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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6168#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 914 fasta sequence
[TCTTGTTGGGGCCACAGCATCTAGTTTTTCTGTTGTCAACATCAACCTTGAGCCCGAGTGCAACCTGTTCCCTTGCATGCTTCCAAATCCTTTGAATAACTTGAATACCTACATTGAAATATTCTGCAACCTTTTTTGTGGTGTCCTTCTCTAATCTGCCACCTTTGCTTTTAGCATGTAATGCTATGTAAACAGCATATCTTTCTTTGTCTGATAACCATCTCCTTATCTTTCTCTCTTGTGGTTGAACACCTACAAGGGCATGAATGAAACAGGACAAATATATTAAATCAAATTAACAAGATTCAAAATAATATGGATAAGCAGTTGTACTAGGACTAGGAGTACTAGAATTAATATAGGTAATCAAAACATGAATTACATATCAACATGTACTTAGAGTAGCAGAATGTCAAATCA-ACATGTACCACTGTTAACATGTTACTAGGAGTGGGAGA-GTAGGAGTACTAGGATTCTGGAGTTGATGGACAATTAACATGGATAGACAGTTAACTTTTTTTT-TTTCTTTCACTCTTTATTTCAGTTCAAGAACTTCAGGCA-CA-GGGAAATAAACAAATGGCAGCA-GGAGTATGTGTACAACAGTACATGCATTCAAGTGTACAGGCA-CAGCAGAAGGAAACTCTACAACATGTATAGATCAGCTTGTATACCAACATAAA-CCA-TGTGGAGGCTTGTCAATGAGTAGGAGGCTTCCATCATCACAATTTGATAATGCAGTTTGTATCTTCCTT-TTGTAAATGCA-GTTTGTAACTTCTTTTTGAGACTGTAACATGTTGGGAGCAGAATTTGATAATGCAGTTTATAACATGTTGTAAATACAGTTGTTGAACTATTGGGAGCAGAATGAATGAATGAATCGATCTGACAGTGTATAAATNCGGCCAAAAAAAAAA]
[+] EMBL AK121326 [TCTTGTTGGGGCCACAGCATCTAGTTTTTCTGTTGTCAACATCAACCTTGAGCCCGAGTGCAACCTGTTCCCTTGCATGCTTCCAAATCCTTTGAATAACTTGAATACCTACATTGAAATATTCTGCAACCTTTTTTGTGGTGTCCTTCTCTAATCTGCCACCTTTGCTTTTAGCATGTAATGCTATGTAAACAGCATATCTTTCTTTGTCTGATAACCATCTCCTTATCTTTCTCTCTTGTGGTTGAACACCTACAAGGGCATGAATGAAACAGGACAAATATATTAAATCAAATTAACAAGATTCAAAATAATATGGATAAGCAGTTGTACTAGGACTAGGAGTACTAGAATTAATATAGGTAATCAAAACATGAATTACATATCAACATGTACTTAGAGTAGCAGAATGTCAAATCA ACATGTACCACTGTTAACATGTTACTAGGAGTGGGAGA GTAGGAGTACTAGGATTCTGGAGTTGATGGACAATTAACATGGATAGACAGTTAACTTTTTTTT TTTCTTTCACTCTTTATTTCAGTTCAAGAACTTCAGGCA CA GGGAAATAAACAAATGGCAGCA GGAGTATGTGTACAACAGTACATGCATTCAAGTGTACAGGCA CAGCAGAAGGAAACTCTACAACATGTATAGATCAGCTTGTATACCAACATAAA CCA TGTGGAGGCTTGTCAATGAGTAGGAGGCTTCCATCATCACAATTTGATAATGCAGTTTGTATCTTCCTT TTGTAAATGCA GTTTGTAACTTCTTTTTGAGACTGTAACATGTTGGGAGCAGAATTTGATAATGCAGTTTATAACATGTTGTAAATACAGTTGTTGAACTATTGGGAGCAGAATGAATGAATGAATCGATCTGACAGTGTAT ]
[+] EMBL AU165422 [ TACCTTCCTTGGNCTGATACCCATCTCCTTATCTTCCCCCCTTGTGNTTG ACCCCTACAAGGNCATGATTGAAACAGGACAAATATATTAAATC AATTAACAAG TTCAAAATAATATGGATAAGCAGTTGTACTAGGACTAGGAGTACTAGAATTAATATAGGTAATCAAAACATGAATTACATATCAACATGTACTTAGAGTAGCAGAATGTCAAATCA ACATGTACCACTGTTAACATGTTACTAGGAGTGGGAGA GTAGGAGTACTAGGATTCTGGAGTTGATGGACAATTAACATGGATAGACAGTTAAC TTTTTTT TTTCTTTCACTCTTTATTTCAGTTCAAGAACTTCAGGCA CA GGGAAATAAACAAATGGCAGCA GGAGTATGTGTACAACAGTACATGCATTCAAGTGTACAGGCA CAGCAGAAGGAAACTCTACAACATGTATAGATCAGCTTGTATACCAACATAAA CCA TGTGGAGGCTTGTCAATGAGTAGGAGGCTTCCATCATCACAATTTGATAATGCAGTTTGTATCTTCCTT TTGTAAATGCA GTTTGTAACTTCTTTTTGAGACTGTAACATGTTGGGAGCAGAATTTGATAATGCAGTTTATAACATGTTGTAAATACAGTTGTTGAACTATTGGGAGCAGAATGAATGAATGAATCGATCTGACAGTGTAAAAA ]
[+] EMBL BM038274 [ AGAATGTCAAATCACACA GGACCCCTGTTAACATGTTACT GGAGTGGGAGATGTAGGAGTACTAGGATTCTGGAGTTGATGGACAATTAACATGGATAGACNGTTAACTTTTTTTTGTTTCTTTCACTCTTTATTTCAGTTCAAGAACTTCAGGCACCACGGGAAATAAACCAATGGCA CACGGAGTATGTGTACNACAGTACATGCATTCAAGTGTACAGGCACCAGCAGAAGGAAACTCTACAACATGTATAGATCAGCTTGTATACCAACATAAACCCACTGTGGAGGCTTGTCAATGAGTAGGAGGCTTCCATCATCACCATTTGATAATGCACTTTGTATCTTCCTTCTTGTAAATGCACGTTTGTAACTTCTTTTTGAGACTGTAACATGTTGGGAGCAGAATTTGATAATGCAGTTTATAACATGTTGTAAATACCGTTGTTGAACTATTGGGAGCAGAATGAATGAATGAATCGATCTGACNGTGTATCCCTNCGGCCAAAAAAAAAA]
consensusID : consensus_6168#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 232 fasta sequence
[AGTATGTGTACAACAGTACATGCATTCAAGTGTACAGGCACAGCAGAAGGAAACTCTACAACATGTATAGATCAGCTTGTATACCAACATAAACCATGTGGAGGCTTGTCAATGAGTAGGAGGCTTCCATCATCACAATTTGATAATGCAGTTTGTATCTTCCTTTTGTAAATGCAGTTTGTAACTTCTTTTTGAGACTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF318052 [AGTATGTGTACAACAGTACATGCATTCAAGTGTACAGGCACAGCAGAAGGAAACTCTACAACATGTATAGATCAGCTTGTATACCAACATAAACCATGTGGAGGCTTGTCAATGAGTAGGAGGCTTCCATCATCACAATTTGATAATGCAGTTTGTATCTTCCTTTTGTAAATGCAGTTTGTAACTTCTTTTTGAGACTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6168#0 TCTTGTTGGGGCCACAGCATCTAGTTTTTCTGTTGTCAACATCAACCTTGAGCCCGAGTG 60
consensus_6168#1 ------------------------------------------------------------
consensus_6168#0 CAACCTGTTCCCTTGCATGCTTCCAAATCCTTTGAATAACTTGAATACCTACATTGAAAT 120
consensus_6168#1 ------------------------------------------------------------
consensus_6168#0 ATTCTGCAACCTTTTTTGTGGTGTCCTTCTCTAATCTGCCACCTTTGCTTTTAGCATGTA 180
consensus_6168#1 ------------------------------------------------------------
consensus_6168#0 ATGCTATGTAAACAGCATATCTTTCTTTGTCTGATAACCATCTCCTTATCTTTCTCTCTT 240
consensus_6168#1 ------------------------------------------------------------
consensus_6168#0 GTGGTTGAACACCTACAAGGGCATGAATGAAACAGGACAAATATATTAAATCAAATTAAC 300
consensus_6168#1 ------------------------------------------------------------
consensus_6168#0 AAGATTCAAAATAATATGGATAAGCAGTTGTACTAGGACTAGGAGTACTAGAATTAATAT 360
consensus_6168#1 ------------------------------------------------------------
consensus_6168#0 AGGTAATCAAAACATGAATTACATATCAACATGTACTTAGAGTAGCAGAATGTCAAATCA 420
consensus_6168#1 ------------------------------------------------------------
consensus_6168#0 ACATGTACCACTGTTAACATGTTACTAGGAGTGGGAGAGTAGGAGTACTAGGATTCTGGA 480
consensus_6168#1 ------------------------------------------------------------
consensus_6168#0 GTTGATGGACAATTAACATGGATAGACAGTTAACTTTTTTTTTTTCTTTCACTCTTTATT 540
consensus_6168#1 ------------------------------------------------------------
consensus_6168#0 TCAGTTCAAGAACTTCAGGCACAGGGAAATAAACAAATGGCAGCAGGAGTATGTGTACAA 600
consensus_6168#1 -----------------------------------------------AGTATGTGTACAA 13
*************
consensus_6168#0 CAGTACATGCATTCAAGTGTACAGGCACAGCAGAAGGAAACTCTACAACATGTATAGATC 660
consensus_6168#1 CAGTACATGCATTCAAGTGTACAGGCACAGCAGAAGGAAACTCTACAACATGTATAGATC 73
************************************************************
consensus_6168#0 AGCTTGTATACCAACATAAACCATGTGGAGGCTTGTCAATGAGTAGGAGGCTTCCATCAT 720
consensus_6168#1 AGCTTGTATACCAACATAAACCATGTGGAGGCTTGTCAATGAGTAGGAGGCTTCCATCAT 133
************************************************************
consensus_6168#0 CACAATTTGATAATGCAGTTTGTATCTTCCTTTTGTAAATGCAGTTTGTAACTTCTTTTT 780
consensus_6168#1 CACAATTTGATAATGCAGTTTGTATCTTCCTTTTGTAAATGCAGTTTGTAACTTCTTTTT 193
************************************************************
consensus_6168#0 GAGACTGTAACATGTTGGGAGCAGAATTTGATAATGCAGTTTATAACATGTTGTAAATAC 840
consensus_6168#1 GAGACTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------------------- 232
********** * * * ** * ** *
consensus_6168#0 AGTTGTTGAACTATTGGGAGCAGAATGAATGAATGAATCGATCTGACAGTGTATAAATNC 900
consensus_6168#1 ------------------------------------------------------------
consensus_6168#0 GGCCAAAAAAAAAA 914
consensus_6168#1 --------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||