cluster # 6177

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Oryza sativa
cluster # 6177 cluster # 6177 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6177#0 length = 606 sequences # 1

consensus_6177#1 length = 182 sequences # 3

consensusID : consensus_6177#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 606
fasta sequence

                              [TCTCAGCTAATTAATTAAGCTAACAGGCCAGCCAATCAGCCATGGCGGCCATGATGAACAACGAGAGATCAAGCAGCAACAAGCTGCAGGTTGACGCCGAGAACCCGGCGGCGGTGGGCGACGAGCTGGACCTGGCGGCGCGCGCCAACTGGCTGCGGGCGGCGGTGCTGGGCGCGAACGACGGGCTGGTGTCGACGGCGTCGCTGATGCTGGGGGTGGGCGCCGTGAAGGCGGAGGCGCGCGCCATGGTCATCTCCGGCTTCGCGGGCCTCCTGGCGGGCGCCTGCAGCATGGCCATCGGGGAGTTCGTGTCCGTGTGCTCGCAGCGCGATGTGGAGCTGGCGCAGCTGGAGCGCGATGGCAAGCGCGGCGGGGAGGAGGAGAAGGCCCTGCCGAGCCCCGCGCAGGCGGCGGCGGCGTCGGCCATGGCGTTCTCGGTGGGCGCCGTGGTGCCGCTGCTGGCGGCCGGGTTCATCGTCAACTACAGGCTGCGGATCGCGGTGGTGGTGGCGGTGGCGAGCGTGGCGCTGGCGGCGTTCGGGTGCGTGGGCGCGGTGCTGNGGCGGGCGGCGGTGGCGCGGTCGAGCGCGAGGGTGGTGCTCGGTG]

[+] EMBL CA755865             [TCTCAGCTAATTAATTAAGCTAACAGGCCAGCCAATCAGCCATGGCGGCCATGATGAACAACGAGAGATCAAGCAGCAACAAGCTGCAGGTTGACGCCGAGAACCCGGCGGCGGTGGGCGACGAGCTGGACCTGGCGGCGCGCGCCAACTGGCTGCGGGCGGCGGTGCTGGGCGCGAACGACGGGCTGGTGTCGACGGCGTCGCTGATGCTGGGGGTGGGCGCCGTGAAGGCGGAGGCGCGCGCCATGGTCATCTCCGGCTTCGCGGGCCTCCTGGCGGGCGCCTGCAGCATGGCCATCGGGGAGTTCGTGTCCGTGTGCTCGCAGCGCGATGTGGAGCTGGCGCAGCTGGAGCGCGATGGCAAGCGCGGCGGGGAGGAGGAGAAGGCCCTGCCGAGCCCCGCGCAGGCGGCGGCGGCGTCGGCCATGGCGTTCTCGGTGGGCGCCGTGGTGCCGCTGCTGGCGGCCGGGTTCATCGTCAACTACAGGCTGCGGATCGCGGTGGTGGTGGCGGTGGCGAGCGTGGCGCTGGCGGCGTTCGGGTGCGTGGGCGCGGTGCTGNGGCGGGCGGCGGTGGCGCGGTCGAGCGCGAGGGTGGTGCTCGGTG]




>consensus_6177#0
TCTCAGCTAATTAATTAAGCTAACAGGCCAGCCAATCAGCCATGGCGGCCATGATGAACA
ACGAGAGATCAAGCAGCAACAAGCTGCAGGTTGACGCCGAGAACCCGGCGGCGGTGGGCG
ACGAGCTGGACCTGGCGGCGCGCGCCAACTGGCTGCGGGCGGCGGTGCTGGGCGCGAACG
ACGGGCTGGTGTCGACGGCGTCGCTGATGCTGGGGGTGGGCGCCGTGAAGGCGGAGGCGC
GCGCCATGGTCATCTCCGGCTTCGCGGGCCTCCTGGCGGGCGCCTGCAGCATGGCCATCG
GGGAGTTCGTGTCCGTGTGCTCGCAGCGCGATGTGGAGCTGGCGCAGCTGGAGCGCGATG
GCAAGCGCGGCGGGGAGGAGGAGAAGGCCCTGCCGAGCCCCGCGCAGGCGGCGGCGGCGT
CGGCCATGGCGTTCTCGGTGGGCGCCGTGGTGCCGCTGCTGGCGGCCGGGTTCATCGTCA
ACTACAGGCTGCGGATCGCGGTGGTGGTGGCGGTGGCGAGCGTGGCGCTGGCGGCGTTCG
GGTGCGTGGGCGCGGTGCTGNGGCGGGCGGCGGTGGCGCGGTCGAGCGCGAGGGTGGTGC
TCGGTG

consensusID : consensus_6177#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 182
fasta sequence

                              [GTTTAGTTTAATTAATGCAGTAAGTTTTAAAAAAAATGAACTTAGTAGTAGAGCAGAGAGCTTAATTAACTAGCTAGTGATCGATCGATCATATGCCGCTGGCCTTGAAGAGCCTCATGAGGCCGAAGGTGATGCCCATGGCGGGCCACCCACCGAGCACCACCCTCGCGCTCGACCGCGCC]

[+] EMBL CB967341             [GTTTAGTTTAATTAATGCAGTAAGTTTTAAAAAAAATGAACTTAGTAGTAGAGCAGAGAGCTTAATTAACTAGCTAGTGATCGATCGATCATATGCCGCTGGCCTTGAAGAGCCTCATGAGGCCGAAGGTGATGCCCATGGCGGCCCACCCACCGAGCACCA CCTCGCGCTCGACCGGGCC]
[+] EMBL CB965066             [ TTTAGTTTAATTAATGCAGTAAGTTTTAAAAAAAATGAACTTAGTAGTAGAGCAGAGAGCTTAATTAACTAGCTAGTGATCGATCGATCATATGCCGCTGGCCTTGAAGAGCCTCATGAGGCCGAAGGTGATGCCCATGGCGGGCCACCCACCGAGCACCACCCTCGCGCTCGACCGCGCC]
[+] EMBL CB967338             [ TTTAGTTTAATTAATGCAGTAAGTTTTAAAAAAAATGAACTTAGTAGTAGAGC NAGAGCTTAATTAACTAGCTAGTGATCGATCGATCATATGCCGCTGGCCTTGAAGAGCCTCATGAGGCCGAAGGTGATGCCCATGGCGGNCCACCCACCGAGCACCACCCTCGCGCTCGACCGCGCC]




>consensus_6177#1
GTTTAGTTTAATTAATGCAGTAAGTTTTAAAAAAAATGAACTTAGTAGTAGAGCAGAGAG
CTTAATTAACTAGCTAGTGATCGATCGATCATATGCCGCTGGCCTTGAAGAGCCTCATGA
GGCCGAAGGTGATGCCCATGGCGGGCCACCCACCGAGCACCACCCTCGCGCTCGACCGCG
CC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6177#0      TCTCAGCTAATTAATTAAGCTAACAGGCCAGCCAATCAGCCATGGCGGCCATGATGAACA 60
consensus_6177#1      --------GTTTAGTTTAATTAATGCAGTAAGTT-TTAAAAAAAATGAACTTAGTAGTAG 51
                                *** ** *  ***      *     * *   *    *  * *  *     

consensus_6177#0      ACGAGAGATCAAGCAGCAACAAGCTGCAGGTTGACGCCGAGAACCCGGCGGCGGTGGGCG 120
consensus_6177#1      AGCAGAGAGCTTA-ATTAACTAGCTAGTGATCGA--TCGATCATATGCCGCTGGCCT-TG 107
                      *  ***** *    *  *** ****   * * **   ***  *   * **  **     *

consensus_6177#0      ACGAGCTGGACCTGGCGGCGCGCGCCAACTGGCTGCGGGCGGCGGTGCTGGGCGCGAACG 180
consensus_6177#1      AAGAGCCTCATGAGGCCGAAGGTGATGCCCA-TGGCGGGCCACC-CACCGAGCACCACCC 165
                      * ****   *   *** *   * *    *     ******  *    * * ** * * * 

consensus_6177#0      ACGGGCTGGTGTCGACGGCGTCGCTGATGCTGGGGGTGGGCGCCGTGAAGGCGGAGGCGC 240
consensus_6177#1      TCGCGCT-----CGACCGCGCC-------------------------------------- 182
                       ** ***     **** *** *                                      

consensus_6177#0      GCGCCATGGTCATCTCCGGCTTCGCGGGCCTCCTGGCGGGCGCCTGCAGCATGGCCATCG 300
consensus_6177#1      ------------------------------------------------------------
                                                                                  

consensus_6177#0      GGGAGTTCGTGTCCGTGTGCTCGCAGCGCGATGTGGAGCTGGCGCAGCTGGAGCGCGATG 360
consensus_6177#1      ------------------------------------------------------------
                                                                                  

consensus_6177#0      GCAAGCGCGGCGGGGAGGAGGAGAAGGCCCTGCCGAGCCCCGCGCAGGCGGCGGCGGCGT 420
consensus_6177#1      ------------------------------------------------------------
                                                                                  

consensus_6177#0      CGGCCATGGCGTTCTCGGTGGGCGCCGTGGTGCCGCTGCTGGCGGCCGGGTTCATCGTCA 480
consensus_6177#1      ------------------------------------------------------------
                                                                                  

consensus_6177#0      ACTACAGGCTGCGGATCGCGGTGGTGGTGGCGGTGGCGAGCGTGGCGCTGGCGGCGTTCG 540
consensus_6177#1      ------------------------------------------------------------
                                                                                  

consensus_6177#0      GGTGCGTGGGCGCGGTGCTGNGGCGGGCGGCGGTGGCGCGGTCGAGCGCGAGGGTGGTGC 600
consensus_6177#1      ------------------------------------------------------------
                                                                                  

consensus_6177#0      TCGGTG 606
consensus_6177#1      ------