGAGGTGCTCGGCCGTGGCGGAGCGGTGGTCCGTCTATGGAACTTGCCGCCGCGGCGCCATGCCCCGCCCTGGAACTGAGGCTACCACCACCACCACTTCTGGCTGTGAAGCGGATTGTGGTGTCCCTGCTATGAAGGCGACGTTGATGATGATGAGTTGTCGGAGTCGGAGTCGGAGCGGGCGTGCTCACTGGATGCTGCTGCTCTTCTGCCTCCTCCTCGCCTTCCCTTCACATGGTCCTAGAGCCGTGGAAGCGTTTCCCGGGGGCTATGGGATAAACTACGGGAGAATAGCAAACAACATCCCTTCTCCGGATAAAGTAGTACAACTCCTGAGAGCTTCAAAGATAAGGAATGTCAAGATATACGATTCCGATCACAGCGTTCTTGATGCATTCAAGGGATCTGGGCTCAATCTGGTTATCGCCATCCCCAATGAGCTCGTGAAGGATTTTGCGGCGAATGAGAGCAGGTCGATCGACTGGCTGAATGAGAATGTGCAGCCCTATCTTCCTCAGACACGCATAGTTGGGATCACTGTGGGAAATGAGGTGCTGGGAGGTCAAGATACAAGCTTGGCCGAGCCCCTCGTTCAAGCTGTGAAGAATGTCTATAATGGACTCAAGAAATTTCACTTGCAAGACAAAATTGAGCTATTCACACCACACTCAGAAGCTGTTTTTGCTACTTCATATCCACCTTCTGCATGTGTTTTCAAGGAAGATGTCATGGTGTATATGAAACCACTGCTGGACTTCTTTCAACAAATTGGCTCACCTTTCTATGTCAACGCATATCCCTTTTTGGCCTACATAAGTGATCCAGAACATATTGACATTAATTACGCTCTCTTCAAGCCCAATCCTGGAATTGTTGACCCGAATACTAGTCTGCATTATGATAACATGTTCGATGCTCAGATAGATGCAGCTTATGCTGCTCTGCAGGCCGCTGGGTATAGAGACATGGAGGTCCGAGTAGCGGAGACTGGCTGGGCTTCTAGTGGAGATCAAACTGAGGCAGGAGCTTCAGTTGAGAATGCAAGGACTTACAATTTCAACCTCCGAAAGAGGCTCTTTCTGAGGAAAGGAACTCCTCTCAAGCCAAAGAGACCAGTCAAAGCATACATCTTTGCGTTGTTTAATGAGAATTCGAAGCCTGGACCTAGCTCGGAGAGGCACTATGGGCTGTTTAATGCTGATGGAAGGATTGCATATGATATTGGTTATGAGGGTCTATTACCTTCATCTGCACCCTCGTACTTCTTGTCTCTTAGGAAAATTCAAGCTGGGGGTTGGATTGTACACTATTCGGCTACAGTTATTTTATCTGTTTTCATTTTCTTAGCCTTAGTGACTTGATTACAGAATAGCACATCTGTATTGAACATACAACCGAGGTTAAGTGTTAGAACAATGTGATTGGGAATTTTACAATGAAAGATGAAATAATAGCTCCCTTCGC]
[-] EMBL CB483494 [ ATAGATGCAGCTTATGCTGCTCTGCAGGCCGCTGGGTATAGAGACATGGAGGTCCGAGTAGCGGAGACTGGCTGGGCTTCTAGTGGAGATCAAACTGAGGCAGGAACTTCAGTTGAGAATGCAAGGACTTAC ATTTCAACCTCCGAAAGAGGCTCTTTCTGAGGAAAGGAACTCCTCTCAAGCC AAGAGACCAGTC AAGCATACATCTTTGCGTTGTTTAAT ]
[+] EMBL CB685639 [ GCTCTGCAGGCCGCTGGGTATACATACATGGAGGTCCTAGCCTCGGAGACTGGCTGGGCTTCTATGGGAGATCCTACTGACGCAGGAGCTTCGGTTGAGAATGCAAGGACTTACAATTTCCTCCTCCGAAAGAGGCTCTTTCTGAGGAAAGGAACTCCTCTCTAGCCAAAGAGACCAGTCAAAGCATACGTCTTTGCGTGGTTTAATGACAATTCGAAGCCTGGACCTAGCTCGGAGAGGCACTATGGGCTGTTTAATGCTGATGGAAGGATTGCATATGATATTGGTTATGAGGGTCTATTACCTTCATCTGCACCCTCGTACTTCTTGTCTCTTAGGAAAATTCAAGCTGGGGGTTGGATTGTACACTATTCGGCTACAGTTATTTTATCTGTTTTCATTTTCTTAGCCTTAGTGACTTGATTACAGAATAGCACATCTGTATTGAACATACAACCGAGGTTAAGTGTTAGAACAATGTGATTGGGAATTTTACAATGAAAGATGAAATAATAGCTC ]
consensusID : consensus_6150#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence
[TCTACATGAGTGATCCAGAACATATTGACATTAATACGGCTCTCTTCAAGCTCAATCCGGGAATTGTTGACCCGAGATACTAGTGGGCATTATGATATCATGTATGATGCTTAGATAGATGCAGCTTATGCTGCTCAGCAGGCCGCTGGGTATAGAAACATGGAGGTCCGTGTATCGCAGACTGGCTGGGCTTCTAGTGGAGATCAAATTGAGCCAGGAGCTTCAGTTGAGAATGCAGGGACTTACAATTTCCACCTCCGAAAGAGGCTCTTTTTGAGTAAAGGATCTCCTCTCAAGCCAAAGAGACCAGTCAAAGCATATATCTCTGCGGTGTTTAATGAGAATTGGAAGCCTGGTCCTAGCTAGCAGAGGCTCTATGGGCTGTTTAATGCTGATGTAAGGATGGCATATGACATTGGTTAGGAGGGTCTCTTTCCTTGTATCAGGGCCCTGGTAATTATCGTCTTTTAGGAAAATTCTAGCTGGGGGTTGGATTGTTCGCTATTCGGGTACAGTTTTATCATCAGTTTTCCTTTTGGGAGCCATAGTGCCTTGATTCCAGAATAGCGCATTTGTATTGCACATACAACCGAGGTTAAGTGTTAGATCAATGCGATTGGGAATCTTTCAATGAACGGTGAAATAATAGCTCCTTTGGCTCCAAAAAAAAAAA]
[-] EMBL CA759251 [TCTACATGAGTGATCCAGAACATATTGACATTAATACGGCTCTCTTCAAGCTCAATCCGGGAATTGTTGACCCGAGATACTAGTGGGCATTATGATATCATGTATGATGCTTAGATAGATGCAGCTTATGCTGCTCAGCAGGCCGCTGGGTATAGAAACATGGAGGTCCGTGTATCGCAGACTGGCTGGGCTTCTAGTGGAGATCAAATTGAGCCAGGAGCTTCAGTTGAGAATGCAGGGACTTACAATTTCCACCTCCGAAAGAGGCTCTTTTTGAGTAAAGGATCTCCTCTCAAGCCAAAGAGACCAGTCAAAGCATATATCTCTGCGGTGTTTAATGAGAATTGGAAGCCTGGTCCTAGCTAGCAGAGGCTCTATGGGCTGTTTAATGCTGATGTAAGGATGGCATATGACATTGGTTAGGAGGGTCTCTTTCCTTGTATCAGGGCCCTGGTAATTATCGTCTTTTAGGAAAATTCTAGCTGGGGGTTGGATTGTTCGCTATTCGGGTACAGTTTTATCATCAGTTTTCCTTTTGGGAGCCATAGTGCCTTGATTCCAGAATAGCGCATTTGTATTGCACATACAACCGAGGTTAAGTGTTAGATCAATGCGATTGGGAATCTTTCAATGAACGGTGAAATAATAGCTCCTTTGGCTCCAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6150#0 GCGACACGCGCACCACCACCACCCCCCACCCACCTCCGCCGCGTTTCAAAATTCCCAAAC 60
consensus_6150#1 ------------------------------------------------------------
consensus_6150#0 CCCCCCTCCCCTCCCCTTCTCTCCTCCGCTGCGACGGCGGTGAGCGAGCCACCCCCGGAG 120
consensus_6150#1 ------------------------------------------------------------
consensus_6150#0 TCGGCGCGGGCGGCGTGCTCCTCCTCCTCCTCCATCCATCCAAATAGTACCCCCCCCCCA 180
consensus_6150#1 ------------------------------------------------------------
consensus_6150#0 ATCTCCTCCCCGCTAAGCAAACCCCCCTAATCCTTCCTTAACCCCACCCTTCTTGCTTGC 240
consensus_6150#1 ------------------------------------------------------------
consensus_6150#0 TTCGCTGCTGCTGCTTCGCTTGGTTGGTTGGTTATATTTAGTAGTCCGCGAGAAGAGTGG 300
consensus_6150#1 ------------------------------------------------------------
consensus_6150#0 AGTTGTGACTAGGTGTGTGCTTACCACTGGGAGGAGGAGGAGGAGGAGGAGTTGTGGACT 360
consensus_6150#1 ------------------------------------------------------------
consensus_6150#0 ATAACGAGCGGGAATCGAGATTCCTTCGTGTTGGTGTTGTTGTTGTTGGTGGTGGTGGTG 420
consensus_6150#1 ------------------------------------------------------------
consensus_6150#0 GTGCGTTGGTTGATTGGTCGGCGGCGGGAGGGATCCGGTTCTTGCGGATTCTTTACCGTT 480
consensus_6150#1 ------------------------------------------------------------
consensus_6150#0 CTTGGTGAATCCGTGGAGAAGGCGGCGGGCCAAGATTGCTCGGAGGTGCTCGGCCGTGGC 540
consensus_6150#1 ------------------------------------------------------------
consensus_6150#0 GGAGCGGTGGTCCGTCTATGGAACTTGCCGCCGCGGCGCCATGCCCCGCCCTGGAACTGA 600
consensus_6150#1 ------------------------------------------------------------
consensus_6150#0 GGCTACCACCACCACCACTTCTGGCTGTGAAGCGGATTGTGGTGTCCCTGCTATGAAGGC 660
consensus_6150#1 ------------------------------------------------------------
consensus_6150#0 GACGTTGATGATGATGAGTTGTCGGAGTCGGAGTCGGAGCGGGCGTGCTCACTGGATGCT 720
consensus_6150#1 ------------------------------------------------------------
consensus_6150#0 GCTGCTCTTCTGCCTCCTCCTCGCCTTCCCTTCACATGGTCCTAGAGCCGTGGAAGCGTT 780
consensus_6150#1 ------------------------------------------------------------
consensus_6150#0 TCCCGGGGGCTATGGGATAAACTACGGGAGAATAGCAAACAACATCCCTTCTCCGGATAA 840
consensus_6150#1 ------------------------------------------------------------
consensus_6150#0 AGTAGTACAACTCCTGAGAGCTTCAAAGATAAGGAATGTCAAGATATACGATTCCGATCA 900
consensus_6150#1 ------------------------------------------------------------
consensus_6150#0 CAGCGTTCTTGATGCATTCAAGGGATCTGGGCTCAATCTGGTTATCGCCATCCCCAATGA 960
consensus_6150#1 ------------------------------------------------------------
consensus_6150#0 GCTCGTGAAGGATTTTGCGGCGAATGAGAGCAGGTCGATCGACTGGCTGAATGAGAATGT 1020
consensus_6150#1 ------------------------------------------------------------
consensus_6150#0 GCAGCCCTATCTTCCTCAGACACGCATAGTTGGGATCACTGTGGGAAATGAGGTGCTGGG 1080
consensus_6150#1 ------------------------------------------------------------
consensus_6150#0 AGGTCAAGATACAAGCTTGGCCGAGCCCCTCGTTCAAGCTGTGAAGAATGTCTATAATGG 1140
consensus_6150#1 ------------------------------------------------------------
consensus_6150#0 ACTCAAGAAATTTCACTTGCAAGACAAAATTGAGCTATTCACACCACACTCAGAAGCTGT 1200
consensus_6150#1 ------------------------------------------------------------
consensus_6150#0 TTTTGCTACTTCATATCCACCTTCTGCATGTGTTTTCAAGGAAGATGTCATGGTGTATAT 1260
consensus_6150#1 ------------------------------------------------------------
consensus_6150#0 GAAACCACTGCTGGACTTCTTTCAACAAATTGGCTCACCTTTCTATGTCAACGCATATCC 1320
consensus_6150#1 ------------------------------------------------------------
consensus_6150#0 CTTTTTGGCCTACATAAGTGATCCAGAACATATTGACATTAATTACGCTCTCTTCAAGCC 1380
consensus_6150#1 --------TCTACATGAGTGATCCAGAACATATTGACATTAATACGGCTCTCTTCAAGCT 52
****** *************************** *************
consensus_6150#0 CAATCCTGGAATTGTTGACCCGA-ATACTAGTCTGCATTATGATAACATGTTCGATGCTC 1439
consensus_6150#1 CAATCCGGGAATTGTTGACCCGAGATACTAGTGGGCATTATGATATCATGTATGATGCTT 112
****** **************** ******** *********** ***** ******
consensus_6150#0 AGATAGATGCAGCTTATGCTGCTCTGCAGGCCGCTGGGTATAGAGACATGGAGGTCCGAG 1499
consensus_6150#1 AGATAGATGCAGCTTATGCTGCTCAGCAGGCCGCTGGGTATAGAAACATGGAGGTCCGTG 172
************************ ******************* ************* *
consensus_6150#0 TAGCGGAGACTGGCTGGGCTTCTAGTGGAGATCAAACTGAGGCAGGAGCTTCAGTTGAGA 1559
consensus_6150#1 TATCGCAGACTGGCTGGGCTTCTAGTGGAGATCAAATTGAGCCAGGAGCTTCAGTTGAGA 232
** ** ****************************** **** ******************
consensus_6150#0 ATGCAAGGACTTACAATTTCAACCTCCGAAAGAGGCTCTTTCTGAGGAAAGGAACTCCTC 1619
consensus_6150#1 ATGCAGGGACTTACAATTTCCACCTCCGAAAGAGGCTCTTTTTGAGTAAAGGATCTCCTC 292
***** ************** ******************** **** ****** ******
consensus_6150#0 TCAAGCCAAAGAGACCAGTCAAAGCATACATCTTTGCGTTGTTTAATGAGAATTCGAAGC 1679
consensus_6150#1 TCAAGCCAAAGAGACCAGTCAAAGCATATATCTCTGCGGTGTTTAATGAGAATTGGAAGC 352
**************************** **** **** *************** *****
consensus_6150#0 CTGGACCTAGCTCGGAGAGGCACTATGGGCTGTTTAATGCTGATGGAAGGATTGCATATG 1739
consensus_6150#1 CTGGTCCTAGCTAGCAGAGGCTCTATGGGCTGTTTAATGCTGATGTAAGGATGGCATATG 412
**** ******* * ****** *********************** ****** *******
consensus_6150#0 ATATTGGTTATGAGGGTCTATTACCTT-CATCTGCACCCTCGTACTTCTTGTCTCTTAGG 1798
consensus_6150#1 ACATTGGTTAGGAGGGTCTCTTTCCTTGTATCAGGGCCCTGGTAATTATCGTCTTTTAGG 472
* ******** ******** ** **** *** * **** *** ** * **** *****
consensus_6150#0 AAAATTCAAGCTGGGGGTTGGATTGTACACTATTCGGCTACAGTTATTTTATCTGTTTTC 1858
consensus_6150#1 AAAATTCTAGCTGGGGGTTGGATTGTTCGCTATTCGGGTACAGTTTTATCATCAGTTTTC 532
******* ****************** * ******** ******* * * *** ******
consensus_6150#0 ATTTTCTTAGCCTTAGTGACTTGATTACAGAATAGCACATCTGTATTGAACATACAACCG 1918
consensus_6150#1 CTTTTGGGAGCCATAGTGCCTTGATTCCAGAATAGCGCATTTGTATTGCACATACAACCG 592
**** **** ***** ******* ********* *** ******* ***********
consensus_6150#0 AGGTTAAGTGTTAGAACAATGTGATTGGGAATTTTACAATGAAAGATGAAATAATAGCTC 1978
consensus_6150#1 AGGTTAAGTGTTAGATCAATGCGATTGGGAATCTTTCAATGAACGGTGAAATAATAGCTC 652
*************** ***** ********** ** ******* * **************
consensus_6150#0 CCTTCGC-------------- 1985
consensus_6150#1 CTTTGGCTCCAAAAAAAAAAA 673
* ** **
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||