Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6162 cluster # 6162       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6162#0 length = 3401 sequences # 3  
 consensus_6162#1 length = 448 sequences # 1  
consensusID : consensus_6162#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 3401
fasta sequence 
                              [CCATCCATCCCCTGTTGCCTCGGCGAGCTACAGGCAGCGCCATCTGCTGTGCGAGACTAGCTATAGCTCTGTGTGATCCTGTCTGCACCGGAATGCGCGATGGCGAGGCCTTTCGGCGGCTACCTCCGCCGCTGCTTCTGCTGCTCCTTCTTGCTGCCGGCGTCGCGCGCGGCCAGCAGACGACGGCGCCGCCGGTGGTGCCGGATGCGCTCAACAACCTCACCAGAGACGTCGCCGACTACATCTCCCACCGCTTCAGCTTCTGCGTCGCCGACCCGACGGAGGATTGGAATGAGGCCTTCAATTACACCTCGGATCTTGGATTCGTGCAGAACTACCTCGCGGAGACAAGAGGTGATTTGGGAGGGCGTCTGTGCACACCGAACGAAGTGAAATTCTACTTCTCGAGTTTGTATGATCGAAAAGGCGAAAAAAACCTCTTTCTGAAAACCAACATAAACTGCAACAGATCATCTTGGGTTCAGGGCTGTGAGCCAGGGTGGGCTTGCTCTGTAGGTTCAGGCCCTAACCCCCAAGGCAATATTCCACCAAGAACTGCAAGTTGTCAGCCGTGTTGCGAAGGCTTCTTCTGTCCCCGTGGTCTTACATGCATGTTGCCTTGTCCATTGGGATCATACTGTCCGCGTGCCACTGTGAACACAACCACTGGTCTTTGTGATCCATACAAGTATCAGATAACTCCAAATACAACTGGCTGCGGGGGTGCTGACACATGGGCTGATTTTGGGAGCACTGAAGAGATGTTCTGTCCAGCCGGTTACTACTGTCCAACACCAACAAAAAAGGAACCTTGTAGCGAAGGGCACTATTGCAGACTGGGTTCCACCACTCAAGACAAATGTATCATAAAGGGATCCTGCAAGGAGAAGACAGAGAATGAAAACATTGTCATTCTTGGTGGTTGTTTAGTGGGCATGTTGTTTGTATTTCTTCTGATCATATACAACTGTTCAGGCCAGTTCCTGACTATCCGCGAGAAACGGAAAGCGAGATCGAGGGAGAATGCTATTCAGTTGGCACGTCAGCAGCTCAAAGCGCATGAGGGATGGAAGGCGGCGAAACGACTGGCGAGGAAGCATGTCAATGACATGCAGAGTCATCTCTCACGTACATTCTCTCGTAGGAGATCATTCCGTCAGCATCTGGACTCGGAGAATTCTGGCCATAGGTTGCAGGAAGCACCACTGTTTATGAACCAGGAGTTGTCGGATTCTGCTGCATTTTCAGCTCATCAGAGCACTGGTGAGATATCTGAAGTCATGCCTTCAGTCGTTGTGGATGTTAGCGATGATGGAGAAATTGTTGCCGGCAAGGATAGATCTGCACCAAAAGGCAAGCACAGATCAACACACACGCAGATCTTCAAGTACGCATATGGTGAGATCGAGAAGGAGAAGGTCAGGCAACAGGAGAACAAGAACCTGACCTTCACTGGAGTGCTCTCCATGGTGTCAGAGCAGCAGAAGGAGATAACAAGGCCTCTGCTCAAGGTTGAGTTCAAAGACCTGACCCTGTCACTTGGAAAGAAGAAGCTGTTGAGGTCTATCAATGGCGAACTCCGGCCTGGCCGTGTCACTGCCGTCATGGGCCCATCCGGGGCCGGCAAGACCACATTCCTCAATGCTGTTACAGGGAAGGTAGCTGGCTATAAGGTGTCAGGTTCAGTTCTTGTCAATGGGAGGCATGACAACATCCGTTCTTACAAGAAGATCATTGGATTTGTTCCTCAAGATGATGTTGTTCATGGGAATTTAACAGTGGAAGAGAACCTTTGGTTCAGTGCAAAGTGCAGGCTCTCTGCGACAACGGCACACCGCCACAAGGTCCTCACTGTGGAGAGGGTCATAGACTCCCTGGACCTTCAGGGAGTCAGAAGTTCATTGGTTGGAACTGTGGAGAAGCGCGGGATCTCTGGTGGACAGAGGAAGCGTGTCAATGTGGGTATTGAAATGGTGATGGAGCCATCACTTCTGATCCTGGATGAACCA-ACCTCTGGCCTGGACAGCTCCTCTTCACAACTGCTCCTCCGAGCACTACGTCATGAGGCGCTCGAAGGCGTAAATGTTTGCGCAGTTGTTCATCAACCGAGCTACACATTGTACAACATGTTTGATGATCTGATACTTCTGGCAAAAGGAGGTCTAATTGTTTACAATGGTCCGGTCAAGAGTGTGGAGGATTACTTCTCAACTCTTGGGATCACTGTCCCTGAAAGAGTTAACCCACCAGATCACTACATTGACATTCTTGAGGGCATTGTGAAGCCTGAGTCAGGCATCAATGCGAAGCATTTTCCATTGCACTGGATGCTCTACAATGGCTATGAAGTGCCAAATGACATGAAAGATGATCTCAAGGCAATAGGTGAACAGAGACCACATTTGGGGTCCAGCCCTTCAGCTGGATCAACACCTCATTGCCTTCCTCATGTCAGGAATGCTTTTGCTGAAGAGCGTGATCGTATCGAGCACCATTTGTCTAAACCAAAGGATTTGTCCAGCAGAAGAACACCAGGGGTGATTAGACAGTACAAGTACTACCTAGGAAGGGTCACAAAACAGAGGTTGCGCGAAGCTAGGTTGCTTGCAGTTGATTTTCTGATACTAGGCCTTGCTGGGATCTGTCTGGGTACTATTGCAAAGCTCAGTGATCCAAATTTTGGGATGCCTGGCTACATTTACACCATAATTGCAGTTTCTCTGTTGTGCAAGATTGCAGCACTAAGGTCGTTTTCACTTGAAAGATTGCAATACTTGAGGGAAAGAGAGTCAGGGATGAGCTCATTGGCATACTTTCTTGCTAGGGATACAATTGATCATTTCAGCACGATTGTGAAGCCGATCGTTTACCTCTCCATGTTCTACTACTTCAATAATCCAAGATCTACAATTACCGATAACTATATCATTCTCCTCGCACTTGTGTACTGCGTAACCGGTATAGGATACACTTTTGCTATCTGCTTCAACCCTGGTTCTGCACAACTGTGTTCTGCATTGATCCCAGTTGTTCTGACTTTGTTATCCACTCAAAATAATACCCCTGCAATTCTCAATAGATTATGCTATCCAAAGTGGGCATTAGAGGGTTTCATAATTGTAAATGCAAAAAGGTATCCTGGAGTTTGGCTTATAACTCGCTGTGGGTTGTTGTTCAGAAGTCGTTTCGACATTCATCATTACATGCTCTGTATTTTGGTTCTGTTTATGTATGGTCTGTTCTTCAGAATTGTTGCATTTGTGGCCTTGATTTTAGTGAAGAAGAGATGAGCAGAGGGCAATTGCACCAACTTTTCACATTTGATTCTTTCATTATTTTGTACAGTTGTAAATCAGTTTTGATACTACAGATGAAATATAGAGAATCCTTCATAAAAAAGG]

[+] EMBL AK121164             [CCATCCATCCCCTGTTGCCTCGGCGAGCTACAGGCAGCGCCATCTGCTGTGCGAGACTAGCTATAGCTCTGTGTGATCCTGTCTGCACCGGAATGCGCGATGGCGAGGCCTTTCGGCGGCTACCTCCGCCGCTGCTTCTGCTGCTCCTTCTTGCTGCCGGCGTCGCGCGCGGCCAGCAGACGACGGCGCCGCCGGTGGTGCCGGATGCGCTCAACAACCTCACCAGAGACGTCGCCGACTACATCTCCCACCGCTTCAGCTTCTGCGTCGCCGACCCGACGGAGGATTGGAATGAGGCCTTCAATTACACCTCGGATCTTGGATTCGTGCAGAACTACCTCGCGGAGACAAGAGGTGATTTGGGAGGGCGTCTGTGCACACCGAACGAAGTGAAATTCTACTTCTCGAGTTTGTATGATCGAAAAGGCGAAAAAAACCTCTTTCTGAAAACCAACATAAACTGCAACAGATCATCTTGGGTTCAGGGCTGTGAGCCAGGGTGGGCTTGCTCTGTAGGTTCAGGCCCTAACCCCCAAGGCAATATTCCACCAAGAACTGCAAGTTGTCAGCCGTGTTGCGAAGGCTTCTTCTGTCCCCGTGGTCTTACATGCATGTTGCCTTGTCCATTGGGATCATACTGTCCGCGTGCCACTGTGAACACAACCACTGGTCTTTGTGATCCATACAAGTATCAGATAACTCCAAATACAACTGGCTGCGGGGGTGCTGACACATGGGCTGATTTTGGGAGCACTGAAGAGATGTTCTGTCCAGCCGGTTACTACTGTCCAACACCAACAAAAAAGGAACCTTGTAGCGAAGGGCACTATTGCAGACTGGGTTCCACCACTCAAGACAAATGTATCATAAAGGGATCCTGCAAGGAGAAGACAGAGAATGAAAACATTGTCATTCTTGGTGGTTGTTTAGTGGGCATGTTGTTTGTATTTCTTCTGATCATATACAACTGTTCAGGCCAGTTCCTGACTATCCGCGAGAAACGGAAAGCGAGATCGAGGGAGAATGCTATTCAGTTGGCACGTCAGCAGCTCAAAGCGCATGAGGGATGGAAGGCGGCGAAACGACTGGCGAGGAAGCATGTCAATGACATGCAGAGTCATCTCTCACGTACATTCTCTCGTAGGAGATCATTCCGTCAGCATCTGGACTCGGAGAATTCTGGCCATAGGTTGCAGGAAGCACCACTGTTTATGAACCAGGAGTTGTCGGATTCTGCTGCATTTTCAGCTCATCAGAGCACTGGTGAGATATCTGAAGTCATGCCTTCAGTCGTTGTGGATGTTAGCGATGATGGAGAAATTGTTGCCGGCAAGGATAGATCTGCACCAAAAGGCAAGCACAGATCAACACACACGCAGATCTTCAAGTACGCATATGGTGAGATCGAGAAGGAGAAGGTCAGGCAACAGGAGAACAAGAACCTGACCTTCACTGGAGTGCTCTCCATGGTGTCAGAGCAGCAGAAGGAGATAACAAGGCCTCTGCTCAAGGTTGAGTTCAAAGACCTGACCCTGTCACTTGGAAAGAAGAAGCTGTTGAGGTCTATCAATGGCGAACTCCGGCCTGGCCGTGTCACTGCCGTCATGGGCCCATCCGGGGCCGGCAAGACCACATTCCTCAATGCTGTTACAGGGAAGGTAGCTGGCTATAAGGTGTCAGGTTCAGTTCTTGTCAATGGGAGGCATGACAACATCCGTTCTTACAAGAAGATCATTGGATTTGTTCCTCAAGATGATGTTGTTCATGGGAATTTAACAGTGGAAGAGAACCTTTGGTTCAGTGCAAAGTGCAGGCTCTCTGCGACAACGGCACACCGCCACAAGGTCCTCACTGTGGAGAGGGTCATAGACTCCCTGGACCTTCAGGGAGTCAGAAGTTCATTGGTTGGAACTGTGGAGAAGCGCGGGATCTCTGGTGGACAGAGGAAGCGTGTCAATGTGGGTATTGAAATGGTGATGGAGCCATCACTTCTGATCCTGGATGAACCA ACCTCTGGCCTGGACAGCTCCTCTTCACAACTGCTCCTCCGAGCACTACGTCATGAGGCGCTCGAAGGCGTAAATGTTTGCGCAGTTGTTCATCAACCGAGCTACACATTGTACAACATGTTTGATGATCTGATACTTCTGGCAAAAGGAGGTCTAATTGTTTACAATGGTCCGGTCAAGAGTGTGGAGGATTACTTCTCAACTCTTGGGATCACTGTCCCTGAAAGAGTTAACCCACCAGATCACTACATTGACATTCTTGAGGGCATTGTGAAGCCTGAGTCAGGCATCAATGCGAAGCATTTTCCATTGCACTGGATGCTCTACAATGGCTATGAAGTGCCAAATGACATGAAAGATGATCTCAAGGCAATAGGTGAACAGAGACCACATTTGGGGTCCAGCCCTTCAGCTGGATCAACACCTCATTGCCTTCCTCATGTCAGGAATGCTTTTGCTGAAGAGCGTGATCGTATCGAGCACCATTTGTCTAAACCAAAGGATTTGTCCAGCAGAAGAACACCAGGGGTGATTAGACAGTACAAGTACTACCTAGGAAGGGTCACAAAACAGAGGTTGCGCGAAGCTAGGTTGCTTGCAGTTGATTTTCTGATACTAGGCCTTGCTGGGATCTGTCTGGGTACTATTGCAAAGCTCAGTGATCCAAATTTTGGGATGCCTGGCTACATTTACACCATAATTGCAGTTTCTCTGTTGTGCAAGATTGCAGCACTAAGGTCGTTTTCACTTGAAAGATTGCAATACTTGAGGGAAAGAGAGTCAGGGATGAGCTCATTGGCATACTTTCTTGCTAGGGATACAATTGATCATTTCAGCACGATTGTGAAGCCGATCGTTTACCTCTCCATGTTCTACTACTTCAATAATCCAAGATCTACAATTACCGATAACTATATCATTCTCCTCGCACTTGTGTACTGCGTAACCGGTATAGGATACACTTTTGCTATCTGCTTCAACCCTGGTTCTGCACAACTGTGTTCTGCATTGATCCCAGTTGTTCTGACTTTGTTATCCACTCAAAATAATACCCCTGCAATTCTCAATAGATTATGCTATCCAAAGTGGGCATTAGAGGGTTTCATAATTGTAAATGCAAAAAGGTATCCTGGAGTTTGGCTTATAACTCGCTGTGGGTTGTTGTTCAGAAGTCGTTTCGACATTCATCATTACATGCTCTGTATTTTGGTTCTGTTTATGTATGGTCTGTTCTTCAGAATTGTTGCATTTGTGGCCTTGATTTTAGTGAAGAAGAGATGAGCAGAGGGCAATTGCACCAACTTTTCACATTTGATTCTTTCATTATTTTGTACAGTTGTAAATCAGTTTTGATACTACAGATGA                           ]
[+] EMBL CB669206             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CATCACTTCTGATCCTGCATGAACCATTCCTTTGGCCTGGACAGCTCCTCTTCACAACTGCTCCTCCTAGCACTACGTCATGAGGCGCTCCAAGGCGTAAATGTTTGCGCAGTTGTTCATCAACCGAGCTACACATTGTACAACATGTTTGATGATCTGATACTTCTGGCAAAAGGAGGTCTAATTGTTTACAATGGTCCGGTCAAGAGTGTGGAGGATTACTTCTCAACTCTTGGGATCACTGTCCCTGAAAGAGTTAACCCACCAGATCACTACATTGACATTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CB669207             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         cCAGTGATCCAAATTTTGGGATGCCTGGCTACATTTACACCATAATTGCAGTTTCTCTGTTGTGCAAGATTGCAGCACTAAGGTCGTTTTCACTTGAAAGATTGCAATACTTGAGGGAAAGAGAGTCAGGGATGAGCTCATTGGCATACTTTCTTGCTAGGGATACAATTGATCATTTCAGCACGATTGTGAAGCCGATCGTTTACCTCTCCATGTTCTACTACTTCAATAATCCAAGATCTACAATTACCGATAACTATATCATTCTCCTCGCACTTGTGTACTGCGTAACCGGTATAGGATACACTTTTGCTATCTGCTTCAACCCTGGTTCTGCACAACTGTGTTCTGCATTGATCCCAGTTGTTCTGACTTTGTTATCCACTCAAAATAATACCCCTGCAATTCTCAATAGATTATGCTATCCAAAGTGGGCATTAGAGGGTTTCATAATTGTAAATGCAAAAAGGTATCCTGGAGTTTGGCTTATAACTCGCTGTGGGTTGTTGTTCAGAAGTCGTTTCGACATTCATCATTACATGCTCTGTATTTTGGTTCTGTTTATGTATGGTCTGTTCTTCAGAATTGTTGCATTTGTGGCCTTGATTTTAGTGAAGAAGAGATGAGCAGAGGGCAATTGCACCAACTTTTCACATTTGATTCTTTCATTATTTTGTACAGTTGTAAATCA ATGGGATACTACAGATGAAATATAGAGAATCCTTCATAAAAAAGG]




>consensus_6162#0
CCATCCATCCCCTGTTGCCTCGGCGAGCTACAGGCAGCGCCATCTGCTGTGCGAGACTAG
CTATAGCTCTGTGTGATCCTGTCTGCACCGGAATGCGCGATGGCGAGGCCTTTCGGCGGC
TACCTCCGCCGCTGCTTCTGCTGCTCCTTCTTGCTGCCGGCGTCGCGCGCGGCCAGCAGA
CGACGGCGCCGCCGGTGGTGCCGGATGCGCTCAACAACCTCACCAGAGACGTCGCCGACT
ACATCTCCCACCGCTTCAGCTTCTGCGTCGCCGACCCGACGGAGGATTGGAATGAGGCCT
TCAATTACACCTCGGATCTTGGATTCGTGCAGAACTACCTCGCGGAGACAAGAGGTGATT
TGGGAGGGCGTCTGTGCACACCGAACGAAGTGAAATTCTACTTCTCGAGTTTGTATGATC
GAAAAGGCGAAAAAAACCTCTTTCTGAAAACCAACATAAACTGCAACAGATCATCTTGGG
TTCAGGGCTGTGAGCCAGGGTGGGCTTGCTCTGTAGGTTCAGGCCCTAACCCCCAAGGCA
ATATTCCACCAAGAACTGCAAGTTGTCAGCCGTGTTGCGAAGGCTTCTTCTGTCCCCGTG
GTCTTACATGCATGTTGCCTTGTCCATTGGGATCATACTGTCCGCGTGCCACTGTGAACA
CAACCACTGGTCTTTGTGATCCATACAAGTATCAGATAACTCCAAATACAACTGGCTGCG
GGGGTGCTGACACATGGGCTGATTTTGGGAGCACTGAAGAGATGTTCTGTCCAGCCGGTT
ACTACTGTCCAACACCAACAAAAAAGGAACCTTGTAGCGAAGGGCACTATTGCAGACTGG
GTTCCACCACTCAAGACAAATGTATCATAAAGGGATCCTGCAAGGAGAAGACAGAGAATG
AAAACATTGTCATTCTTGGTGGTTGTTTAGTGGGCATGTTGTTTGTATTTCTTCTGATCA
TATACAACTGTTCAGGCCAGTTCCTGACTATCCGCGAGAAACGGAAAGCGAGATCGAGGG
AGAATGCTATTCAGTTGGCACGTCAGCAGCTCAAAGCGCATGAGGGATGGAAGGCGGCGA
AACGACTGGCGAGGAAGCATGTCAATGACATGCAGAGTCATCTCTCACGTACATTCTCTC
GTAGGAGATCATTCCGTCAGCATCTGGACTCGGAGAATTCTGGCCATAGGTTGCAGGAAG
CACCACTGTTTATGAACCAGGAGTTGTCGGATTCTGCTGCATTTTCAGCTCATCAGAGCA
CTGGTGAGATATCTGAAGTCATGCCTTCAGTCGTTGTGGATGTTAGCGATGATGGAGAAA
TTGTTGCCGGCAAGGATAGATCTGCACCAAAAGGCAAGCACAGATCAACACACACGCAGA
TCTTCAAGTACGCATATGGTGAGATCGAGAAGGAGAAGGTCAGGCAACAGGAGAACAAGA
ACCTGACCTTCACTGGAGTGCTCTCCATGGTGTCAGAGCAGCAGAAGGAGATAACAAGGC
CTCTGCTCAAGGTTGAGTTCAAAGACCTGACCCTGTCACTTGGAAAGAAGAAGCTGTTGA
GGTCTATCAATGGCGAACTCCGGCCTGGCCGTGTCACTGCCGTCATGGGCCCATCCGGGG
CCGGCAAGACCACATTCCTCAATGCTGTTACAGGGAAGGTAGCTGGCTATAAGGTGTCAG
GTTCAGTTCTTGTCAATGGGAGGCATGACAACATCCGTTCTTACAAGAAGATCATTGGAT
TTGTTCCTCAAGATGATGTTGTTCATGGGAATTTAACAGTGGAAGAGAACCTTTGGTTCA
GTGCAAAGTGCAGGCTCTCTGCGACAACGGCACACCGCCACAAGGTCCTCACTGTGGAGA
GGGTCATAGACTCCCTGGACCTTCAGGGAGTCAGAAGTTCATTGGTTGGAACTGTGGAGA
AGCGCGGGATCTCTGGTGGACAGAGGAAGCGTGTCAATGTGGGTATTGAAATGGTGATGG
AGCCATCACTTCTGATCCTGGATGAACCAACCTCTGGCCTGGACAGCTCCTCTTCACAAC
TGCTCCTCCGAGCACTACGTCATGAGGCGCTCGAAGGCGTAAATGTTTGCGCAGTTGTTC
ATCAACCGAGCTACACATTGTACAACATGTTTGATGATCTGATACTTCTGGCAAAAGGAG
GTCTAATTGTTTACAATGGTCCGGTCAAGAGTGTGGAGGATTACTTCTCAACTCTTGGGA
TCACTGTCCCTGAAAGAGTTAACCCACCAGATCACTACATTGACATTCTTGAGGGCATTG
TGAAGCCTGAGTCAGGCATCAATGCGAAGCATTTTCCATTGCACTGGATGCTCTACAATG
GCTATGAAGTGCCAAATGACATGAAAGATGATCTCAAGGCAATAGGTGAACAGAGACCAC
ATTTGGGGTCCAGCCCTTCAGCTGGATCAACACCTCATTGCCTTCCTCATGTCAGGAATG
CTTTTGCTGAAGAGCGTGATCGTATCGAGCACCATTTGTCTAAACCAAAGGATTTGTCCA
GCAGAAGAACACCAGGGGTGATTAGACAGTACAAGTACTACCTAGGAAGGGTCACAAAAC
AGAGGTTGCGCGAAGCTAGGTTGCTTGCAGTTGATTTTCTGATACTAGGCCTTGCTGGGA
TCTGTCTGGGTACTATTGCAAAGCTCAGTGATCCAAATTTTGGGATGCCTGGCTACATTT
ACACCATAATTGCAGTTTCTCTGTTGTGCAAGATTGCAGCACTAAGGTCGTTTTCACTTG
AAAGATTGCAATACTTGAGGGAAAGAGAGTCAGGGATGAGCTCATTGGCATACTTTCTTG
CTAGGGATACAATTGATCATTTCAGCACGATTGTGAAGCCGATCGTTTACCTCTCCATGT
TCTACTACTTCAATAATCCAAGATCTACAATTACCGATAACTATATCATTCTCCTCGCAC
TTGTGTACTGCGTAACCGGTATAGGATACACTTTTGCTATCTGCTTCAACCCTGGTTCTG
CACAACTGTGTTCTGCATTGATCCCAGTTGTTCTGACTTTGTTATCCACTCAAAATAATA
CCCCTGCAATTCTCAATAGATTATGCTATCCAAAGTGGGCATTAGAGGGTTTCATAATTG
TAAATGCAAAAAGGTATCCTGGAGTTTGGCTTATAACTCGCTGTGGGTTGTTGTTCAGAA
GTCGTTTCGACATTCATCATTACATGCTCTGTATTTTGGTTCTGTTTATGTATGGTCTGT
TCTTCAGAATTGTTGCATTTGTGGCCTTGATTTTAGTGAAGAAGAGATGAGCAGAGGGCA
ATTGCACCAACTTTTCACATTTGATTCTTTCATTATTTTGTACAGTTGTAAATCAGTTTT
GATACTACAGATGAAATATAGAGAATCCTTCATAAAAAAGG

consensusID : consensus_6162#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 448
fasta sequence 
                              [CGCAAGATGCGACNATGTATCTGATAACTATATGCAATGTGCTGCCTCGCACTGTGGTGTGACTGCGTAACCTGGTGATGAGGGATACACTGTTTGGCTGATGCTGGCTGTGCAACCGCTGGTTGCTGCACAACTGTGGTTGCTGGCATTGGATGCCCACGTTGTTCTGGACTTTGTTGATGCCACTGCAAAATAATGACCCCTGGCAATTGCTCCATAGATTATGCTGATGCCAAAGTGGGCATTAGAGGGTTTCATGAATTGTCNATGCCCNAAGGTATCCTGGAGTTTGGCTTATAACTGCGCTGGTGGGTTGTTGTTCAGAAGTCGTTTCGACATTCATCATTACATGCTCTGTATTTTGGTTCTGTTTATGTATGGTCTGTTCTTCAGAATTGTTGCATTTGTGGCCTTGATTCTACNTGAAGAAGAGATGAGCTTTTCAAAA]

[+] EMBL BM420472             [CGCAAGATGCGACNATGTATCTGATAACTATATGCAATGTGCTGCCTCGCACTGTGGTGTGACTGCGTAACCTGGTGATGAGGGATACACTGTTTGGCTGATGCTGGCTGTGCAACCGCTGGTTGCTGCACAACTGTGGTTGCTGGCATTGGATGCCCACGTTGTTCTGGACTTTGTTGATGCCACTGCAAAATAATGACCCCTGGCAATTGCTCCATAGATTATGCTGATGCCAAAGTGGGCATTAGAGGGTTTCATGAATTGTCNATGCCCNAAGGTATCCTGGAGTTTGGCTTATAACTGCGCTGGTGGGTTGTTGTTCAGAAGTCGTTTCGACATTCATCATTACATGCTCTGTATTTTGGTTCTGTTTATGTATGGTCTGTTCTTCAGAATTGTTGCATTTGTGGCCTTGATTCTACNTGAAGAAGAGATGAGCTTTTCAAAA]




>consensus_6162#1
CGCAAGATGCGACNATGTATCTGATAACTATATGCAATGTGCTGCCTCGCACTGTGGTGT
GACTGCGTAACCTGGTGATGAGGGATACACTGTTTGGCTGATGCTGGCTGTGCAACCGCT
GGTTGCTGCACAACTGTGGTTGCTGGCATTGGATGCCCACGTTGTTCTGGACTTTGTTGA
TGCCACTGCAAAATAATGACCCCTGGCAATTGCTCCATAGATTATGCTGATGCCAAAGTG
GGCATTAGAGGGTTTCATGAATTGTCNATGCCCNAAGGTATCCTGGAGTTTGGCTTATAA
CTGCGCTGGTGGGTTGTTGTTCAGAAGTCGTTTCGACATTCATCATTACATGCTCTGTAT
TTTGGTTCTGTTTATGTATGGTCTGTTCTTCAGAATTGTTGCATTTGTGGCCTTGATTCT
ACNTGAAGAAGAGATGAGCTTTTCAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6162#0      CCATCCATCCCCTGTTGCCTCGGCGAGCTACAGGCAGCGCCATCTGCTGTGCGAGACTAG 60
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      CTATAGCTCTGTGTGATCCTGTCTGCACCGGAATGCGCGATGGCGAGGCCTTTCGGCGGC 120
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      TACCTCCGCCGCTGCTTCTGCTGCTCCTTCTTGCTGCCGGCGTCGCGCGCGGCCAGCAGA 180
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      CGACGGCGCCGCCGGTGGTGCCGGATGCGCTCAACAACCTCACCAGAGACGTCGCCGACT 240
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      ACATCTCCCACCGCTTCAGCTTCTGCGTCGCCGACCCGACGGAGGATTGGAATGAGGCCT 300
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      TCAATTACACCTCGGATCTTGGATTCGTGCAGAACTACCTCGCGGAGACAAGAGGTGATT 360
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      TGGGAGGGCGTCTGTGCACACCGAACGAAGTGAAATTCTACTTCTCGAGTTTGTATGATC 420
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      GAAAAGGCGAAAAAAACCTCTTTCTGAAAACCAACATAAACTGCAACAGATCATCTTGGG 480
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      TTCAGGGCTGTGAGCCAGGGTGGGCTTGCTCTGTAGGTTCAGGCCCTAACCCCCAAGGCA 540
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      ATATTCCACCAAGAACTGCAAGTTGTCAGCCGTGTTGCGAAGGCTTCTTCTGTCCCCGTG 600
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      GTCTTACATGCATGTTGCCTTGTCCATTGGGATCATACTGTCCGCGTGCCACTGTGAACA 660
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      CAACCACTGGTCTTTGTGATCCATACAAGTATCAGATAACTCCAAATACAACTGGCTGCG 720
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      GGGGTGCTGACACATGGGCTGATTTTGGGAGCACTGAAGAGATGTTCTGTCCAGCCGGTT 780
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      ACTACTGTCCAACACCAACAAAAAAGGAACCTTGTAGCGAAGGGCACTATTGCAGACTGG 840
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      GTTCCACCACTCAAGACAAATGTATCATAAAGGGATCCTGCAAGGAGAAGACAGAGAATG 900
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      AAAACATTGTCATTCTTGGTGGTTGTTTAGTGGGCATGTTGTTTGTATTTCTTCTGATCA 960
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      TATACAACTGTTCAGGCCAGTTCCTGACTATCCGCGAGAAACGGAAAGCGAGATCGAGGG 1020
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      AGAATGCTATTCAGTTGGCACGTCAGCAGCTCAAAGCGCATGAGGGATGGAAGGCGGCGA 1080
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      AACGACTGGCGAGGAAGCATGTCAATGACATGCAGAGTCATCTCTCACGTACATTCTCTC 1140
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      GTAGGAGATCATTCCGTCAGCATCTGGACTCGGAGAATTCTGGCCATAGGTTGCAGGAAG 1200
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      CACCACTGTTTATGAACCAGGAGTTGTCGGATTCTGCTGCATTTTCAGCTCATCAGAGCA 1260
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      CTGGTGAGATATCTGAAGTCATGCCTTCAGTCGTTGTGGATGTTAGCGATGATGGAGAAA 1320
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      TTGTTGCCGGCAAGGATAGATCTGCACCAAAAGGCAAGCACAGATCAACACACACGCAGA 1380
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      TCTTCAAGTACGCATATGGTGAGATCGAGAAGGAGAAGGTCAGGCAACAGGAGAACAAGA 1440
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      ACCTGACCTTCACTGGAGTGCTCTCCATGGTGTCAGAGCAGCAGAAGGAGATAACAAGGC 1500
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      CTCTGCTCAAGGTTGAGTTCAAAGACCTGACCCTGTCACTTGGAAAGAAGAAGCTGTTGA 1560
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      GGTCTATCAATGGCGAACTCCGGCCTGGCCGTGTCACTGCCGTCATGGGCCCATCCGGGG 1620
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      CCGGCAAGACCACATTCCTCAATGCTGTTACAGGGAAGGTAGCTGGCTATAAGGTGTCAG 1680
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      GTTCAGTTCTTGTCAATGGGAGGCATGACAACATCCGTTCTTACAAGAAGATCATTGGAT 1740
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      TTGTTCCTCAAGATGATGTTGTTCATGGGAATTTAACAGTGGAAGAGAACCTTTGGTTCA 1800
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      GTGCAAAGTGCAGGCTCTCTGCGACAACGGCACACCGCCACAAGGTCCTCACTGTGGAGA 1860
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      GGGTCATAGACTCCCTGGACCTTCAGGGAGTCAGAAGTTCATTGGTTGGAACTGTGGAGA 1920
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      AGCGCGGGATCTCTGGTGGACAGAGGAAGCGTGTCAATGTGGGTATTGAAATGGTGATGG 1980
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      AGCCATCACTTCTGATCCTGGATGAACCAACCTCTGGCCTGGACAGCTCCTCTTCACAAC 2040
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      TGCTCCTCCGAGCACTACGTCATGAGGCGCTCGAAGGCGTAAATGTTTGCGCAGTTGTTC 2100
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      ATCAACCGAGCTACACATTGTACAACATGTTTGATGATCTGATACTTCTGGCAAAAGGAG 2160
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      GTCTAATTGTTTACAATGGTCCGGTCAAGAGTGTGGAGGATTACTTCTCAACTCTTGGGA 2220
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      TCACTGTCCCTGAAAGAGTTAACCCACCAGATCACTACATTGACATTCTTGAGGGCATTG 2280
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      TGAAGCCTGAGTCAGGCATCAATGCGAAGCATTTTCCATTGCACTGGATGCTCTACAATG 2340
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      GCTATGAAGTGCCAAATGACATGAAAGATGATCTCAAGGCAATAGGTGAACAGAGACCAC 2400
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      ATTTGGGGTCCAGCCCTTCAGCTGGATCAACACCTCATTGCCTTCCTCATGTCAGGAATG 2460
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      CTTTTGCTGAAGAGCGTGATCGTATCGAGCACCATTTGTCTAAACCAAAGGATTTGTCCA 2520
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      GCAGAAGAACACCAGGGGTGATTAGACAGTACAAGTACTACCTAGGAAGGGTCACAAAAC 2580
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      AGAGGTTGCGCGAAGCTAGGTTGCTTGCAGTTGATTTTCTGATACTAGGCCTTGCTGGGA 2640
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      TCTGTCTGGGTACTATTGCAAAGCTCAGTGATCCAAATTTTGGGATGCCTGGCTACATTT 2700
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      ACACCATAATTGCAGTTTCTCTGTTGTGCAAGATTGCAGCACTAAGGTCGTTTTCACTTG 2760
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      AAAGATTGCAATACTTGAGGGAAAGAGAGTCAGGGATGAGCTCATTGGCATACTTTCTTG 2820
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      CTAGGGATACAATTGATCATTTCAGCACGATTGTGAAGCCGATCGTTTACCTCTCCATGT 2880
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      TCTACTACTTCAATAATCCAAGATCTAC--AATTACCGATAACTATATCATTCTCCTCGC 2938
consensus_6162#1      --------CGCAAGATGCGACNATGTATCTGATAACTATATGCAATGTGCTGCCTCGCAC 52
                                *** *  * *  ** **    ** **      * ** *  * *  * * *

consensus_6162#0      ACTTGTGT-ACTGCGTAACC----GGTATAGGATACACTTTT--------GCTATCTGCT 2985
consensus_6162#1      TGTGGTGTGACTGCGTAACCTGGTGATGAGGGATACACTGTTTGGCTGATGCTGGCTGTG 112
                        * **** ***********    * *   ********* **        ***  ***  

consensus_6162#0      TCAACCCTGGTT-CTGCACAACTGTGTTCT---GCATTGA---TCCCAGTTGTTCTG-AC 3037
consensus_6162#1      CAACCGCTGGTTGCTGCACAACTGTGGTTGCTGGCATTGGATGCCCACGTTGTTCTGGAC 172
                        * * ****** ************* *     ******     **  ********* **

consensus_6162#0      TTTGTTAT--CCACT-CAAAATAAT-ACCCCTG-CAATT-CTCAATAGATTATGCTAT-- 3089
consensus_6162#1      TTTGTTGATGCCACTGCAAAATAATGACCCCTGGCAATTGCTCCATAGATTATGCTGATG 232
                      ******    ***** ********* ******* ***** *** ************    

consensus_6162#0      CCAAAGTGGGCATTAGAGGGTTTCAT-AATTGTAAATGCAAAAAGGTATCCTGGAGTTTG 3148
consensus_6162#1      CCAAAGTGGGCATTAGAGGGTTTCATGAATTGTCNATGCCCNAAGGTATCCTGGAGTTTG 292
                      ************************** ******  ****   ******************

consensus_6162#0      GCTTATAACT-CGCTG-TGGGTTGTTGTTCAGAAGTCGTTTCGACATTCATCATTACATG 3206
consensus_6162#1      GCTTATAACTGCGCTGGTGGGTTGTTGTTCAGAAGTCGTTTCGACATTCATCATTACATG 352
                      ********** ***** *******************************************

consensus_6162#0      CTCTGTATTTTGGTTCTGTTTATGTATGGTCTGTTCTTCAGAATTGTTGCATTTGTGGCC 3266
consensus_6162#1      CTCTGTATTTTGGTTCTGTTTATGTATGGTCTGTTCTTCAGAATTGTTGCATTTGTGGCC 412
                      ************************************************************

consensus_6162#0      TTGATTTTA-GTGAAGAAGAGATGAGCAGAGGGCAATTGCACCAACTTTTCACATTTGAT 3325
consensus_6162#1      TTGATTCTACNTGAAGAAGAGATGAGCTTTTCAAAA------------------------ 448
                      ****** **  ****************       **                        

consensus_6162#0      TCTTTCATTATTTTGTACAGTTGTAAATCAGTTTTGATACTACAGATGAAATATAGAGAA 3385
consensus_6162#1      ------------------------------------------------------------
                                                                                  

consensus_6162#0      TCCTTCATAAAAAAGG 3401
consensus_6162#1      ----------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)