These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6171#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1964 fasta sequence [TAAATCCGAACGGCCTCTGCTTCTCGAAGCCCGGCCTGTAGCCTCGCCTCGCCTCCCTCCGCCGCCCCGGTTACGCAACCAAATACCGACGGCGCCGCCCGCCGACGAGCCTTCTCCCTTCGCGCCGCCCCCTCGCAGCATCCTCGTGCCCTCCTCCGGCATCTTCCTGCGCCGCGTTAGCATCGTCTGTCGGCGCCGTCGGAGGTTCTGCTCGGAGCTCGCTTCCGATGGACGGCGCGGCGACGGGCACGGAGCGCCTCTGCCCTCTAGGATGAGGGGCCGGAGACGTCGCCGGCGGAGGCTTGTGCAAGTCATCTATGCTAGCACACTTGATGACTGATGTCATGGAAGATAATTCTTCATGGACAGCTCTTTCTATTGATCACATTAGAATTTCTGCATTCAATTTCGGAATTGTCTCCGAGGATAACGATGAAGGCAAAGAATTTTTGCTTTCATTGGACACTGTTGTTCCTGATGATATCCTGGAGAGAATTTTCACGTTTTTACCTATAGTAAGCATGATAAGGTCAACAGCAGTTTGCAAAAGATGGCATGACATTATCTACTCAAGCAGGTTTCTTTGGACCCACATGTTGCCTCAGAGGCCATGGTACTTTATGTTCACTTCTAATGAAAGTGCTGCTGGGTATGCATATGACACGATTCTCCGCAAATGGTATGATTTAGAGCTTCCATGCATAGATAAGAGCAGTTGCTTTGTCTCTTCTTCTTGCGGATTAGTTTGTTTCATGGACAATGACAGCAGGAATGCCATTTCTGTATCTAATCCTATCACAAAAGATTGTAAGAGAATTTTGGAGCCCCCTGGTGCAAAGTTTCCAGACTACAGCACAATTGCCATAAAGGTAGATCGTTCCTCTCATAATTACACCATTACATTGGCAAAATGCAAGCAAGTTCCAGAGGATTACGTCCGATGGGATTTCTCTTTATACAAGTATGACTCACAGAGTAGTTCATGGGTGACTGCGGTTGAGGAGGTGTTCATTGGTTGGAGA-GGGGGTGATGACAGCGTGATATGTGATGGAGTATTGTACTGTTTAATTCACTCCACAGGCATTCTTGGTAATATTGAACCGCGTCATAGCATTATCATGTATGACCTTATTGCTGGGCCTTCTAAGGCGTCACTAATGCAATCGTCGATCCCAGCACCTTGCTCTCTCACCTGTGGACGTCTGCTTAACTTGAGGGAGAAGCTGGTTCTGGTTGGT-GGGATTGCAAAACAGAACAGACCTGACATCATCAAAGGAATTGGAATATGGGAACTTCACAAAAAACAATGGCAAGAGGTAGGTCGAATGCCTCATAAATTATTTCAAGGATTTGGTGAGTTTGATGATGTATTTGCTAGCAGTGGCACAGACGACCTTGTCTACATCCAAAGCTATGGTGCAACTGCTTTGCTTGCTTTCGATACGAAGCAGAAGCAGTGGAAGTGGTCCGCAAAATGCCCTGTGAGCAAAAGATTTCCTCTCCAGCTTTTCACTGGCTTTTGCTTTGAACCTCGGCTTGATATTACCACTTAATTGTAATGCCTTCCAATGGAATCAGGTTGGCAGTCCTGGTCTTTGTGAATATATGCATGCTTCATTAGATTGTTGCGTCACATGCAATGTGCTCTCCTTTGCTTATCATCCCACATTCGTCCTGATGGATGCAATTTCCTTTGCCTCTTTTCATTGGATTAATTAATCTTTAGAATGTTGATCTCTCTCTCTCTCTCTATAATAATGCCTGTTTACAAATGTACCTCTATTTTCTTTAAAAACAATGCATAGATCTATGCTATTTATCACATTTATCTGAATTCTCAAGTTCAGCCATGTACTGCCTCGACAAAACCTGCATACAATGTCTTTGCTTGATGCAGGCCTTAGAACCTGTCCATATAAACTGAATGAGCTATTGTCCTTACAGCATGTCTAGACAGATAAATT] [+] EMBL AK121359 [TAAATCCGAACGGCCTCTGCTTCTCGAAGCCCGGCCTGTAGCCTCGCCTCGCCTCCCTCCGCCGCCCCGGTTACGCAACCAAATACCGACGGCGCCGCCCGCCGACGAGCCTTCTCCCTTCGCGCCGCCCCCTCGCAGCATCCTCGTGCCCTCCTCCGGCATCTTCCTGCGCCGCGTTAGCATCGTCTGTCGGCGCCGTCGGAGGTTCTGCTCGGAGCTCGCTTCCGATGGACGGCGCGGCGACGGGCACGGAGCGCCTCTGCCCTCTAGGATGAGGGGCCGGAGACGTCGCCGGCGGAGGCTTGTGCAAGTCATCTATGCTAGCACACTTGATGACTGATGTCATGGAAGATAATTCTTCATGGACAGCTCTTTCTATTGATCACATTAGAATTTCTGCATTCAATTTCGGAATTGTCTCCGAGGATAACGATGAAGGCAAAGAATTTTTGCTTTCATTGGACACTGTTGTTCCTGATGATATCCTGGAGAGAATTTTCACGTTTTTACCTATAGTAAGCATGATAAGGTCAACAGCAGTTTGCAAAAGATGGCATGACATTATCTACTCAAGCAGGTTTCTTTGGACCCACATGTTGCCTCAGAGGCCATGGTACTTTATGTTCACTTCTAATGAAAGTGCTGCTGGGTATGCATATGACACGATTCTCCGCAAATGGTATGATTTAGAGCTTCCATGCATAGATAAGAGCAGTTGCTTTGTCTCTTCTTCTTGCGGATTAGTTTGTTTCATGGACAATGACAGCAGGAATGCCATTTCTGTATCTAATCCTATCACAAAAGATTGTAAGAGAATTTTGGAGCCCCCTGGTGCAAAGTTTCCAGACTACAGCACAATTGCCATAAAGGTAGATCGTTCCTCTCATAATTACACCATTACATTGGCAAAATGCAAGCAAGTTCCAGAGGATTACGTCCGATGGGATTTCTCTTTATACAAGTATGACTCACAGAGTAGTTCATGGGTGACTGCGGTTGAGGAGGTGTTCATTGGTTGGAGA GGGGGTGATGACAGCGTGATATGTGATGGAGTATTGTACTGTTTAATTCACTCCACAGGCATTCTTGGTAATATTGAACCGCGTCATAGCATTATCATGTATGACCTTATTGCTGGGCCTTCTAAGGCGTCACTAATGCAATCGTCGATCCCAGCACCTTGCTCTCTCACCTGTGGACGTCTGCTTAACTTGAGGGAGAAGCTGGTTCTGGTTGGT GGGATTGCAAAACAGAACAGACCTGACATCATCAAAGGAATTGGAATATGGGAACTTCACAAAAAACAATGGCAAGAGGTAGGTCGAATGCCTCATAAATTATTTCAAGGATTTGGTGAGTTTGATGATGTATTTGCTAGCAGTGGCACAGACGACCTTGTCTACATCCAAAGCTATGGTGCAACTGCTTTGCTTGCTTTCGATACGAAGCAGAAGCAGTGGAAGTGGTCCGCAAAATGCCCTGTGAGCAAAAGATTTCCTCTCCAGCTTTTCACTGGCTTTTGCTTTGAACCTCGGCTTGATATTACCACTTAATTGTAATGCCTTCCAATGGAATCAGGTTGGCAGTCCTGGTCTTTGTGAATATATGCATGCTTCATTAGATTGTTGCGTCACATGCAATGTGCTCTCCTTTGCTTATCATCCCACATTCGTCCTGATGGATGCAATTTCCTTTGCCTCTTTTCATTGGATTAATTAATCTTTAGAATGTTGATCTCTCTCTCTCTCTCTATAATAATGCCTGTTTACAAATGTACCTCTATTTTCTTTAAAAACAATGCATAGATCTATGCTATTTATCACATTTATCTGAATTCTCAAGTTCAGCCATGTACTGCCTCGACAAAACCTGCATACAATGTCTTTGCTTGATGCAGGCCTTAGAACCTGTCCATATAAACTGAATGAGCTATTGTCCTTACAGCATGTCTAGACAGATAAATT] [+] EMBL OS0122A [ GCATATGACCCGATTCTCCGCAAATGGTATGATTTAGAGCTTCCATGCATAGATAAGAGCAGTTGCTTTGTCTCTTCTTCTTGCGGATTAGTTTGTTTCATGGACAATGACAGCAGGAATGCCATTTCTGTATCTAATCCTATCACAAAAGATTGTAAGAGAATTTTGGAGCCCCCTGGTGCAAAGTTTCCAGACTACAGCACAATTGCCATAAAGGTAGATCGTTCCTCTCATAATTACACCATTACATTGGCAAAATGCAAGCAAGTTCCAGAGGATTACGT CGATGGGATTTCTCTTTATACAAGTATG GTCACAG ] [+] EMBL CF322558 [ CAAAGTTTCCAGACTACAGCACAATTGCCATAAAGGTAGATCGTTCCTCTCATAATTACACCATTACATTGGCAAAATGCAAGCAAGTTCCAGAGGATTACGTCCGATGGGATTTCTCTTTATACAAGTATGACTCACAGAGTAGTTCATGGGTGACTGCGGTTGAGGAGGTGTTCATTGGTTGGAGAGGGGGGTGATGACAGCGTGATATGTGATGGAGTATTGTACTGTTTAATTCACTCCACAGGCATTCTTGGTAATATTGAACCGCGTCATAGCATTATCATGTATGACCTTATTGCTGGGCCTTCTAAGGCGTCACTAATGCAATCGTCGATCCCAGCACCTTGCTCTCTCACCTGTGGACGTCTGCTTAACTTGAGGGAGAAGCTGGTTCTGGTTGGTGGGGATTGCAAAACAGAACAGACCTGACATCATCAAAGGAATTGGAATATGGGAACTTCACAAAAAACAATGGCAAGAGGTAGGTCGAATGCCTCATAAATTATTTCAAGGATTTGGTGAGTTTGATGATGTATTTGCTAGCAGTGGCACAGACGACCTTGTCTACATCCAAAGCTA ] consensusID : consensus_6171#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence [GNCCNNTCNCTAANTGCCAATCGTCCGANTCCCCTGCCNCCTTGCTCTCCTCACCTGTGGACTCCTGCTTAATTGAGGGAGAANCTGGTTCTGGTTNNTGGGATTNCAACNCGNAACAGACCCTGACATCATCAAAGGANATTGGAATCATGGGAACTTCACAAAAAACNNTGGCNAGAGGTAGGTCGAATGCCTCCATAAATTATTTCAAGGCATTTGGTGAGTTTGATGATGTATTTGCTAGCAGTGGCCACAGAACGACCTTGTCTACATCCAAAGCTATGGTNCAACTGCTTTGCTTGCTTTCGATACGAAGCAGAAGCAGTGGAAGTGGTCCGCAAAATGCCCTGTGAGCAAAAGATTTCCTCTCCAGCTTTTCACTGGCTTTTGCTTTGAACCTCGGCTTGATATTACCACTTAATTGTAATGCCTTCCAATGGAATCAGGTTGGCAGTCCTGGTCTTTGTGAATATATGCATGCTTCATTAGATTGTTGCGTCACATGCAATGTGCTCTCCTTTGCTTATCATCCCACATTCGTCNTNATGGATGCAAAAAAAAAAAAAAA] [+] EMBL C97919 [GNCCNNTCNCTAANTGCCAATCGTCCGANTCCCCTGCCNCCTTGCTCTCCTCACCTGTGGACTCCTGCTTAATTGAGGGAGAANCTGGTTCTGGTTNNTGGGATTNCAACNCGNAACAGACCCTGACATCATCAAAGGANATTGGAATCATGGGAACTTCACAAAAAACNNTGGCNAGAGGTAGGTCGAATGCCTCCATAAATTATTTCAAGGCATTTGGTGAGTTTGATGATGTATTTGCTAGCAGTGGCCACAGAACGACCTTGTCTACATCCAAAGCTATGGTNCAACTGCTTTGCTTGCTTTCGATACGAAGCAGAAGCAGTGGAAGTGGTCCGCAAAATGCCCTGTGAGCAAAAGATTTCCTCTCCAGCTTTTCACTGGCTTTTGCTTTGAACCTCGGCTTGATATTACCACTTAATTGTAATGCCTTCCAATGGAATCAGGTTGGCAGTCCTGGTCTTTGTGAATATATGCATGCTTCATTAGATTGTTGCGTCACATGCAATGTGCTCTCCTTTGCTTATCATCCCACATTCGTCNTNATGGATGCAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6171#0 TAAATCCGAACGGCCTCTGCTTCTCGAAGCCCGGCCTGTAGCCTCGCCTCGCCTCCCTCC 60 consensus_6171#1 ------------------------------------------------------------ consensus_6171#0 GCCGCCCCGGTTACGCAACCAAATACCGACGGCGCCGCCCGCCGACGAGCCTTCTCCCTT 120 consensus_6171#1 ------------------------------------------------------------ consensus_6171#0 CGCGCCGCCCCCTCGCAGCATCCTCGTGCCCTCCTCCGGCATCTTCCTGCGCCGCGTTAG 180 consensus_6171#1 ------------------------------------------------------------ consensus_6171#0 CATCGTCTGTCGGCGCCGTCGGAGGTTCTGCTCGGAGCTCGCTTCCGATGGACGGCGCGG 240 consensus_6171#1 ------------------------------------------------------------ consensus_6171#0 CGACGGGCACGGAGCGCCTCTGCCCTCTAGGATGAGGGGCCGGAGACGTCGCCGGCGGAG 300 consensus_6171#1 ------------------------------------------------------------ consensus_6171#0 GCTTGTGCAAGTCATCTATGCTAGCACACTTGATGACTGATGTCATGGAAGATAATTCTT 360 consensus_6171#1 ------------------------------------------------------------ consensus_6171#0 CATGGACAGCTCTTTCTATTGATCACATTAGAATTTCTGCATTCAATTTCGGAATTGTCT 420 consensus_6171#1 ------------------------------------------------------------ consensus_6171#0 CCGAGGATAACGATGAAGGCAAAGAATTTTTGCTTTCATTGGACACTGTTGTTCCTGATG 480 consensus_6171#1 ------------------------------------------------------------ consensus_6171#0 ATATCCTGGAGAGAATTTTCACGTTTTTACCTATAGTAAGCATGATAAGGTCAACAGCAG 540 consensus_6171#1 ------------------------------------------------------------ consensus_6171#0 TTTGCAAAAGATGGCATGACATTATCTACTCAAGCAGGTTTCTTTGGACCCACATGTTGC 600 consensus_6171#1 ------------------------------------------------------------ consensus_6171#0 CTCAGAGGCCATGGTACTTTATGTTCACTTCTAATGAAAGTGCTGCTGGGTATGCATATG 660 consensus_6171#1 ------------------------------------------------------------ consensus_6171#0 ACACGATTCTCCGCAAATGGTATGATTTAGAGCTTCCATGCATAGATAAGAGCAGTTGCT 720 consensus_6171#1 ------------------------------------------------------------ consensus_6171#0 TTGTCTCTTCTTCTTGCGGATTAGTTTGTTTCATGGACAATGACAGCAGGAATGCCATTT 780 consensus_6171#1 ------------------------------------------------------------ consensus_6171#0 CTGTATCTAATCCTATCACAAAAGATTGTAAGAGAATTTTGGAGCCCCCTGGTGCAAAGT 840 consensus_6171#1 ------------------------------------------------------------ consensus_6171#0 TTCCAGACTACAGCACAATTGCCATAAAGGTAGATCGTTCCTCTCATAATTACACCATTA 900 consensus_6171#1 ------------------------------------------------------------ consensus_6171#0 CATTGGCAAAATGCAAGCAAGTTCCAGAGGATTACGTCCGATGGGATTTCTCTTTATACA 960 consensus_6171#1 ------------------------------------------------------------ consensus_6171#0 AGTATGACTCACAGAGTAGTTCATGGGTGACTGCGGTTGAGGAGGTGTTCATTGGTTGGA 1020 consensus_6171#1 ------------------------------------------------------------ consensus_6171#0 GAGGGGGTGATGACAGCGTGATATGTGATGGAGTATTGTACTGTTTAATTCACTCCACAG 1080 consensus_6171#1 ------------------------------------------------------------ consensus_6171#0 GCATTCTTGGTAATATTGAACCGCGTCATAGCATTATCATGTATGACCTTATTGCTGGGC 1140 consensus_6171#1 ----------------------------------------------------------GN 2 * consensus_6171#0 CTTCTAAGGCGTCACTAATGCAATCGTCGATCCCAGCACCTTGCTCTC-TCACCTGTGGA 1199 consensus_6171#1 CCNNTCNCTAANTGCCAAT-CGTCCGANTCCCCTGCCNCCTTGCTCTCCTCACCTGTGGA 61 * * * *** * ** ** * ********** *********** consensus_6171#0 CGTCTGCTTAACTTGAGGGAGAAGCTGGTTCTGGTTGGTGGGATTGCAAAACAGAACAGA 1259 consensus_6171#1 CTCCTGCTTAA-TTGAGGGAGAANCTGGTTCTGGTTNNTGGGATTNCAACNCGNAACAGA 120 * ******** *********** ************ ******* *** * ****** consensus_6171#0 CC-TGACATCATCAAAGGAA-TTGGAAT-ATGGGAACTTCACAAAAAACAATGGCAAGAG 1316 consensus_6171#1 CCCTGACATCATCAAAGGANATTGGAATCATGGGAACTTCACAAAAAACNNTGGCNAGAG 180 ** **************** ******* ******************** **** **** consensus_6171#0 GTAGGTCGAATGCCTC-ATAAATTATTTCAAGG-ATTTGGTGAGTTTGATGATGTATTTG 1374 consensus_6171#1 GTAGGTCGAATGCCTCCATAAATTATTTCAAGGCATTTGGTGAGTTTGATGATGTATTTG 240 **************** **************** ************************** consensus_6171#0 CTAGCAGTGGC-ACAGA-CGACCTTGTCTACATCCAAAGCTATGGTGCAACTGCTTTGCT 1432 consensus_6171#1 CTAGCAGTGGCCACAGAACGACCTTGTCTACATCCAAAGCTATGGTNCAACTGCTTTGCT 300 *********** ***** **************************** ************* consensus_6171#0 TGCTTTCGATACGAAGCAGAAGCAGTGGAAGTGGTCCGCAAAATGCCCTGTGAGCAAAAG 1492 consensus_6171#1 TGCTTTCGATACGAAGCAGAAGCAGTGGAAGTGGTCCGCAAAATGCCCTGTGAGCAAAAG 360 ************************************************************ consensus_6171#0 ATTTCCTCTCCAGCTTTTCACTGGCTTTTGCTTTGAACCTCGGCTTGATATTACCACTTA 1552 consensus_6171#1 ATTTCCTCTCCAGCTTTTCACTGGCTTTTGCTTTGAACCTCGGCTTGATATTACCACTTA 420 ************************************************************ consensus_6171#0 ATTGTAATGCCTTCCAATGGAATCAGGTTGGCAGTCCTGGTCTTTGTGAATATATGCATG 1612 consensus_6171#1 ATTGTAATGCCTTCCAATGGAATCAGGTTGGCAGTCCTGGTCTTTGTGAATATATGCATG 480 ************************************************************ consensus_6171#0 CTTCATTAGATTGTTGCGTCACATGCAATGTGCTCTCCTTTGCTTATCATCCCACATTCG 1672 consensus_6171#1 CTTCATTAGATTGTTGCGTCACATGCAATGTGCTCTCCTTTGCTTATCATCCCACATTCG 540 ************************************************************ consensus_6171#0 TCCTGATGGATGCAATTTCCTTTGCCTCTTTTCATTGGATTAATTAATCTTTAGAATGTT 1732 consensus_6171#1 TCNTNATGGATGCAAAAAAAAAAAAAAA-------------------------------- 568 ** * ********** consensus_6171#0 GATCTCTCTCTCTCTCTCTATAATAATGCCTGTTTACAAATGTACCTCTATTTTCTTTAA 1792 consensus_6171#1 ------------------------------------------------------------ consensus_6171#0 AAACAATGCATAGATCTATGCTATTTATCACATTTATCTGAATTCTCAAGTTCAGCCATG 1852 consensus_6171#1 ------------------------------------------------------------ consensus_6171#0 TACTGCCTCGACAAAACCTGCATACAATGTCTTTGCTTGATGCAGGCCTTAGAACCTGTC 1912 consensus_6171#1 ------------------------------------------------------------ consensus_6171#0 CATATAAACTGAATGAGCTATTGTCCTTACAGCATGTCTAGACAGATAAATT 1964 consensus_6171#1 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||